View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0243-INSERTION-10 (Length: 774)

Name: NF0243-INSERTION-10
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0243-INSERTION-10
NF0243-INSERTION-10
[»] chr4 (39 HSPs)
chr4 (422-774)||(9718896-9719251)
chr4 (7-185)||(9719487-9719664)
chr4 (249-368)||(9719304-9719423)
chr4 (554-751)||(36774809-36775006)
chr4 (511-699)||(4909878-4910066)
chr4 (532-670)||(43887577-43887714)
chr4 (583-696)||(2774731-2774845)
chr4 (510-751)||(21410187-21410429)
chr4 (554-676)||(22438371-22438493)
chr4 (516-752)||(33383866-33384103)
chr4 (621-704)||(51026220-51026303)
chr4 (512-681)||(24076708-24076877)
chr4 (624-752)||(955960-956089)
chr4 (620-702)||(44558814-44558896)
chr4 (620-702)||(51426704-51426786)
chr4 (623-702)||(28083816-28083895)
chr4 (620-702)||(34151779-34151862)
chr4 (624-691)||(49422259-49422326)
chr4 (619-702)||(49572727-49572810)
chr4 (620-702)||(37868094-37868176)
chr4 (624-702)||(56140516-56140594)
chr4 (624-701)||(21015908-21015985)
chr4 (624-702)||(34528334-34528412)
chr4 (620-691)||(6281023-6281094)
chr4 (624-690)||(37959568-37959634)
chr4 (624-702)||(39590393-39590471)
chr4 (512-691)||(4783703-4783879)
chr4 (532-704)||(8866830-8867001)
chr4 (514-702)||(1044372-1044559)
chr4 (630-701)||(41793539-41793610)
chr4 (514-702)||(9491110-9491299)
chr4 (624-701)||(40352505-40352582)
chr4 (630-701)||(55799356-55799427)
chr4 (513-650)||(47312928-47313065)
chr4 (735-774)||(49816053-49816092)
chr4 (516-572)||(39590523-39590580)
chr4 (630-674)||(6176052-6176096)
chr4 (630-674)||(49096172-49096216)
chr4 (534-572)||(56140646-56140684)
[»] scaffold0859 (1 HSPs)
scaffold0859 (530-752)||(1941-2165)
[»] chr1 (47 HSPs)
chr1 (553-704)||(23344229-23344380)
chr1 (512-704)||(33285747-33285940)
chr1 (553-696)||(38043549-38043692)
chr1 (554-696)||(39855589-39855732)
chr1 (553-704)||(14440859-14441009)
chr1 (553-704)||(40531797-40531948)
chr1 (510-656)||(12789763-12789910)
chr1 (534-702)||(14172167-14172335)
chr1 (624-704)||(49260097-49260177)
chr1 (620-702)||(41803859-41803941)
chr1 (620-702)||(49398296-49398378)
chr1 (534-691)||(51271427-51271584)
chr1 (622-702)||(18974956-18975036)
chr1 (620-691)||(49925022-49925093)
chr1 (620-702)||(26633693-26633775)
chr1 (624-702)||(44336419-44336497)
chr1 (583-704)||(15355171-15355281)
chr1 (620-702)||(29760669-29760751)
chr1 (620-702)||(42570288-42570370)
chr1 (625-691)||(46141937-46142003)
chr1 (546-691)||(13148890-13149029)
chr1 (624-701)||(13634035-13634112)
chr1 (624-701)||(19162061-19162138)
chr1 (540-704)||(19260970-19261135)
chr1 (620-688)||(44598745-44598813)
chr1 (624-702)||(6437365-6437443)
chr1 (624-702)||(36911521-36911599)
chr1 (619-703)||(14771288-14771372)
chr1 (624-704)||(17373810-17373890)
chr1 (621-704)||(13285170-13285253)
chr1 (620-702)||(49428987-49429069)
chr1 (624-689)||(27485203-27485267)
chr1 (512-572)||(24362346-24362407)
chr1 (657-702)||(24362488-24362533)
chr1 (629-702)||(35524903-35524976)
chr1 (514-572)||(26497842-26497900)
chr1 (654-691)||(29437560-29437597)
chr1 (534-572)||(27485113-27485151)
chr1 (713-774)||(35186637-35186698)
chr1 (713-774)||(35585431-35585492)
chr1 (516-572)||(16530613-16530669)
chr1 (512-572)||(49398425-49398485)
chr1 (532-575)||(39063288-39063331)
chr1 (644-703)||(39063400-39063459)
chr1 (624-702)||(48228141-48228215)
chr1 (626-699)||(13974553-13974627)
chr1 (534-572)||(44336329-44336367)
[»] chr3 (54 HSPs)
chr3 (553-704)||(51017007-51017158)
chr3 (532-704)||(42321806-42321977)
chr3 (511-757)||(18441892-18442139)
chr3 (511-757)||(19486966-19487213)
chr3 (512-757)||(20374279-20374515)
chr3 (553-704)||(34470406-34470563)
chr3 (554-696)||(44929194-44929336)
chr3 (582-704)||(10051731-10051853)
chr3 (583-704)||(49275110-49275231)
chr3 (554-696)||(11377345-11377487)
chr3 (583-696)||(51011700-51011813)
chr3 (597-751)||(27096130-27096285)
chr3 (516-704)||(8397628-8397814)
chr3 (621-704)||(50457665-50457748)
chr3 (512-704)||(50340902-50341092)
chr3 (620-691)||(55267581-55267652)
chr3 (620-702)||(2267221-2267303)
chr3 (620-702)||(52567924-52568006)
chr3 (620-691)||(36136435-36136506)
chr3 (620-691)||(50998491-50998562)
chr3 (620-691)||(55205433-55205504)
chr3 (624-702)||(45098974-45099052)
chr3 (625-702)||(2430103-2430180)
chr3 (624-691)||(44490515-44490582)
chr3 (620-702)||(34691791-34691873)
chr3 (624-702)||(43571509-43571587)
chr3 (624-702)||(46345096-46345174)
chr3 (620-702)||(49217256-49217338)
chr3 (534-702)||(13894306-13894474)
chr3 (620-691)||(24700887-24700958)
chr3 (624-702)||(41579559-41579638)
chr3 (620-691)||(41805511-41805582)
chr3 (624-702)||(43478654-43478733)
chr3 (620-702)||(4002879-4002960)
chr3 (620-701)||(2645621-2645702)
chr3 (630-691)||(3493760-3493821)
chr3 (630-691)||(3497454-3497515)
chr3 (622-691)||(7247707-7247776)
chr3 (624-702)||(34645730-34645807)
chr3 (620-702)||(51694044-51694126)
chr3 (620-688)||(16484294-16484363)
chr3 (620-691)||(44223186-44223257)
chr3 (512-569)||(34645619-34645676)
chr3 (516-572)||(2432899-2432955)
chr3 (534-681)||(19440336-19440483)
chr3 (630-674)||(2950541-2950585)
chr3 (553-681)||(7988273-7988400)
chr3 (630-674)||(34051167-34051211)
chr3 (535-575)||(46345017-46345057)
chr3 (630-674)||(46406445-46406489)
chr3 (630-674)||(49138789-49138833)
chr3 (735-774)||(14633102-14633141)
chr3 (534-572)||(43478785-43478823)
chr3 (745-774)||(27188735-27188764)
[»] chr7 (36 HSPs)
chr7 (555-704)||(20876415-20876564)
chr7 (514-704)||(4231080-4231270)
chr7 (553-696)||(22292568-22292711)
chr7 (553-677)||(43349738-43349862)
chr7 (554-696)||(17184901-17185043)
chr7 (620-702)||(28112948-28113030)
chr7 (620-702)||(36392291-36392373)
chr7 (624-704)||(1641045-1641125)
chr7 (624-704)||(42736692-42736772)
chr7 (620-691)||(10524168-10524239)
chr7 (512-702)||(46860568-46860748)
chr7 (620-702)||(15309801-15309883)
chr7 (620-702)||(45257856-45257938)
chr7 (624-702)||(48272281-48272359)
chr7 (620-699)||(28977723-28977802)
chr7 (620-702)||(17840716-17840798)
chr7 (620-702)||(33603366-33603448)
chr7 (624-702)||(48314832-48314910)
chr7 (625-702)||(48194457-48194534)
chr7 (624-702)||(21185794-21185872)
chr7 (513-686)||(34142500-34142674)
chr7 (624-702)||(40590375-40590453)
chr7 (629-702)||(41623710-41623783)
chr7 (630-701)||(20566160-20566231)
chr7 (634-701)||(42503996-42504063)
chr7 (624-691)||(42684044-42684111)
chr7 (624-684)||(15070524-15070584)
chr7 (624-702)||(45361793-45361871)
chr7 (629-691)||(46597059-46597120)
chr7 (644-704)||(3379573-3379633)
chr7 (634-699)||(10225693-10225758)
chr7 (630-674)||(9365854-9365898)
chr7 (512-572)||(10225799-10225859)
chr7 (512-572)||(28112840-28112900)
chr7 (514-588)||(15309915-15309989)
chr7 (534-572)||(45361703-45361741)
[»] chr5 (34 HSPs)
chr5 (510-704)||(36348684-36348879)
chr5 (554-751)||(41088233-41088430)
chr5 (583-751)||(6791850-6792018)
chr5 (554-704)||(1696448-1696598)
chr5 (554-696)||(7483857-7483999)
chr5 (603-751)||(40937099-40937247)
chr5 (516-700)||(25499715-25499899)
chr5 (624-752)||(18309833-18309961)
chr5 (620-702)||(541089-541171)
chr5 (619-704)||(23190666-23190751)
chr5 (624-702)||(5965-6043)
chr5 (619-701)||(11028831-11028913)
chr5 (622-699)||(20199988-20200065)
chr5 (624-704)||(1973082-1973162)
chr5 (624-701)||(38855538-38855615)
chr5 (620-690)||(8539381-8539451)
chr5 (620-702)||(34682422-34682504)
chr5 (624-701)||(8574890-8574967)
chr5 (625-702)||(11348327-11348404)
chr5 (630-702)||(41201903-41201975)
chr5 (630-701)||(19035413-19035484)
chr5 (624-699)||(41798988-41799064)
chr5 (624-691)||(3602996-3603062)
chr5 (624-680)||(27660109-27660165)
chr5 (515-704)||(7401693-7401881)
chr5 (647-704)||(13129928-13129985)
chr5 (624-701)||(30710987-30711064)
chr5 (641-696)||(4722512-4722568)
chr5 (460-528)||(16462324-16462394)
chr5 (655-702)||(35566908-35566955)
chr5 (534-572)||(541006-541044)
chr5 (451-489)||(16461909-16461947)
chr5 (514-572)||(18310003-18310061)
chr5 (656-689)||(35926559-35926592)
[»] chr2 (29 HSPs)
chr2 (532-704)||(37311041-37311212)
chr2 (553-704)||(23719444-23719595)
chr2 (553-704)||(24107116-24107267)
chr2 (583-704)||(17537283-17537404)
chr2 (553-696)||(5422052-5422195)
chr2 (624-703)||(34520135-34520214)
chr2 (620-702)||(35493167-35493249)
chr2 (624-704)||(10358966-10359046)
chr2 (620-691)||(40675902-40675973)
chr2 (620-702)||(3943016-3943098)
chr2 (620-702)||(23786291-23786373)
chr2 (624-702)||(29090746-29090824)
chr2 (624-702)||(43493110-43493188)
chr2 (624-688)||(14181673-14181737)
chr2 (624-702)||(23409330-23409406)
chr2 (624-702)||(2917842-2917920)
chr2 (619-701)||(39798607-39798689)
chr2 (620-699)||(16583422-16583502)
chr2 (514-702)||(19470017-19470204)
chr2 (620-691)||(41497638-41497709)
chr2 (624-701)||(22003228-22003305)
chr2 (630-701)||(3936038-3936109)
