View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0238_low_18 (Length: 330)
Name: NF0238_low_18
Description: NF0238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0238_low_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 25 - 330
Target Start/End: Complemental strand, 25991815 - 25991510
Alignment:
| Q |
25 |
aacattctccaacattaggactaaggaaacaatcttcggaacagatattattacaatgttaatattacaactaaaatcagacataaatctcaaactcttc |
124 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
25991815 |
aacattctccaacattagggctaaggaaacaatcttcggaacagatattattacaatgttaatactacaactaaaatcagacataaatctcaaactcatc |
25991716 |
T |
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| Q |
125 |
atatattcaagtatttgagctgtgcaatttaatcacatcttaaaaactcgaagaatgggttgtggccgaatgttgaaatatgtagccggaaccaaataag |
224 |
Q |
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| T |
25991715 |
atatattcaagtatttgagctgtgcaatttaatcacatcttaaaaactcgaagaatgggttgtggccgaatgttgaaatatgtagccggaaccaaataag |
25991616 |
T |
|
| Q |
225 |
cgatgactacagacacataaagtttaaacaagacagaggaaaaagtgaagtacatgcataagctggtcaatataatcactgtcacacaatttaaaattcc |
324 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25991615 |
cgatgactacagacacataaagtttaaaccagacagaggaaaaagtgaagtacatgcataagccggtcaatataatcactgtcacacaatttaaaattcc |
25991516 |
T |
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| Q |
325 |
cttcat |
330 |
Q |
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|||||| |
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| T |
25991515 |
cttcat |
25991510 |
T |
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