View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0238_low_23 (Length: 315)
Name: NF0238_low_23
Description: NF0238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0238_low_23 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 34 - 315
Target Start/End: Complemental strand, 8140098 - 8139816
Alignment:
| Q |
34 |
caattacctgatattttcttttgtatactctgactgcagcagcatgagaaagtatcaagttatgagcaacagc-tagggctttgtacttgagtcaccagt |
132 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
8140098 |
caattacctgatattttctcttgtatactctgactgcagcagcatgagaaagtatcaagttatgagcaacaatgtagggctctgtacttgagtcaccagt |
8139999 |
T |
|
| Q |
133 |
agtgcaatttgctacatatttagaacatctaccaggtgcaaaggtaccaccattatatccattaatggtgtatgaataaggttcattaagtgtcacccaa |
232 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8139998 |
agtgcaatttgcaacatatttagaacatctaccaggtgcaaaagtaccaccattatatccattgatggtgtatgaataaggttcattaagtgtcacccaa |
8139899 |
T |
|
| Q |
233 |
tgcttaaccctatctccaaatgtcttgaagcaaaagtcagcatagactgcgaaatccttcctgttttatccattaaattaaga |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8139898 |
tgcttaaccctatctccaaatgtcttgaagcaaaagtcagcatagactgcgaaatccttcctgttttatccattaaattaaga |
8139816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 67 - 313
Target Start/End: Complemental strand, 8163964 - 8163717
Alignment:
| Q |
67 |
ctgcagcagcatgagaaagtatcaagttatgagcaacagc-tagggctttgtacttgagtcaccagtagtgcaatttgctacatatttagaacatctacc |
165 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| ||||| | |||| ||||||||||||||| ||||||| | ||||||||||| ||||| | |
|
|
| T |
8163964 |
ctgcagcagcatgagaaagtataaagtgatgagcaacaatgtagggttctgtagttgagtcaccagtagagcaatttccaacatatttagagcatcttgc |
8163865 |
T |
|
| Q |
166 |
aggtgcaaaggtaccaccattatatccattaatggtgtatgaataaggttcattaagtgtcacccaatgcttaaccctatctccaaatgtcttgaagcaa |
265 |
Q |
| |
|
||||| | | || || |||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8163864 |
aggtggagaagtgcctccatggtatccattaatggtgtaggaaacaggctcattaagtgtcacccaatgcttaaccctatctccaaatgtcttgaagcaa |
8163765 |
T |
|
| Q |
266 |
aagtcagcatagactgcgaaatccttcctgttttatccattaaattaa |
313 |
Q |
| |
|
|| ||||||||| || | ||||||||||| |||||| ||||||||||| |
|
|
| T |
8163764 |
aaatcagcataggcttcaaaatccttcctattttattcattaaattaa |
8163717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1643 times since January 2019
Visitors: 2392