chr2 (512-691)||(8268586-8268765)
chr2 (630-701)||(17426192-17426263)
chr2 (624-702)||(34639139-34639217)
chr2 (624-701)||(28476894-28476971)
chr2 (516-572)||(40675799-40675855)
chr2 (630-674)||(43984155-43984199)
chr2 (534-572)||(16583550-16583588)
[»] chr8 (23 HSPs)
chr8 (554-696)||(26488298-26488440)
chr8 (595-696)||(26488180-26488281)
chr8 (624-751)||(19241147-19241274)
chr8 (624-751)||(19314331-19314458)
chr8 (624-704)||(38032380-38032460)
chr8 (624-702)||(38872767-38872845)
chr8 (624-702)||(18438793-18438872)
chr8 (624-702)||(22550690-22550768)
chr8 (540-699)||(41276714-41276873)
chr8 (620-691)||(41855529-41855600)
chr8 (620-702)||(26455501-26455583)
chr8 (624-702)||(41016583-41016661)
chr8 (624-701)||(45066188-45066265)
chr8 (619-674)||(31170580-31170635)
chr8 (620-691)||(40703997-40704067)
chr8 (620-702)||(28168428-28168510)
chr8 (624-689)||(44052064-44052129)
chr8 (630-701)||(483991-484062)
chr8 (620-691)||(42605071-42605142)
chr8 (624-701)||(15031053-15031129)
chr8 (630-704)||(14120400-14120473)
chr8 (714-757)||(14120338-14120382)
chr8 (595-657)||(14120539-14120601)
[»] chr6 (28 HSPs)
chr6 (554-696)||(12398516-12398658)
chr6 (625-752)||(32026132-32026260)
chr6 (620-691)||(35019742-35019813)
chr6 (607-688)||(30763469-30763550)
chr6 (620-702)||(13404458-13404540)
chr6 (510-681)||(17126819-17126991)
chr6 (624-702)||(13616410-13616488)
chr6 (620-699)||(29076152-29076231)
chr6 (620-699)||(29109685-29109764)
chr6 (620-699)||(29111125-29111204)
chr6 (619-702)||(32691349-32691432)
chr6 (624-702)||(29083338-29083416)
chr6 (630-701)||(27641545-27641616)
chr6 (624-699)||(29068094-29068169)
chr6 (624-702)||(14124544-14124622)
chr6 (624-701)||(34801673-34801751)
chr6 (636-704)||(20240874-20240942)
chr6 (636-704)||(22134858-22134926)
chr6 (636-704)||(22142211-22142279)
chr6 (630-674)||(6206914-6206958)
chr6 (630-674)||(11693881-11693925)
chr6 (516-572)||(29076279-29076335)
chr6 (516-572)||(29109812-29109868)
chr6 (516-572)||(29111252-29111308)
chr6 (512-572)||(33201987-33202047)
chr6 (534-589)||(13616320-13616375)
chr6 (512-572)||(5972057-5972118)
chr6 (593-670)||(33201910-33201987)
[»] scaffold0192 (1 HSPs)
scaffold0192 (624-702)||(16561-16639)
[»] scaffold0176 (2 HSPs)
scaffold0176 (513-686)||(3425-3599)
scaffold0176 (620-702)||(483-561)
[»] scaffold0025 (1 HSPs)
scaffold0025 (512-660)||(154288-154437)
[»] scaffold0014 (1 HSPs)
scaffold0014 (630-701)||(84755-84826)
[»] scaffold0199 (1 HSPs)
scaffold0199 (630-691)||(10853-10914)
[»] scaffold0494 (1 HSPs)
scaffold0494 (624-691)||(5500-5567)
[»] scaffold0094 (1 HSPs)
scaffold0094 (624-701)||(31-108)
[»] scaffold0258 (1 HSPs)
scaffold0258 (512-572)||(10263-10323)
[»] scaffold0618 (2 HSPs)
scaffold0618 (535-575)||(3965-4005)
scaffold0618 (624-691)||(4044-4114)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 1e-98; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 422 - 774
Target Start/End: Complemental strand, 9719251 - 9718896
Alignment:
Q  422 gggctgcttctcatcaaaagcccaaatgagaaaattgctgtatacacatttgatacagctgaaaaacatataaaagatgaaaagtccaagcggcagttaa 521  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  9719251 gggctgcttctcatcaaaagcccaaataagaaaattgatgtatacacatttgatacagctgaaaaacatgtaaaagacgaaaagtccaagcggcagttaa 9719152  T
Q  522 ctgccgatga-tctgttacaag--aataga--acagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaag 616  Q
     || ||| || ||| |    ||  ||  |   | |||||||| |||| |||||||| ||||||||||||||||||||||||| || | ||||||||||||    
T  9719151 ttgtcgaggaatctatcggcagttaactgttgatagacatagaagttcccaaaactccaatattgtgttttttgcttccatatgtgcaaatttcacaaag 9719052  T
Q  617 cataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttagnnnnnnnnggtt 716  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||        ||||    
T  9719051 cataagtcatttcaagccaatttcaagcataaaatcaagtaagttttttgaatcttatttcattgttgttttgtgattgaattgttag-tttttttggtt 9718953  T
Q  717 aaatttcgattaagaggttttattgattttatgatagtttaagttgttagaattgtta 774  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  9718952 aaatttcgatt-agaggttttattgattttatgatagtttaggttgttagaattgtta 9718896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 9719664 - 9719487
Alignment:
Q  7 aaaaaatcgctcaagtgaatagatgtagcgtgaattagaccgcgaacacagaacagaacgaaacaagtaattgagagagaaaagggggaagaaggaagta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||  ||||||    
T  9719664 aaaaaatcgctcaagtgaatagatgtagcgtgaattagaccgcgaacacagaacagaacagaacaagtaattgagagagaaaagggg-aagagagaagta 9719566  T
Q  107 ccggcggttctgtggcttgggcgagaccgatggaagaaattctgatggattttctcattggtgaattaggttttcaagc 185  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9719565 ccggcggttctgtagcttgggcgagaccgatggaagaaattctgatggattttctcattggtgaattaggttttcaagc 9719487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 249 - 368
Target Start/End: Complemental strand, 9719423 - 9719304
Alignment:
Q  249 cagtgagtgagcttaaacactagtggttgtttttcaaatcttctccgagaagattcaaaatggattattaggtggaccttatgttaaaattaaaattata 348  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9719423 cagtgagtgagcttaaacactagtggttatttttcaaatcttctccgagaagattcaaaatggattattaggtggaccttatgttaaaattaaaattata 9719324  T
Q  349 aatgccgccaaaatatgaac 368  Q
    ||||||||||||||||||||    
T  9719323 aatgccgccaaaatatgaac 9719304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 554 - 751
Target Start/End: Original strand, 36774809 - 36775006
Alignment:
Q  554 cataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatca 653  Q
    ||||||||||||||||||| || | ||  ||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  36774809 cataggagtttccaaaactccattgttacgttttttgcttccataggtgcgaatttcacaaagcataagccattccaagcgaatttcaagcacaaaatca 36774908  T
Q  654 agtaagttttttgaatcctattgcattgttgttttgtgattgaattgttagnnnnnnnnggttaaatttcgatta-agaggttttattgattttatgat 751  Q
    |||||||||||||||| ||||||||||| | |||||||||||| |||||||        ||||||||| |||||| ||||| |||||||||||||||||    
T  36774909 agtaagttttttgaattctattgcattgctattttgtgattgatttgttagttttttttggttaaattgcgattatagagg-tttattgattttatgat 36775006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 511 - 699
Target Start/End: Original strand, 4909878 - 4910066
Alignment:
Q  511 gcggcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttc 610  Q
    |||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||||||  || | ||| ||||||||  | | ||||| ||| ||||    
T  4909878 gcggcagttaactgccgatgatctgttataagaacagaacaggcatagaagtttccaaaacaccattgttgcgttttttgaattcttaggtgcgattttc 4909977  T
Q  611 acaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaatt 699  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||| ||   ||| ||||||||||||||||||||||||||||    
T  4909978 accaagcataagtcattccaagctaatttcaagcacaaaatcaagtaagttgttatcatcttattgcattgttgttttgtgattgaatt 4910066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 532 - 670
Target Start/End: Original strand, 43887577 - 43887714
Alignment:
Q  532 tctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaa 631  Q
    ||||||| | ||| ||||||| ||||||||||||||||||| || | ||  ||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  43887577 tctgttatatgaacagaacag-cataggagtttccaaaactccattgttacgttttttgcttccataggtgcgaatttcacaaaccataagtcattccaa 43887675  T
Q  632 gccaatttcaagcacaaaatcaagtaagttttttgaatc 670  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43887676 gccaatttcaagcacaaaatcaagtaagttttttgaatc 43887714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 2774845 - 2774731
Alignment:
Q  583 gttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagtt-ttttgaatcctattgcattg 681  Q
    ||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  2774845 gttttttgcttccataggtgcgaatttcacaaaccataagccattccaagccaatttcaagcacaaaatcaagtaagtttttttgaatcctattgcgttg 2774746  T
Q  682 ttgttttgtgattga 696  Q
     | ||||||||||||    
T  2774745 ctattttgtgattga 2774731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 510 - 751
Target Start/End: Original strand, 21410187 - 21410429
Alignment:
Q  510 agcggcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgct-tccataggtacgaatt 608  Q
    ||||| |||||||||||| |||||||||| ||||| | ||||||||||||||||||||||||| || | ||| ||||||||   | | ||||| | | ||    
T  21410187 agcggtagttaactgccgttgatctgttataagaacaaaacagacataggagtttccaaaactccattgttgcgttttttggaattcttaggtgcaattt 21410286  T
Q  609 tcacaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttagnnnn 708  Q
    |||  || ||||||  |||| || |||||||||||||||||||||||||||| ||||||  ||| |||||||| | ||||||||||||||||||||        
T  21410287 tcagcaaacataagctattcgaaaccaatttcaagcacaaaatcaagtaagtgttttgagccctgttgcattggttttttgtgattgaattgttag-ttt 21410385  T
Q  709 nnnnggttaaatttcgatta-agaggttttattgattttatgat 751  Q
        |||||||||||||||| ||||||||| |||||||||||||    
