View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0238_low_8 (Length: 496)
Name: NF0238_low_8
Description: NF0238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0238_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 20123489 - 20123126
Alignment:
| Q |
18 |
tgtggcaataagcattgacaacgaagacattgtaaaacgtcttgtagatgtaatagtaaagaagcataatgatcaaagtggttttgaaataaagactgaa |
117 |
Q |
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||||||| |||||| || ||||||||||| |||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
20123489 |
tgtggcagtaagcaatgccaacgaagacagtgtaaaacgtcttgtagatgcaatagtaaag---catgatgatcaaagtggttttgaaataaagactgaa |
20123393 |
T |
|
| Q |
118 |
agaggtgatactcctcttcaccttgcagcatatagaggattcacaagtaagtgtcaatgtatcattggaaaatatggtgaaaggaaggatttgattaaag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
20123392 |
agaggtgatactcctcttcaccttgcagcatatagaggattcaaaagtatgtgtcaatgtatcattggaaaatatggtgaaaggaagcatttgattcaag |
20123293 |
T |
|
| Q |
218 |
taaaaaatacaaagggagaaacaccactcttttctgctgtgcttgtacgcaatgaagagacctttatttacctacatcaatttttcaaatctgatatcaa |
317 |
Q |
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| T |
20123292 |
taaacaatgcaaagggagaaacaccacttttttgtgctgtgcttgcacgccataaaaagacctttctttacctacatcattttttcccatctgatatcac |
20123193 |
T |
|
| Q |
318 |
tattgctatcaataacaatggcgctaccatacttcaagttgccattcagagagaattgttcggttag |
384 |
Q |
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| T |
20123192 |
tattgctatcaataacgttggtgctaccattcttcacgttgccattcatagagaaatgttcggttag |
20123126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 36 - 372
Target Start/End: Original strand, 19896344 - 19896683
Alignment:
| Q |
36 |
caacgaagacattgtaaaacgtcttgtagatgtaatagtaaagaagcataatgatcaaagtggttttgaaataaagactgaaagaggtgatactcctctt |
135 |
Q |
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| T |
19896344 |
caacgaagacattgtaaaacgtcttgtagatgtaatagtaaagaagcataatgatcaaagtggtttggaaataaagactgaaaaaggtgatactcctctt |
19896443 |
T |
|
| Q |
136 |
caccttgcagcatatagaggattcacaagtaagtgtcaatgtatcattggaaaatatggtgaaaggaaggatttgattaaagtaaaaaatacaaagggag |
235 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||| ||||||||| || ||||| |||||||| |
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| T |
19896444 |
caccttgcagcatatagaggattcacaagtatgtgtgaatgtatcattggaaaaaatggtgaaaggaagcatttgattagagaccaaaatgaaaagggag |
19896543 |
T |
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| Q |
236 |
aaacaccactcttttctgctgtgcttgtacgc---aatgaagagacctttatttacctacatcaatttttcaaatctgatatcaatattgctatcaataa |
332 |
Q |
| |
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||||||||||||||| | ||||||||| | || ||| || |||||||| ||||||||||||| |||||| |||||||| || ||||||||||||||| |
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| T |
19896544 |
aaacaccactcttttgtactgtgcttgcaggcataaataaaaagacctttctttacctacatcattttttcccatctgataccagtattgctatcaataa |
19896643 |
T |
|
| Q |
333 |
caatggcgctaccatacttcaagttgccattcagagagaa |
372 |
Q |
| |
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| ||| |||||||| ||||| |||||||||| ||||||| |
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| T |
19896644 |
cgttggtgctaccattcttcacgttgccattcggagagaa |
19896683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 36 - 384
Target Start/End: Complemental strand, 20089615 - 20089270
Alignment:
| Q |
36 |
caacgaagacattgtaaaacgtcttgtagatgtaatagtaaagaagcataatgatcaaagtggttttgaaataaagactgaaagaggtgatactcctctt |
135 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20089615 |
caacgaagacattgtaaaacgtcttgtagatgcaatagtaaag---catgatgatcaaagtggttttgaaataaagactgaaagaggtgatactcctctt |
20089519 |
T |
|
| Q |
136 |
caccttgcagcatatagaggattcacaagtaagtgtcaatgtatcattggaaaatatggtgaaaggaaggatttgattaaagtaaaaaatacaaagggag |
235 |
Q |
| |
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|| |||||||||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||||||| |||||||| ||||||| ||| ||||||||| |
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| T |
20089518 |
catcttgcagcatatagaggattcaaaagtatgtgtgaatgtatcattggaaaaaatggtgaaaggaagcatttgattcaagtaaacaatgcaaagggag |
20089419 |
T |
|
| Q |
236 |
aaacaccactcttttctgctgtgcttgtacgcaatgaagagacctttatttacctacatcaatttttcaaatctgatatcaatattgctatcaataacaa |
335 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||| || || ||||||||||||| |||||||| ||||||| | |||| ||||||||||||||||||| | |
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| T |
20089418 |
aaacaccacttttttgtgctgtgcttgcacgccataaaaagacctttatttatctacatcagtttttcacaaatgatctcaatattgctatcaataaaga |
20089319 |
T |
|
| Q |
336 |
tggcgctaccatacttcaagttgccattcagagagaattgttcggttag |
384 |
Q |
| |
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| | | || ||| ||||| ||||| ||||| |||||| ||||||||||| |
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| T |
20089318 |
tcgtgataacatccttcacgttgcaattcatagagaaatgttcggttag |
20089270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 213
Target Start/End: Complemental strand, 20143548 - 20143444
Alignment:
| Q |
109 |
aagactgaaagaggtgatactcctcttcaccttgcagcatatagaggattcacaagtaagtgtcaatgtatcattggaaaatatggtgaaaggaaggatt |
208 |
Q |
| |
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|||| ||||| |||||| |||||| | ||||||||||||| |||||||||| | || ||| |||||||||| ||| ||| ||||||||| ||||||| |
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| T |
20143548 |
aagaatgaaaaaggtgacactcctttgcaccttgcagcatcaagaggattcaaagatatatgtgaatgtatcataggagaatgtggtgaaagaaaggatt |
20143449 |
T |
|
| Q |
209 |
tgatt |
213 |
Q |
| |
|
||||| |
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|
| T |
20143448 |
tgatt |
20143444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 213
Target Start/End: Original strand, 23269641 - 23269745
Alignment:
| Q |
109 |
aagactgaaagaggtgatactcctcttcaccttgcagcatatagaggattcacaagtaagtgtcaatgtatcattggaaaatatggtgaaaggaaggatt |
208 |
Q |
| |
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|||| ||||| |||||| |||||| | ||||||||||||| |||||||||| | || ||| |||||||||| ||| || ||||||||| ||||||| |
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| T |
23269641 |
aagaatgaaaaaggtgacactcctttgcaccttgcagcatcaagaggattcaaagatatatgtgaatgtatcataggagaaggtggtgaaagaaaggatt |
23269740 |
T |
|
| Q |
209 |
tgatt |
213 |
Q |
| |
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||||| |
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|
| T |
23269741 |
tgatt |
23269745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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