View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0238_low_56 (Length: 212)
Name: NF0238_low_56
Description: NF0238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0238_low_56
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 44845289 - 44845451
Alignment:
Q
22
attctttctgtcttgcttatttcccttcaaagtttggtcaatcatcaactgactcaacccgaatccaaatgcggttgtgtctgtcgcgacaacagtacaa
121
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
44845289
attctttctgtcttgcttatttcccttcaaagtttggtcaatcatcaactgactcaacccgaatccaaatgcggttgtgtctgtcgcgacaacagtacaa
44845388
T
Q
122
catgtaacgattcagacaagttttgtggggttcagtattcggatcagactcaaatggcagcct
184
Q
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
T
44845389
catgtaacgattcagacaagctttgtggggttcagtattcggatcagactcaaatggcagcct
44845451
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 44858354 - 44858410
Alignment:
Q
118
acaacatgtaacgattcagacaagttttgtggggttcagtattcggatcagactcaa
174
Q
||||||||||||||||| || ||| |||||||||| |||||||| |||||| ||||
T
44858354
acaacatgtaacgattcggagaaggtttgtggggtccagtattctaatcagaatcaa
44858410
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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