T  21410386 ttttggttaaatttcgattatagaggttttgttgattttatgat 21410429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 554 - 676
Target Start/End: Complemental strand, 22438493 - 22438371
Alignment:
Q  554 cataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatca 653  Q
    ||||| ||||||||||||| || | ||  ||||||||||||||||||| ||||||||||||| |||||| ||||| ||| ||||||||||||||||||||    
T  22438493 catagaagtttccaaaactccattgttacgttttttgcttccataggtgcgaatttcacaaaccataagccattcaaagacaatttcaagcacaaaatca 22438394  T
Q  654 agtaagttttttgaatcctattg 676  Q
    |||||||||||||||||||||||    
T  22438393 agtaagttttttgaatcctattg 22438371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 516 - 752
Target Start/End: Original strand, 33383866 - 33384103
Alignment:
Q  516 agttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaa 615  Q
    |||||||||||||   | ||||| ||||| |||| |||||||||||||||||||||| || | || ||||||||| |  | ||||| ||| ||| |  ||    
T  33383866 agttaactgccgaaattttgttataagaagagaatagacataggagtttccaaaactccattgttatgttttttgatctcctaggtgcgattttgagcaa 33383965  T
Q  616 gcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttagnnnnnnnnggt 715  Q
        ||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| | |||||||| |         ||    
T  33383966 tttcaagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcttattgcattgttgttttgtggtcgaattgtttgtttttttttgt 33384065  T
Q  716 taaatttcgatta-agaggttttattgattttatgata 752  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  33384066 taaatttcgattatataggttttattgattttatgata 33384103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 621 - 704
Target Start/End: Original strand, 51026220 - 51026303
Alignment:
Q  621 agtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||    
T  51026220 agtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgctattttgtgattgatttgttag 51026303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 512 - 681
Target Start/End: Complemental strand, 24076877 - 24076708
Alignment:
Q  512 cggcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttca 611  Q
    |||||||||||| |||||| ||||||| ||||| | ||||||||||||| ||||||||||| || | |||   ||||  || ||||||||| || |||||    
T  24076877 cggcagttaactaccgatgctctgttataagaacataacagacataggaatttccaaaactccattgttgcagttttgactcccataggtatgattttca 24076778  T
Q  612 caaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattg 681  Q
    | |||| |||| ||||||||||||||| ||| ||||||| |||||||||  |||||||||||||||||||    
T  24076777 ccaagcttaagccattccaagccaattacaaacacaaaaccaagtaagtgctttgaatcctattgcattg 24076708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 624 - 752
Target Start/End: Original strand, 955960 - 956089
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttagnnnnnnnnggttaaatttc 723  Q
    ||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||| | |||||||| |         ||||||||||    
T  955960 cattccaagccaatttcaatcacaaaaataagtaagttttttgaatcctattgcattgttgttttgtggtcgaattgtttgatatttgttgttaaatttc 956059  T
Q  724 gatta-agaggttttattgattttatgata 752  Q
    ||||| | ||||||||||||||||||||||    
T  956060 gattatataggttttattgattttatgata 956089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 44558814 - 44558896
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| | ||||||||    
T  44558814 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttattttgtggtcgaattgtt 44558896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 51426704 - 51426786
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  51426704 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgctgttttgtggtcgaattgtt 51426786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 623 - 702
Target Start/End: Complemental strand, 28083895 - 28083816
Alignment:
Q  623 tcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| | ||||||||    
T  28083895 tcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgtt 28083816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 34151779 - 34151862
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaag-ttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||||    
T  34151779 aagtcattccaagccaatttcaatcacaaaaccaagtaagtttttttgaatcctattgcattgttgttttgtggtcgaattgtt 34151862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 624 - 691
Target Start/End: Original strand, 49422259 - 49422326
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  49422259 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgttttgtg 49422326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 619 - 702
Target Start/End: Complemental strand, 49572810 - 49572727
Alignment:
Q  619 taagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||| ||||||| | ||||||||    
T  49572810 taagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgcattgttattttgtggtcgaattgtt 49572727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 620 - 702
Target Start/End: Complemental strand, 37868176 - 37868094
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||||||| |||||||||||||| ||||||| |||||||||||||  ||||||||||||||||||||||| ||||||||||||    
T  37868176 aagtcatttcaagccaatttcaatcacaaaaacaagtaagtttttgtaatcctattgcattgttgttttgcgattgaattgtt 37868094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 56140594 - 56140516
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  56140594 cattccaagccaatttcaatcacaaaaacaagtaagtttttttaatcctattgcattgttgttttgcggttgaattgtt 56140516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 624 - 701
Target Start/End: Original strand, 21015908 - 21015985
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||    
T  21015908 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgt 21015985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 624 - 702
Target Start/End: Original strand, 34528334 - 34528412
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||| | ||||||||    
T  34528334 cattccaagccaatttcaatcacaaaaacaaataagttttctgaatcctattgcattgttgttttgtggtcgaattgtt 34528412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 620 - 691
Target Start/End: Original strand, 6281023 - 6281094
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    |||||||||||| |||||||||| ||||||| |||||||||||||| |||| ||||||||||||||||||||    
T  6281023 aagtcattccaaaccaatttcaatcacaaaaacaagtaagtttttttaatcatattgcattgttgttttgtg 6281094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 624 - 690
Target Start/End: Complemental strand, 37959634 - 37959568
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgt 690  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||    
T  37959634 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctgttgcattgttgtattgt 37959568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 39590471 - 39590393
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||| ||||||||| ||||||| |||||||||||| |||| |||||||||||||||||||||| | ||||||||    
T  39590471 cattccaagtcaatttcaatcacaaaaacaagtaagttttctgaaccctattgcattgttgttttgtggtcgaattgtt 39590393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 512 - 691
Target Start/End: Original strand, 4783703 - 4783879
Alignment:
Q  512 cggcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttca 611  Q
    |||||||||||||||||| |||||||  ||||| |||||| |||||||||||||||||||| || | ||  |||||| | |  | || |||||| ||| |    
T  4783703 cggcagttaactgccgataatctgttttaagaacagaacaaacataggagtttccaaaactccattgttaggtttttggttgtcctaagtacgattttga 4783802  T
Q  612 caaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
      ||    ||| |||||||||| |||||||| ||||||| |||||   ||||||||||| ||||||||||||||||||||    
T  4783803 gcaatttcaagccattccaagctaatttcaatcacaaaaacaagt---ttttttgaatcttattgcattgttgttttgtg 4783879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 532 - 704
Target Start/End: Original strand, 8866830 - 8867001
Alignment:
Q  532 tctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaa 631  Q
    ||||||| ||||| | |||| |||||||| | ||||||||| || | ||| | ||||   |||||||||| ||| |||| | |||| |||||||||||||    
T  8866830 tctgttataagaacaaaacaaacataggaatgtccaaaactccattgttgcggttttgagttccataggtgcgattttctccaagcttaagtcattccaa 8866929  T
Q  632 gccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
     |||||| ||| |||||||||||||||||  |||||||||| |||||| | | |||| | |||||||||||||    
T  8866930 accaattacaaacacaaaatcaagtaagtgctttgaatccttttgcatcggt-tttttttattgaattgttag 8867001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 514 - 702
Target Start/End: Complemental strand, 1044559 - 1044372
Alignment:
Q  514 gcagttaactgccgatgatc-tgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgct-tccataggtacgaatttca 611  Q
    ||||||||||||||| ||   ||||| ||||||||||||||||||||||||||||||||| || | ||  |||||||| | |||| |||| ||| ||| |    
T  1044559 gcagttaactgccgaggaaaatgttataagaatagaacagacataggagtttccaaaactccattgttacgttttttgatctcca-aggtgcgattttga 1044461  T
