View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0243-INSERTION-1 (Length: 290)

Name: NF0243-INSERTION-1
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0243-INSERTION-1
NF0243-INSERTION-1
[»] chr5 (18 HSPs)
chr5 (8-290)||(3299487-3299769)
chr5 (8-290)||(3392380-3392662)
chr5 (160-290)||(1849919-1850049)
chr5 (160-290)||(1163690-1163817)
chr5 (157-290)||(39879768-39879898)
chr5 (157-290)||(40418237-40418367)
chr5 (8-138)||(40418404-40418531)
chr5 (157-290)||(38987659-38987789)
chr5 (157-290)||(39726372-39726502)
chr5 (8-125)||(1163559-1163676)
chr5 (8-125)||(1850063-1850180)
chr5 (8-138)||(39879941-39880068)
chr5 (13-138)||(38987826-38987948)
chr5 (13-138)||(39726545-39726667)
chr5 (157-290)||(39168800-39168930)
chr5 (157-290)||(39399813-39399943)
chr5 (10-137)||(39168974-39169101)
chr5 (22-64)||(39400042-39400084)
[»] chr4 (4 HSPs)
chr4 (8-138)||(25912125-25912252)
chr4 (157-290)||(25912292-25912422)
chr4 (163-229)||(44444772-44444838)
chr4 (15-75)||(44444614-44444674)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 3299769 - 3299487
Alignment:
Q  8 ttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3299769 ttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaa 3299670  T
Q  108 tcttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaag 207  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299669 ttttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaag 3299570  T
Q  208 atgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacgatatt 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299569 atgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacgatatt 3299487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 3392662 - 3392380
Alignment:
Q  8 ttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3392662 ttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaa 3392563  T
Q  108 tcttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaag 207  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392562 ttttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaag 3392463  T
Q  208 atgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacgatatt 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392462 atgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacgatatt 3392380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 160 - 290
Target Start/End: Complemental strand, 1850049 - 1849919
Alignment:
Q  160 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 259  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1850049 caggtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcaca 1849950  T
Q  260 cgagcaaccatggcatcagctaaacgatatt 290  Q
    |||||||| ||||||| ||||||||||||||    
T  1849949 cgagcaactatggcattagctaaacgatatt 1849919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 160 - 290
Target Start/End: Original strand, 1163690 - 1163817
Alignment:
Q  160 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  1163690 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 1163786  T
Q  260 cgagcaaccatggcatcagctaaacgatatt 290  Q
    |||||||| ||||||| ||||||||||||||    
T  1163787 cgagcaactatggcattagctaaacgatatt 1163817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 157 - 290
Target Start/End: Complemental strand, 39879898 - 39879768
Alignment:
Q  157 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  39879898 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 39879802  T
Q  257 acacgagcaaccatggcatcagctaaacgatatt 290  Q
    |||||||||||||  |||||||||||||||||||    
T  39879801 acacgagcaaccacagcatcagctaaacgatatt 39879768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 157 - 290
Target Start/End: Complemental strand, 40418367 - 40418237
Alignment:
Q  157 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||||||||||||    
T  40418367 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc 40418271  T
Q  257 acacgagcaaccatggcatcagctaaacgatatt 290  Q
    |||||||||||||  ||||||||||||| |||||    
T  40418270 acacgagcaaccacagcatcagctaaacaatatt 40418237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 40418531 - 40418404
Alignment:
Q  8 ttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaa 107  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||   ||||| |||||||||||    
T  40418531 ttagtgtcttgttgtagatcattgaagaagagttgataatcagattcccacttatcatgaagagcaacaactctaccatt---ctcttcggcataactaa 40418435  T
Q  108 tcttggtgatcaaaatggcagcaggaaggtt 138  Q
    |||||||||||||||||||||||||||||||    
T  40418434 tcttggtgatcaaaatggcagcaggaaggtt 40418404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 157 - 290
Target Start/End: Complemental strand, 38987789 - 38987659
Alignment:
Q  157 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 256  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  38987789 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 38987693  T
Q  257 acacgagcaaccatggcatcagctaaacgatatt 290  Q
    |||||||||||||  |||||||||||||||||||    
T  38987692 acacgagcaaccacagcatcagctaaacgatatt 38987659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 157 - 290
Target Start/End: Complemental strand, 39726502 - 39726372
Alignment:
Q  157 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 256  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  39726502 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 39726406  T
Q  257 acacgagcaaccatggcatcagctaaacgatatt 290  Q
    |||||||||||||  |||||||||||||||||||    
T  39726405 acacgagcaaccacagcatcagctaaacgatatt 39726372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 1163559 - 1163676
Alignment:
Q  8 ttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaa 107  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||  ||| ||||||    
