View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0239_low_2 (Length: 276)
Name: NF0239_low_2
Description: NF0239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0239_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 28 - 232
Target Start/End: Complemental strand, 38816119 - 38815915
Alignment:
| Q |
28 |
tcgactgatatgaacagaacagggatcagtatatgcattagagacgatgatggtgcgtttttgcttgccaaaactattacctttgaagtggttcactcag |
127 |
Q |
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| T |
38816119 |
tcgactgccatgaacggaacagggatcaatatatgcattagagacgatgatggtgtgtttgtgcttgccaaaactattacctttgaagtggttcactcaa |
38816020 |
T |
|
| Q |
128 |
ttcatgttggcgaggcattgggactgtaccatgctatggaatggctcagtgatatgcaactcaataatgttgattttgagacggattctaaaaccactca |
227 |
Q |
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| T |
38816019 |
ttcatgttggcgaggcgttgggactgtaccatgctatggaatggctcagtgatatgcaactcaataatgttgattttgagacggattctaaaaccactca |
38815920 |
T |
|
| Q |
228 |
tgatg |
232 |
Q |
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||||| |
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| T |
38815919 |
tgatg |
38815915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 31 - 232
Target Start/End: Original strand, 13574436 - 13574637
Alignment:
| Q |
31 |
actgatatgaacagaacagggatcagtatatgcattagagacgatgatggtgcgtttttgcttgccaaaactattacctttgaagtggttcactcagttc |
130 |
Q |
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|||| ||||||||||||| |||||||||||||| | ||||||||||| |||| ||| |||||||||||||||| || ||| || |||||||||||| |
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| T |
13574436 |
actgctatgaacagaacatggatcagtatatgcgtaagagacgatgacagtgcatttgtgcttgccaaaactatcacttttattgtaattcactcagttc |
13574535 |
T |
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| Q |
131 |
atgttggcgaggcattgggactgtaccatgctatggaatggctcagtgatatgcaactcaataatgttgattttgagacggattctaaaaccactcatga |
230 |
Q |
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| T |
13574536 |
atcttggcgaggcgttgggattgtactatgcaatggaatgtctcagtgatatgcaactcgataacgatgattttgagacggattctaaaaccacgcatga |
13574635 |
T |
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| Q |
231 |
tg |
232 |
Q |
| |
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|| |
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| T |
13574636 |
tg |
13574637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 19126707 - 19126817
Alignment:
| Q |
28 |
tcgactgatatgaacagaacagggatcagtatatgcattagagacgatgatggtgcgtttttgcttgccaaaactattacctttgaagtggttcactcag |
127 |
Q |
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||||||| ||||| |||||||||||| |||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
19126707 |
tcgactgtaatgaatagaacagggatctgtatatgcataagagacgatgatggcgcgtttgtgcttgtcaaaactattacctttgaagtggttcactcag |
19126806 |
T |
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| Q |
128 |
ttcatgttggc |
138 |
Q |
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||||||||||| |
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| T |
19126807 |
ttcatgttggc |
19126817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 31160684 - 31160849
Alignment:
| Q |
67 |
agagacgatgatggtgcgtttttgcttgccaaaactattacctttgaagtggttcactcagttcatgttggcgaggcattgggactgtaccatgctatgg |
166 |
Q |
| |
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||||| ||||| ||||| ||| |||| |||||||| || | |||||| || || || || ||||||||||| || || ||||| || ||||||||||||| |
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| T |
31160684 |
agagatgatgaaggtgcttttgtgctcgccaaaaccatcagctttgatgtagtgcattcggttcatgttggtgaagctttgggtctataccatgctatgg |
31160783 |
T |
|
| Q |
167 |
aatggctcagtgatatgcaactcaataatgttgattttgagacggattctaaaaccactcatgatg |
232 |
Q |
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| T |
31160784 |
aatggttaagtgatatgctattcgataatgttgacttcgaaacagattctaagaccactcacgatg |
31160849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 11604412 - 11604346
Alignment:
| Q |
154 |
taccatgctatggaatggctcagtgatatgcaactcaataatgttgattttgagacggattctaaaa |
220 |
Q |
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||||||||| |||||||||| |||||||||||| || | ||||| |||||| |||||||||||||| |
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| T |
11604412 |
taccatgctttggaatggctaagtgatatgcaattcgacaatgtagatttttcgacggattctaaaa |
11604346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 5068239 - 5068319
Alignment:
| Q |
152 |
tgtaccatgctatggaatggctcagtgatatgcaactcaataatgttgattttgagacggattctaaaaccactcatgatg |
232 |
Q |
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||||||||||| |||||||| | || |||||||| || |||||||||| |||| | |||||||||||| |||||||||| |
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| T |
5068239 |
tgtaccatgctttggaatggttaagcaatatgcaattcgataatgttgactttgcaatggattctaaaactactcatgatg |
5068319 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 41655616 - 41655559
Alignment:
| Q |
175 |
agtgatatgcaactcaataatgttgattttgagacggattctaaaaccactcatgatg |
232 |
Q |
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||||| |||||||| ||||||| || ||||||||||| ||||||||||| ||||||| |
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| T |
41655616 |
agtgacatgcaacttgataatgtcgactttgagacggactctaaaaccacccatgatg |
41655559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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