Q  612 caaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
       |    |||||||| |||||||||||||| ||||||| ||| |||||||||| |||  |||||||||||||||||| | ||||||||||    
T  1044460 gctatttcaagtcatttcaagccaatttcaatcacaaaaacaaataagtttttttaat--tattgcattgttgttttgcggttgaattgtt 1044372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 630 - 701
Target Start/End: Original strand, 41793539 - 41793610
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||    
T  41793539 aagccaattttaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgt 41793610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 514 - 702
Target Start/End: Complemental strand, 9491299 - 9491110
Alignment:
Q  514 gcagttaactgccgatgatc-tgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgct-tccataggtacgaatttca 611  Q
    ||||||||||||||| ||   ||||| ||||| ||||||||||||||||||||||||||| || | ||  |||||||| | |||| |||| ||| ||| |    
T  9491299 gcagttaactgccgaagaaagtgttataagaacagaacagacataggagtttccaaaactccattgttacgttttttgatctcca-aggtgcgattttaa 9491201  T
Q  612 caaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
       |    ||||||||||||| ||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||||| | ||| ||||||    
T  9491200 gctatttcaagtcattccaagtcaatttcaatcacaaaaataagtaagtttttttaatcctattgcattgttattttgcggttgcattgtt 9491110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 624 - 701
Target Start/End: Original strand, 40352505 - 40352582
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||| |||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||| |||||| | |||||||    
T  40352505 cattacaagccaatttcaatcacaaaaacaagtaagttttttgaattctattgcattattgctttgtggtcgaattgt 40352582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 630 - 701
Target Start/End: Complemental strand, 55799427 - 55799356
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||||||||| || ||||||| |||||||||||||||||||||||||| |||||| |||||| | |||||||    
T  55799427 aagccaattttaatcacaaaaacaagtaagttttttgaatcctattgctttgttgctttgtggtcgaattgt 55799356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 513 - 650
Target Start/End: Complemental strand, 47313065 - 47312928
Alignment:
Q  513 ggcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcac 612  Q
    ||||||||||| || ||||||||||| ||||| | ||||| |||  || ||||||||||| || | ||| | |||| | |||||||||| ||| |||       
T  47313065 ggcagttaacttccaatgatctgttataagaacaaaacaggcatgagaatttccaaaactccattgttgcggttttgggttccataggtgcgatttttta 47312966  T
Q  613 aaagcataagtcattccaagccaatttcaagcacaaaa 650  Q
     |||  |||||||||||||||||||||||| |||||||    
T  47312965 caaggttaagtcattccaagccaatttcaaacacaaaa 47312928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 735 - 774
Target Start/End: Original strand, 49816053 - 49816092
Alignment:
Q  735 tttattgattttatgatagtttaagttgttagaattgtta 774  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  49816053 tttattgattttatgatagtttaggttgttagaattgtta 49816092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 572
Target Start/End: Complemental strand, 39590580 - 39590523
Alignment:
Q  516 agttaactgccgatgatc-tgttacaagaatagaacagacataggagtttccaaaact 572  Q
    ||||||||||||||||   ||||| ||||| |||||||||||||||||||||||||||    
T  39590580 agttaactgccgatgaaaatgttataagaacagaacagacataggagtttccaaaact 39590523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 674
Target Start/End: Original strand, 6176052 - 6176096
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctat 674  Q
    |||||||||| || ||||||| |||||||||||||||||||||||    
T  6176052 aagccaattttaatcacaaaaacaagtaagttttttgaatcctat 6176096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 674
Target Start/End: Complemental strand, 49096216 - 49096172
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctat 674  Q
    |||||||||| || ||||||| |||||||||||||||||||||||    
T  49096216 aagccaattttaatcacaaaaacaagtaagttttttgaatcctat 49096172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 534 - 572
Target Start/End: Complemental strand, 56140684 - 56140646
Alignment:
Q  534 tgttacaagaatagaacagacataggagtttccaaaact 572  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  56140684 tgttataagaacagaacagacataggagtttccaaaact 56140646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 530 - 752
Target Start/End: Complemental strand, 2165 - 1941
Alignment:
Q  530 gatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattcc 629  Q
    ||||||||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||||| |||| |||||||||||||||||||| ||||||    
T  2165 gatctgttataagaacagaacagacataggagtttccaaaactccattgttgcattttttgcttccaaaggtgcgaatttcacaaagcataagccattcc 2066  T
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag-nnnnnnnnggttaaatttcgatta 728  Q
    ||| ||||||||||||||||| |||||||||||| ||||| |||||| |||| ||||||||||||||||||||||         ||||||||||||||||    
T  2065 aagtcaatttcaagcacaaaaacaagtaagttttgtgaattctattgtattgatgttttgtgattgaattgttagtttttttttggttaaatttcgatta 1966  T
Q  729 -agaggttttattgattttatgata 752  Q
     || |||||||||||||||||||||    
T  1965 tagtggttttattgattttatgata 1941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 3e-56; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 553 - 704
Target Start/End: Complemental strand, 23344380 - 23344229
Alignment:
Q  553 acataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatc 652  Q
    ||||||||||||||||||||||| | ||  ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23344380 acataggagtttccaaaacttcattgttacgttttttgcttccataggtgcgaatttcacaaagcataagccattccaagccaatttcaagcacaaaatc 23344281  T
Q  653 aagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    ||||||||||||||||| ||||||||||| | |||||||||||| |||||||    
T  23344280 aagtaagttttttgaattctattgcattgctattttgtgattgatttgttag 23344229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 512 - 704
Target Start/End: Original strand, 33285747 - 33285940
Alignment:
Q  512 cggcagttaactgccgatgat--ctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaattt 609  Q
    |||||||||||||||| || |  ||||||   ||| ||||||| ||||||||||||||||||| || | ||  ||||||||||||||||||| |||||||    
T  33285747 cggcagttaactgccgttgctttctgttatttgaacagaacag-cataggagtttccaaaactccattgttacgttttttgcttccataggtgcgaattt 33285845  T
Q  610 cacaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||| |||||||    
T  33285846 cacaatgcataagccattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgctattttttgattgatttgttag 33285940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 553 - 696
Target Start/End: Original strand, 38043549 - 38043692
Alignment:
Q  553 acataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatc 652  Q
    |||||||||||||||||||| || | ||  ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  38043549 acataggagtttccaaaactccattgttacgttttttgcttccataggtgcgaatttcacaaaccataagtcattccaagccaatttcaaacacaaaatc 38043648  T
Q  653 aagtaagttttttgaatcctattgcattgttgttttgtgattga 696  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||    
T  38043649 aagtaagttttttgaatcctattgcgttgctattttgtgattga 38043692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 554 - 696
Target Start/End: Original strand, 39855589 - 39855732
Alignment:
Q  554 cataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcac-aaaatc 652  Q
    ||||||||||||||||||| || | ||  ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  39855589 cataggagtttccaaaactccattgttacgttttttgcttccataggtgcgaatttcacaaaccataagtcattccaagccaatttcaagcacaaaaatc 39855688  T
Q  653 aagtaagttttttgaatcctattgcattgttgttttgtgattga 696  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||    
T  39855689 aagtaagttttttgaatcctattgcgttgctattttgtgattga 39855732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 553 - 704
Target Start/End: Complemental strand, 14441009 - 14440859
Alignment:
Q  553 acataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatc 652  Q
    |||||||||||||||||||| || | || ||||||| | || |  |||| |||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  14441009 acataggagtttccaaaactccactgttatgtttttggatttctcaggtgcgaatttcacaa-gcataagccattccaagccaatttcaagcacaaaatc 14440911  T
Q  653 aagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  14440910 aagtaagttttttgaatcctattgcattgttattttgtgattgatttgttag 14440859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 553 - 704
Target Start/End: Original strand, 40531797 - 40531948
Alignment:
Q  553 acataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatc 652  Q
    ||||||||||||||||||||  | | ||  || |||||||||||||||| |||||||||||||||||| ||||||| | ||||| |||||||| ||||||    
T  40531797 acataggagtttccaaaactctattgttacgtgttttgcttccataggtgcgaatttcacaaagcatacgtcattctacgccaaattcaagcataaaatc 40531896  T
Q  653 aagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    |||||||||||||||||| |||||||||| | |||||||||||| |||||||    
