View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0238_low_10 (Length: 448)
Name: NF0238_low_10
Description: NF0238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0238_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 30 - 440
Target Start/End: Complemental strand, 52677273 - 52676863
Alignment:
| Q |
30 |
gtattgtatatgaaataaaatgcatattccaaaattaataaccagacgagatgattaggcatatgaaaaattatacttaggagaatttacaagtttttcc |
129 |
Q |
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| T |
52677273 |
gtattgtatatgaaataaaatgcatattccaaaattaataaccagacgagatgattaggcatatgaaaaattatacttaggagaatttacaagtttttcc |
52677174 |
T |
|
| Q |
130 |
ctattatcgatgcaaacaatacctttcatgtatttgaactaaactctttgcatctctattgaattgatcatgatgatggtgaggaaggagaagatgaaga |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52677173 |
ctattatcgatgcaaacaatacctttcatgtatttgaactaaactctttgcatctctattgaattgatcatgatgatggtgaggaaggagaagatgaaga |
52677074 |
T |
|
| Q |
230 |
tggaaaaacatctttaacggcagaagcagcagatagataattaagcgtgtttttcaaagtttccttttccctcatcaatcttgcaccagtatcttccaat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52677073 |
tggaaaaacatctttaacggcagaagcagcagatagataattaagcgtatttttcaaagtttccttttccctcatcaatcttgcaccagtatcttccaat |
52676974 |
T |
|
| Q |
330 |
tccagcaaagcttgttgctctctaggtgcaccttcaaaagtgcttccaacnnnnnnnnnnnnnggcgttgggaataagttccttctcaaatcaccaactt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52676973 |
tccagcaaagcttgttgctctctaggtgcaccttcaaaagtgcttccaacaaaaaacgaaaaaggcgttgggaataagttccttctcaaatcaccaactt |
52676874 |
T |
|
| Q |
430 |
ctttctctgct |
440 |
Q |
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| T |
52676873 |
ctttctctgct |
52676863 |
T |
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