View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0239_low_5 (Length: 205)
Name: NF0239_low_5
Description: NF0239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0239_low_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 35610515 - 35610396
Alignment:
| Q |
86 |
cacagaaggcaaatctgagttttagagaatccatactgctaatccaacagatccgagcccaaatatagcaactgatgaccctggctctacacctgctgtt |
185 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35610515 |
cacagaaggcaaatctgagttttagagagcccatactgctaatccaacagatcctagcccaaatatagcaactgatgaccctggctctacacctgctgtt |
35610416 |
T |
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| Q |
186 |
ctccaagcagcccctacccc |
205 |
Q |
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||||||||||| |||||||| |
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| T |
35610415 |
ctccaagcagcacctacccc |
35610396 |
T |
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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 35614965 - 35614879
Alignment:
| Q |
119 |
tactgctaatccaacagatccgagcccaaatatagcaactgatgaccctggctctacacctgctgttctccaagcagcccctacccc |
205 |
Q |
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|||||||||||||| |||||| || ||||| ||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
35614965 |
tactgctaatccaatagatcctagtccaaaaatagctactgtagaccctggctccacacctgctgttctccaagcagcacctacccc |
35614879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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