T  40531897 aagtaagttttttgaatcatattgcattgctattttgtgattgatttgttag 40531948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 510 - 656
Target Start/End: Original strand, 12789763 - 12789910
Alignment:
Q  510 agcggcagttaactgccgatgat--ctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaat 607  Q
    |||||||||||||||||| || |  |||||| | ||| |||||||| |||||||||||||||||| || | ||  ||||||||||| ||||||| |||||    
T  12789763 agcggcagttaactgccggtgctttctgttatatgaacagaacaga-ataggagtttccaaaactccattgttacgttttttgctttcataggtgcgaat 12789861  T
Q  608 ttcacaaagcataagtcattccaagccaatttcaagcacaaaatcaagt 656  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12789862 ttcacaaagcataagccattccaagccaatttcaagcacaaaatcaagt 12789910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 534 - 702
Target Start/End: Original strand, 14172167 - 14172335
Alignment:
Q  534 tgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagc 633  Q
    ||||| ||||| |||||||||||||||||||||||||||| | | ||  |||||||| |  | ||||| ||| |||||  ||    ||  ||||||||||    
T  14172167 tgttataagaacagaacagacataggagtttccaaaactttattgttacgttttttgatctcctaggtgcgattttcagcaatttcaaaccattccaagc 14172266  T
Q  634 caatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||| | ||||||||    
T  14172267 caatttcaatcacaaaaacaggtaagttttttgaatcctattgcattgttgttttgtggtcgaattgtt 14172335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 624 - 704
Target Start/End: Original strand, 49260097 - 49260177
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||||||    
T  49260097 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcatattgcattgctattttgtgattgatttgttag 49260177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 620 - 702
Target Start/End: Complemental strand, 41803941 - 41803859
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  41803941 aagtcattccaagccaatttcaatcacaaaaataagtaagttttttgaatcctattgcattgttgttttgtggtcgaattgtt 41803859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 620 - 702
Target Start/End: Complemental strand, 49398378 - 49398296
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  49398378 aagtcattccaaaccaatttcaatcacaaaaacaagtaagttttttgaatcttattgcattgttgttttgtgatcgaattgtt 49398296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 534 - 691
Target Start/End: Complemental strand, 51271584 - 51271427
Alignment:
Q  534 tgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagc 633  Q
    ||||| ||||| |||||||||||||||||||||||||||||| | ||| |||||||  |  | | | | ||| ||| |  ||    ||||||||||||||    
T  51271584 tgttataagaacagaacagacataggagtttccaaaacttcattgttgcgttttttattctccttgctgcgattttgagcaatttgaagtcattccaagc 51271485  T
Q  634 caatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||    
T  51271484 caatttcaatcacaaaaacaagtaagttttatgaatcctattgcattgttgttttgtg 51271427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 622 - 702
Target Start/End: Complemental strand, 18975036 - 18974956
Alignment:
Q  622 gtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  18975036 gtcattccaagccaatttcgatcacaaaaacaagtaagttttttgaatcctattgcattgttgttttgtggtcgaattgtt 18974956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 620 - 691
Target Start/End: Original strand, 49925022 - 49925093
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  49925022 aagtcattccaagccaatttcaatcacaaaaacaagtaagatttttgaatcctattgcattgttgttttgtg 49925093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 26633693 - 26633775
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||| | ||||||||    
T  26633693 aagtcattccaagccaatttcaatcacaaaaacaactaagtttttttaatcctattgcattgttgttttgtggtcgaattgtt 26633775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 624 - 702
Target Start/End: Original strand, 44336419 - 44336497
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  44336419 cattccaagccaatttcaatcacaaaaacaagtaagtttttttaatcctattgcattgttgttttgcggttgaattgtt 44336497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 583 - 704
Target Start/End: Original strand, 15355171 - 15355281
Alignment:
Q  583 gttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgt 682  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||           ||||||||||| ||| ||||||||||||||||||||||     
T  15355171 gttttttgtttccataggtgcgaatttcacaaagcataagtcattccaag-----------cacaaaatcaaataaattttttgaatcctattgcattgc 15355259  T
Q  683 tgttttgtgattgaattgttag 704  Q
    | |||||||||||| |||||||    
T  15355260 tattttgtgattgatttgttag 15355281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 29760669 - 29760751
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||| ||||||||||||| |||||||  ||||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  29760669 aagtcattctaagccaatttcaatcacaaaaagaagtaagtttttttaatcctattgcattgttgttttgcggttgaattgtt 29760751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 42570288 - 42570370
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||| ||| ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||    
T  42570288 aagtcattcaaagtcaatttcaatcacaaaaacaagtaagttttttgaatcttattgcattgttgttttgtggtcgaattgtt 42570370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 625 - 691
Target Start/End: Original strand, 46141937 - 46142003
Alignment:
Q  625 attccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  46141937 attccaagccaatttcaatcacaaaaacaagtgagttttttgaatcctattgcattgttgttttgtg 46142003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 546 - 691
Target Start/End: Complemental strand, 13149029 - 13148890
Alignment:
Q  546 agaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagca 645  Q
    ||||||||||||||||||||||||||| || | || ||||||| | |  | ||||||||| ||| |    |||  |||||||||| ||||||||||| ||    
T  13149029 agaacagacataggagtttccaaaactccattgttatgtttttggttctcctaggtacgattttga----gca--agtcattccaggccaatttcaatca 13148936  T
Q  646 caaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||||    
T  13148935 caaaaacaagtaagtttttttaatcctattgcatcgttgttttgtg 13148890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 624 - 701
Target Start/End: Original strand, 13634035 - 13634112
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||    
T  13634035 cattacaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgt 13634112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 624 - 701
Target Start/End: Original strand, 19162061 - 19162138
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| |||||| | |||||||    
T  19162061 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcatttttgctttgtggtcgaattgt 19162138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 704
Target Start/End: Original strand, 19260970 - 19261135
Alignment:
Q  540 aagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaattt 639  Q
    ||||| |||||||||||| || ||||||||||| || | ||| | ||||   |||||||||| ||| | |||| |||| |||| |||||||||||||||     
T  19260970 aagaacagaacagacatatgaatttccaaaactccattgttgcggttttgatttccataggtgcgattctcaccaagcttaagccattccaagccaatta 19261069  T
Q  640 caagcacaaaatcaagtaagttttttgaatcctattgcatt-gttgttttgtgattgaattgttag 704  Q
    ||| || ||||||||||||||   ||||||||||||||||| ||| |||| | |||||||||||||    
T  19261070 caaacataaaatcaagtaagtgcattgaatcctattgcattagtttttttattattgaattgttag 19261135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 620 - 688
Target Start/End: Complemental strand, 44598813 - 44598745
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgtttt 688  Q
    |||||||||||||||||||||||  |||||| |||||||||||||| ||||||||||||||||||||||    
T  44598813 aagtcattccaagccaatttcaataacaaaaacaagtaagtttttttaatcctattgcattgttgtttt 44598745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 6437443 - 6437365
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||| |||| ||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| | ||||||||    
T  6437443 cattacaagtcaatttcaatcacaaaaacaagtaaattttttgaatcctattgcattgttgttttgtggtcgaattgtt 6437365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 36911599 - 36911521
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||| |||||||||||||| ||||||| || |||||||||||||||| |||||||||||||||||||| | ||||||||    
T  36911599 catttcaagccaatttcaatcacaaaaacaggtaagttttttgaatcttattgcattgttgttttgtggtcgaattgtt 36911521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 619 - 703
Target Start/End: Original strand, 14771288 - 14771372
Alignment:
Q  619 taagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtta 703  Q
    |||||||||||||||||||||||||||||||||||||||||||  |   |||||||| ||||  |||||||||||||| ||||||    
T  14771288 taagtcattccaagccaatttcaagcacaaaatcaagtaagttgatatcatcctattacatttctgttttgtgattgatttgtta 14771372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 624 - 704
Target Start/End: Complemental strand, 17373890 - 17373810