T  1163559 ttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaa 1163658  T
Q  108 tcttggtgatcaaaatgg 125  Q
    ||||||| ||||||||||    
T  1163659 tcttggtaatcaaaatgg 1163676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 1850180 - 1850063
Alignment:
Q  8 ttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaa 107  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||  ||| ||||||    
T  1850180 ttagggtcttgttgtaaatcttttaagaagagttgataatcagattcccacttatcctgaacaggaataactctaccattctcctctttagcaaaactaa 1850081  T
Q  108 tcttggtgatcaaaatgg 125  Q
    ||||||| ||||||||||    
T  1850080 tcttggtaatcaaaatgg 1850063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 39880068 - 39879941
Alignment:
Q  8 ttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaa 107  Q
    ||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||   | ||| |||||||||||    
T  39880068 ttagtgttttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccatt---cacttcggcataactaa 39879972  T
Q  108 tcttggtgatcaaaatggcagcaggaaggtt 138  Q
    ||||| |||||||||||||||||||||||||    
T  39879971 tcttgctgatcaaaatggcagcaggaaggtt 39879941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 38987948 - 38987826
Alignment:
Q  13 gtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttg 112  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||   | ||| ||||||||||||||||    
T  38987948 gtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccatt---cacttcggcataactaatcttg 38987852  T
Q  113 gtgatcaaaatggcagcaggaaggtt 138  Q
     |||||||||||||||||||||||||    
T  38987851 ctgatcaaaatggcagcaggaaggtt 38987826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 39726667 - 39726545
Alignment:
Q  13 gtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttg 112  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||   | ||| ||||||||||||||||    
T  39726667 gtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccatt---cacttcggcataactaatcttg 39726571  T
Q  113 gtgatcaaaatggcagcaggaaggtt 138  Q
     |||||||||||||||||||||||||    
T  39726570 ctgatcaaaatggcagcaggaaggtt 39726545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 157 - 290
Target Start/End: Complemental strand, 39168930 - 39168800
Alignment:
Q  157 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 256  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||||||||||||||||||   | ||||||||||| ||||| |    
T  39168930 agacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc 39168834  T
Q  257 acacgagcaaccatggcatcagctaaacgatatt 290  Q
    ||||||||||||| |||||||||||| |||||||    
T  39168833 acacgagcaaccacggcatcagctaaccgatatt 39168800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 157 - 290
Target Start/End: Complemental strand, 39399943 - 39399813
Alignment:
Q  157 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 256  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||| |||||||||||||||||   | ||||||||||| || || |    
T  39399943 agacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaaaattttcc 39399847  T
Q  257 acacgagcaaccatggcatcagctaaacgatatt 290  Q
    ||||||||||||| ||||||||||||||| ||||    
T  39399846 acacgagcaaccacggcatcagctaaacggtatt 39399813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 39169101 - 39168974
Alignment:
Q  10 agtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaac---tctaccattctcctcttgggcataacta 106  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||||||   ||||||||| || || |   ||||||||    
T  39169101 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttaccctcaacaacaacaacaattctaccattttcttcat---cataacta 39169005  T
Q  107 atcttggtgatcaaaatggcagcaggaaggt 137  Q
     ||||||| |||||||| |||||||||||||    
T  39169004 ctcttggtaatcaaaattgcagcaggaaggt 39168974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 39400084 - 39400042
Alignment:
Q  22 tagatcttttaagaagagttgataatcagattcccacttatcc 64  Q
    |||||||| ||||||||||||||||||||||| ||||||||||    
T  39400084 tagatcttctaagaagagttgataatcagattgccacttatcc 39400042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 25912125 - 25912252
Alignment:
Q  8 ttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaa 107  Q
    |||| |||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||| |||||||||||    
T  25912125 ttagggtcttgctgtagataatttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccatt---ctcttcggcataactaa 25912221  T
Q  108 tcttggtgatcaaaatggcagcaggaaggtt 138  Q
    ||||||||||||||||||||||| |||||||    
T  25912222 tcttggtgatcaaaatggcagcatgaaggtt 25912252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 157 - 290
Target Start/End: Original strand, 25912292 - 25912422
Alignment:
Q  157 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 256  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||   | |||||||||||||||||||    
T  25912292 agacaggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc 25912388  T
Q  257 acacgagcaaccatggcatcagctaaacgatatt 290  Q
    |||||||||||||   ||||||||||||||||||    
T  25912389 acacgagcaaccacatcatcagctaaacgatatt 25912422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 44444772 - 44444838
Alignment:
Q  163 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 229  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44444772 gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 44444838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 44444614 - 44444674
Alignment:
Q  15 cttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaac 75  Q
    |||||| ||||| ||||||||| |||| ||||||||||||| | |||||||||||| ||||    
T  44444614 cttgttttagatattttaagaaaagtttataatcagattccaatttatcctgaacaacaac 44444674  T

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