View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0238_low_16 (Length: 359)
Name: NF0238_low_16
Description: NF0238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0238_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 52 - 324
Target Start/End: Complemental strand, 41697333 - 41697074
Alignment:
| Q |
52 |
ttttgcttttctggtggttaccataatacatgtattgacttgtttgaatgacttggtcgttaaggatttgatgttattcagatagaatttagttgcataa |
151 |
Q |
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| T |
41697333 |
ttttgcttttcttgtggttaccataatacatgtattga-------------cttggttgttaaggatttgatgttattcggatagaatttagttgcataa |
41697247 |
T |
|
| Q |
152 |
cttttcaaaataaaggggtttaatcgga-nnnnnnnnnngcaaacacacctaacaaagtactctctggtgaagtaaataagatagtaacaataaaatcta |
250 |
Q |
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| T |
41697246 |
cttttcaaaataaaggggtttaatcggatttttttttttgcaaacacacctaacaaagtattctctggtgaagtaaataagatagtaacaatacaatcta |
41697147 |
T |
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| Q |
251 |
tttaagattttaatttaccattgtaattcttaattagacttaagttttatatgtttttgtttttgataggttca |
324 |
Q |
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| T |
41697146 |
tttaaga-tttaatttaccattgtaattcttaattagacttaagttttatatgtttttgtttttgataggttca |
41697074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 194 - 324
Target Start/End: Complemental strand, 41693365 - 41693235
Alignment:
| Q |
194 |
acacacctaacaaagtactctctggtgaagtaaataagatagtaacaataaaatctatttaagattttaatttaccattgtaattcttaattagacttaa |
293 |
Q |
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|||||||||||||||||||||||| || ||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| |||| |||||||| ||| | |
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| T |
41693365 |
acacacctaacaaagtactctctgatggagtaaataagagagtaataatacaatctatttaagattttcatttaccattgcaatttttaattaggcttta |
41693266 |
T |
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| Q |
294 |
gttttatatgtttttgtttttgataggttca |
324 |
Q |
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|||||||| |||||||||| || ||||||| |
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| T |
41693265 |
attttatatatttttgttttggacaggttca |
41693235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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