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    |||||| || |||||||||||| |||||||||||||| |||||||||||||| ||||| | |||||| |||||||||||||    
T  17373890 cattccgagtcaatttcaagcaaaaaatcaagtaagtgttttgaatcctattacattgattttttgttattgaattgttag 17373810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 621 - 704
Target Start/End: Complemental strand, 13285253 - 13285170
Alignment:
Q  621 agtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    ||||||| |||| ||||||||| ||||||||||||||||| |||||||| |||||||| || | |||||| |||||||||||||    
T  13285253 agtcatttcaaggcaatttcaatcacaaaatcaagtaagtgttttgaattctattgcaatggttttttgttattgaattgttag 13285170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 620 - 702
Target Start/End: Complemental strand, 49429069 - 49428987
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||| ||||||||||||| ||||||| |||||||||||||||| | || ||||||||||| |||||| | ||||||||    
T  49429069 aagtcattctaagccaatttcaatcacaaaaacaagtaagttttttgattacttttgcattgttgctttgtggtcgaattgtt 49428987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 624 - 689
Target Start/End: Original strand, 27485203 - 27485267
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttg 689  Q
    ||||||||||||||||||| ||||||| ||||||| |||||| |||||||||||||||||||||||    
T  27485203 cattccaagccaatttcaatcacaaaaacaagtaa-tttttttaatcctattgcattgttgttttg 27485267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 512 - 572
Target Start/End: Original strand, 24362346 - 24362407
Alignment:
Q  512 cggcagttaactgccgatgatctgttacaag-aatagaacagacataggagtttccaaaact 572  Q
    ||||||||||||||||||||||||||| ||| || | |||||||||||||||||||||||||    
T  24362346 cggcagttaactgccgatgatctgttataagaaaaaaaacagacataggagtttccaaaact 24362407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 657 - 702
Target Start/End: Original strand, 24362488 - 24362533
Alignment:
Q  657 aagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  24362488 aagttttttgaatcctattgcattgttgttttgtggttgaattgtt 24362533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 629 - 702
Target Start/End: Original strand, 35524903 - 35524976
Alignment:
Q  629 caagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||| || |||||||  || |||||||||||||||||||||||||| ||||||||| | ||||||||    
T  35524903 caagccaatttaaatcacaaaaataattaagttttttgaatcctattgcattgctgttttgtggtcgaattgtt 35524976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 572
Target Start/End: Complemental strand, 26497900 - 26497842
Alignment:
Q  514 gcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaact 572  Q
    ||||||||||||||||| ||||||| ||||| |||||| |||||| |||||||||||||    
T  26497900 gcagttaactgccgatgttctgttataagaacagaacatacatagaagtttccaaaact 26497842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 654 - 691
Target Start/End: Complemental strand, 29437597 - 29437560
Alignment:
Q  654 agtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29437597 agtaagttttttgaatcctattgcattgttgttttgtg 29437560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 534 - 572
Target Start/End: Original strand, 27485113 - 27485151
Alignment:
Q  534 tgttacaagaatagaacagacataggagtttccaaaact 572  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  27485113 tgttataagaatagaacagacataggagtttccaaaact 27485151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 713 - 774
Target Start/End: Complemental strand, 35186698 - 35186637
Alignment:
Q  713 ggttaaatttcgatta-agaggttttattgattttatgatagtttaagttgttagaattgtta 774  Q
    ||||||||| |||||| |||||||| |||||||||||||||||||| |||||| |||||||||    
T  35186698 ggttaaattgcgattatagaggttt-attgattttatgatagtttaggttgtttgaattgtta 35186637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 713 - 774
Target Start/End: Original strand, 35585431 - 35585492
Alignment:
Q  713 ggttaaatttcgatta-agaggttttattgattttatgatagtttaagttgttagaattgtta 774  Q
    ||||||||| |||||| |||||||| |||||||||||||||||||| |||||| |||||||||    
T  35585431 ggttaaattgcgattatagaggttt-attgattttatgatagtttaggttgtttgaattgtta 35585492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 572
Target Start/End: Original strand, 16530613 - 16530669
Alignment:
Q  516 agttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaact 572  Q
    |||||||||||| | |||||||| || ||  ||||||||||||||||||||||||||    
T  16530613 agttaactgccgctcatctgttataaaaacggaacagacataggagtttccaaaact 16530669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 572
Target Start/End: Complemental strand, 49398485 - 49398425
Alignment:
Q  512 cggcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaact 572  Q
    |||| ||||||||||||  || ||||| ||||| | |||||||||||||||||||||||||    
T  49398485 cggctgttaactgccgaaaatttgttataagaacataacagacataggagtttccaaaact 49398425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 532 - 575
Target Start/End: Original strand, 39063288 - 39063331
Alignment:
Q  532 tctgttacaagaatagaacagacataggagtttccaaaacttca 575  Q
    ||||||| ||||| |||||||||||| |||||||||||||||||    
T  39063288 tctgttataagaacagaacagacataagagtttccaaaacttca 39063331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 644 - 703
Target Start/End: Original strand, 39063400 - 39063459
Alignment:
Q  644 cacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtta 703  Q
    |||||||||||||||||| ||  ||||||||| ||||| | |||||||||||| ||||||    
T  39063400 cacaaaatcaagtaagttgttataatcctattacattgctattttgtgattgatttgtta 39063459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 48228215 - 48228141
Alignment:
Q  624 cattccaagccaatttcaagcac-aaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||     |||||||||||| |||||| | ||||||||    
T  48228215 cattccaagccaatttcaatcacaaaaaacaagtaagttttttga-----attgcattgttgctttgtggtcgaattgtt 48228141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 626 - 699
Target Start/End: Complemental strand, 13974627 - 13974553
Alignment:
Q  626 ttccaagccaatttcaagcacaaaatcaagtaagtttttt-gaatcctattgcattgttgttttgtgattgaatt 699  Q
    ||||||| || |||||| |||||||  || |||||||||| ||||| |||||||||||||||||| ||| |||||    
T  13974627 ttccaagtcagtttcaatcacaaaaataaataagtttttttgaatcatattgcattgttgttttgggatcgaatt 13974553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 534 - 572
Target Start/End: Original strand, 44336329 - 44336367
Alignment:
Q  534 tgttacaagaatagaacagacataggagtttccaaaact 572  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  44336329 tgttataagaacagaacagacataggagtttccaaaact 44336367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 8e-54; HSPs: 54)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 553 - 704
Target Start/End: Complemental strand, 51017158 - 51017007
Alignment:
Q  553 acataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatc 652  Q
    |||||||||||||||||||| || | ||  ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  51017158 acataggagtttccaaaactccattgttacgttttttgcttccataggtgcgaatttcacaaagcataagtcattccaaaccaatttctagcacaaaatc 51017059  T
Q  653 aagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    ||||||||||||||||||||||||||||| | |||||||||||| |||||||    
T  51017058 aagtaagttttttgaatcctattgcattgatattttgtgattgatttgttag 51017007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 532 - 704
Target Start/End: Original strand, 42321806 - 42321977
Alignment:
Q  532 tctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaa 631  Q
    ||||||| | ||| ||||||| ||||||||||||||||||| || | ||  ||||||||||||||||||| |||||||||||||||||||| |||| |||    
T  42321806 tctgttatatgaacagaacag-cataggagtttccaaaactccattgttacgttttttgcttccataggtgcgaatttcacaaagcataagccatttcaa 42321904  T
Q  632 gccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  42321905 gccaatttaaagcaaaaaatcaagtaagttttttgaatcctattgcattgttattttgtgattgatttgttag 42321977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 511 - 757
Target Start/End: Complemental strand, 18442139 - 18441892
Alignment:
Q  511 gcggcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttc 610  Q
    ||||||||||||| |||||||||||||| ||||| | |||| ||||||||||||| |||||| || | ||| ||||||    | | ||||| ||| ||||    
T  18442139 gcggcagttaactaccgatgatctgttataagaacataacaaacataggagtttctaaaactgcattgttgcgtttttgatattcctaggtgcgattttc 18442040  T
Q  611 acaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttagnnnnnn 710  Q
    || | ||  |||||||||||||||||||  ||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||          
T  18442039 accaggctaaagtcattccaagccaattctaagcacataatcaagtaagtgttttgaatcatattgcattgttgttttgtgattgaattgttagttttgt 18441940  T
Q  711 nnggttaaatttcgatta-agaggttttattgattttatgatagttta 757  Q
      |||||||||||||||| ||||||||||| |||||||||||||||||    
T  18441939 ttggttaaatttcgattatagaggttttatagattttatgatagttta 18441892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 511 - 757
Target Start/End: Complemental strand, 19487213 - 19486966
Alignment:
Q  511 gcggcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttc 610  Q
    ||||||||||||| |||||||||||||| ||||| | |||| ||||||||||||| |||||| || | ||| ||||||    | | ||||| ||| ||||    
T  19487213 gcggcagttaactaccgatgatctgttataagaacataacaaacataggagtttctaaaactgcattgttgcgtttttgatattcctaggtgcgattttc 19487114  T
Q  611 acaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttagnnnnnn 710  Q
    || | ||  |||||||||||||||||||  ||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||          
T  19487113 accaggctaaagtcattccaagccaattctaagcacataatcaagtaagtgttttgaatcatattgcattgttgttttgtgattgaattgttagttttgt 19487014  T
Q  711 nnggttaaatttcgatta-agaggttttattgattttatgatagttta 757  Q
      |||||||||||||||| ||||||||||| |||||||||||||||||    
T  19487013 ttggttaaatttcgattatagaggttttatagattttatgatagttta 19486966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 512 - 757
Target Start/End: Original strand, 20374279 - 20374515
Alignment:
Q  512 cggcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttca 611  Q
    ||||| ||||| | ||||||||||||| ||||| ||||||||||||||||||||||||||| || | ||| ||||||   |  | ||||| ||| |||||    
T  20374279 cggcaattaaccgtcgatgatctgttataagaacagaacagacataggagtttccaaaactccattgttgcgtttttcattctcttaggtgcgattttca 20374378  T
Q  612 caaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttagnnnnnnn 711  Q
              | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||           
T  20374379 ----------gccattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttatgattgaattgttagttttttt 20374468  T
Q  712 nggttaaatttcgatta-agaggttttattgattttatgatagttta 757  Q
     |||||||||||||||| |||||||||||||||||| ||||||||||    
T  20374469 tggttaaatttcgattatagaggttttattgattttctgatagttta 20374515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 553 - 704
Target Start/End: Original strand, 34470406 - 34470563
Alignment:
Q  553 acataggagtttccaaaacttcaat---attgt---gttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcac 646  Q
    ||||||||||||||||||||||| |   |||||   || |||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||    
T  34470406 acataggagtttccaaaacttcattgttattgttacgtattttgcttccataggtgcgaatttcacaaagcataaaccattccaagccaatttcaagcac 34470505  T
Q  647 aaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||    
T  34470506 aaaatcaagtaagttttttgaatcctattgcattgctattttgtgattgatttgttag 34470563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 554 - 696
Target Start/End: Complemental strand, 44929336 - 44929194
Alignment:
Q  554 cataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatca 653  Q
    ||||||||||||||||||| || | ||   |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44929336 cataggagtttccaaaactccattgttacattttttgcttccataggtgcgaatttcacaaagcataagtcattccaagtcaatttcaagcacaaaatca 44929237  T
Q  654 agtaagttttttgaatcctattgcattgttgttttgtgattga 696  Q
    |||||||||||||||||||||||  ||| | ||||||||||||    
T  44929236 agtaagttttttgaatcctattgtgttgctattttgtgattga 44929194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 582 - 704
Target Start/End: Original strand, 10051731 - 10051853
Alignment:
Q  582 tgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattg 681  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  10051731 tgttttttgcttccataggtgcgaatttcacaaagcataagccattctaagccaatttcaagcacaaaatcaagtaaggtttttgaatcatattgcattg 10051830  T
Q  682 ttgttttgtgattgaattgttag 704  Q
     | |||||||||||| |||||||    
T  10051831 ctattttgtgattgatttgttag 10051853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 583 - 704
Target Start/End: Complemental strand, 49275231 - 49275110
Alignment:
Q  583 gttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgt 682  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||     
T  49275231 gttttttgcttccataggtgcgaatttcacaaagcataagtcatttcaagccaatttcaagcacaaaattaagtaagtttttttaatcctattgcattgc 49275132  T
Q  683 tgttttgtgattgaattgttag 704  Q
    | ||||| |||||| |||||||    
T  49275131 tattttgcgattgatttgttag 49275110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 554 - 696
Target Start/End: Original strand, 11377345 - 11377487
Alignment:
Q  554 cataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatca 653  Q
    |||||||||||||||||||  | | ||  |||||||||||| |||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |    
T  11377345 cataggagtttccaaaactcaattgttacgttttttgcttcaataggtgcgaatttcacaaaccataagccattccaagccaatttcaagcacaaaatta 11377444  T
Q  654 agtaagttttttgaatcctattgcattgttgttttgtgattga 696  Q
    | ||||||||| |||||| ||||| ||| | ||||||||||||    
T  11377445 attaagtttttcgaatccaattgcgttgctattttgtgattga 11377487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 51011700 - 51011813
Alignment:
Q  583 gttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgt 682  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| ||||||| |||||| ||| |||     
T  51011700 gttttttgcttccataggtgcgaatttcacaaaccataagtcattcgaagtcaatttcaagcacaaaatcaagtaaattttttgtatcctactgcgttgc 51011799  T
Q  683 tgttttgtgattga 696  Q
    | ||||||||||||    
T  51011800 tattttgtgattga 51011813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 597 - 751
Target Start/End: Original strand, 27096130 - 27096285
Alignment:
Q  597 taggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattga 696  Q
    ||||| ||| |||||| |||| |||| |||||||||||||||  ||| | |||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  27096130 taggtgcgattttcaccaagcttaagccattccaagccaattctaaggaaaaaatcaagtaagtgttttgaatcctattgcattgctgtgttgtgattga 27096229  T
Q  697 attgttagnnnnnnnnggttaaatttcgatta-agaggttttattgattttatgat 751  Q
    ||||||||        |||||||||||||||| ||| |||||||||||||||||||    
T  27096230 attgttagttgtttttggttaaatttcgattatagatgttttattgattttatgat 27096285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 516 - 704
Target Start/End: Original strand, 8397628 - 8397814
Alignment:
Q  516 agttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaa 615  Q
    ||||||||| ||||| ||||||| ||||| | ||||||||||| | |||||||||||||| | ||| |||||    |||  ||| | ||| |||||| ||    
T  8397628 agttaactgtcgatgctctgttataagaacaaaacagacatagtaatttccaaaacttcattgttgcgttttgaaattct-tagatgcgattttcaccaa 8397726  T
Q  616 gcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    || |||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | |||| | |||||||||||||    
T  8397727 gcttaagtc-ttccaagccaattacaagcacaaaatcaagtaagtgttttgaatcctattgcattggtttttttttattgaattgttag 8397814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 621 - 704
Target Start/End: Original strand, 50457665 - 50457748
Alignment:
Q  621 agtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| |||||||    
T  50457665 agtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcatcgctattttgtgattgatttgttag 50457748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 512 - 704
Target Start/End: Original strand, 50340902 - 50341092
Alignment:
Q  512 cggcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttca 611  Q
    ||||||||||||||||||| ||||||  ||||| ||||||||| ||||| |||||||||||||| | ||| | ||||  ||||||| | | ||| |||||    
T  50340902 cggcagttaactgccgatgctctgtttgaagaacagaacagacgtaggaatttccaaaacttcattgttgcggttttgacttccatggatgcgattttca 50341001  T
Q  612 caaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    | |||| |||| |||| ||| | | || ||| |||||||||||||||||  ||||||||||||||||||||| |||| | |||||||||||||    
T  50341002 ccaagcttaagccatt-caacctatttacaaacacaaaatcaagtaagtgctttgaatcctattgcattgtt-tttttttattgaattgttag 50341092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 620 - 691
Target Start/End: Original strand, 55267581 - 55267652
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  55267581 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgttttgtg 55267652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 2267221 - 2267303
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| | ||||||||    
T  2267221 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgtt 2267303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 52567924 - 52568006
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  52567924 aagtcattccaagtcaatttcaatcacaaaaacaagtaagttttttgaatcatattgcattgttgttttgtggttgaattgtt 52568006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 620 - 691
Target Start/End: Complemental strand, 36136506 - 36136435
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  36136506 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtg 36136435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 620 - 691
Target Start/End: Complemental strand, 50998562 - 50998491
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  50998562 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtg 50998491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 620 - 691
Target Start/End: Original strand, 55205433 - 55205504
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  55205433 aagtcattccaagccaattttaatcacaaaaacaagtaagttttttgaatcctattgcattgttgttttgtg 55205504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 624 - 702
Target Start/End: Original strand, 45098974 - 45099052
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||| |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45098974 cattccaagtcaattttaatcacaaaaacaagtaagttttttgaatcctattgcattgttgttttgtggttgaattgtt 45099052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 625 - 702
Target Start/End: Complemental strand, 2430180 - 2430103
Alignment:
Q  625 attccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  2430180 attccaagctaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgttttgtggtcgaattgtt 2430103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 624 - 691
Target Start/End: Original strand, 44490515 - 44490582
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  44490515 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcttattgcattgttgttttgtg 44490582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 34691791 - 34691873
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||||||||||||| |||||||| ||||||| ||||||||| || ||||||||||||||||||||||||||| | ||||||||    
T  34691791 aagtcattccaagctaatttcaatcacaaaaacaagtaagtattctgaatcctattgcattgttgttttgtggtcgaattgtt 34691873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 43571587 - 43571509
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||| ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  43571587 cattccaagtcaatttcaatcacagaaacaagtaagttttttgaatcctattgcattgttgttttgtggtcgaattgtt 43571509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 624 - 702
Target Start/End: Original strand, 46345096 - 46345174
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||||||| |||||||||||||| |||| |||||||||||||||||||| | ||||||||    
T  46345096 cattccaagccaatttcaatcacaaaaacaagtaagtttttttaatcttattgcattgttgttttgtggtcgaattgtt 46345174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 49217256 - 49217338
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||||||||||| |||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||   ||||||||||    
T  49217256 aagtcattccaaaccaatttcaatcacaaaaacaagtaagtttttttaatcctattgcattgttgttttgctgttgaattgtt 49217338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 534 - 702
Target Start/End: Original strand, 13894306 - 13894474
Alignment:
Q  534 tgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagc 633  Q
    ||||| ||||| ||||||||||||||||||||||||||| || | || ||||||||| |  |  |||| ||| ||| |   |    ||||||||||||||    
T  13894306 tgttataagaacagaacagacataggagtttccaaaactccattgttatgttttttgatctcgaaggtgcgattttgagctatttcaagtcattccaagc 13894405  T
Q  634 caatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||| ||| ||| |||||| ||||||| ||||||||||||||||||||||| | || |||||||    
T  13894406 caatttcaatcaccaaaacaagtaggtttttttaatcctattgcattgttgttttgcggttaaattgtt 13894474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 620 - 691
Target Start/End: Original strand, 24700887 - 24700958
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||||||| ||||| || |||| ||||||||||||||||||| ||||||||||||||||||||    
T  24700887 aagtcattccaagccaaattcaatcaaaaaaacaagtaagttttttgaatcttattgcattgttgttttgtg 24700958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 41579638 - 41579559
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagtt-ttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| |||||||||| | ||||||||    
T  41579638 cattccaagccaatttcaatcacaaaaacaagtaagtttttttgaatcctattgcattattgttttgtggtcgaattgtt 41579559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 620 - 691
Target Start/End: Complemental strand, 41805582 - 41805511
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||  ||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  41805582 aagtcattccaaatcaatttcaatcacaaaaacaagtaagtttttttaatcctattgcattgttgttttgtg 41805511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 43478733 - 43478654
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagtt-ttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||||||| |||||||||| |||| ||||||||||||||||||||||| | ||||||||||    
T  43478733 cattccaagccaatttcaatcacaaaaacaagtaagttttttttaatcctattgcattgttgttttgcggttgaattgtt 43478654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 4002879 - 4002960
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||| ||||||||||||||| || ||||||| ||||||||||||| |||||||||||||||||||||||||| | ||||||||    
T  4002879 aagttattccaagccaattt-aatcacaaaaacaagtaagtttttagaatcctattgcattgttgttttgtggtcgaattgtt 4002960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 620 - 701
Target Start/End: Original strand, 2645621 - 2645702
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||||||| ||||||||||| || ||||||| ||||||||||||||||||||||||| ||||||| |||||| | |||||||    
T  2645621 aagtcattacaagccaattttaatcacaaaaacaagtaagttttttgaatcctattgtattgttgctttgtggtcgaattgt 2645702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 630 - 691
Target Start/End: Original strand, 3493760 - 3493821
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  3493760 aagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtg 3493821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 630 - 691
Target Start/End: Original strand, 3497454 - 3497515
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  3497454 aagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtg 3497515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 622 - 691
Target Start/End: Complemental strand, 7247776 - 7247707
Alignment:
Q  622 gtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||| ||||||||| || ||||  |||||||||||||||||||||||||||||||||||||||    
T  7247776 gtcattccaagtcaatttcaatcaaaaaaataagtaagttttttgaatcctattgcattgttgttttgtg 7247707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 624 - 702
Target Start/End: Original strand, 34645730 - 34645807
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||| | ||||||| |||||||||||||||||||||| || |||||||||||||| | ||||||||    
T  34645730 cattccaagccaatttcgatcacaaaaacaagtaagttttttgaatccta-tgtattgttgttttgtggtcgaattgtt 34645807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 51694044 - 51694126
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||| ||||||||| ||||||| |||||||||||||  |||| |||||||||||||||||| | || |||||||    
T  51694044 aagtcattccaagtcaatttcaatcacaaaaacaagtaagtttttctaatcttattgcattgttgttttgcggttaaattgtt 51694126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 620 - 688
Target Start/End: Complemental strand, 16484363 - 16484294
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagt-aagttttttgaatcctattgcattgttgtttt 688  Q
    |||||||||||||||||||||||  |||||| ||||| ||||||||| ||||||||||||||||||||||    
T  16484363 aagtcattccaagccaatttcaataacaaaaacaagttaagtttttttaatcctattgcattgttgtttt 16484294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 620 - 691
Target Start/End: Original strand, 44223186 - 44223257
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    |||||||| ||| |||||||||| ||||||| |||||||||||||| |||| ||| ||||||||||||||||    
T  44223186 aagtcatttcaaaccaatttcaatcacaaaaacaagtaagtttttttaatcttatcgcattgttgttttgtg 44223257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 512 - 569
Target Start/End: Original strand, 34645619 - 34645676
Alignment:
Q  512 cggcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaa 569  Q
    |||||||||||||||||  |||||||| ||||| | ||||||||||||||||||||||    
T  34645619 cggcagttaactgccgaaaatctgttataagaacataacagacataggagtttccaaa 34645676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 572
Target Start/End: Complemental strand, 2432955 - 2432899
Alignment:
Q  516 agttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaact 572  Q
    |||||||||||||  ||  |||| |||||||||||||||||||||||||||||||||    
T  2432955 agttaactgccgaaaattggttataagaatagaacagacataggagtttccaaaact 2432899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 534 - 681
Target Start/End: Original strand, 19440336 - 19440483
Alignment:
Q  534 tgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagc 633  Q
    ||||| ||||| |||||||||||| |||||||||||||| || | ||| |||||||  |  | | ||||||| ||| |  ||    |||| ||| ||||     
T  19440336 tgttataagaacagaacagacataagagtttccaaaactccattgttgcgttttttattctccttggtacgattttaaacaatttgaagtaatttcaagt 19440435  T
Q  634 caatttcaagcacaaaatcaagtaagttttttgaatcctattgcattg 681  Q
    ||||||||| ||||||| ||||||| |||| |||||||||||||||||    
T  19440436 caatttcaatcacaaaaacaagtaacttttgtgaatcctattgcattg 19440483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 674
Target Start/End: Original strand, 2950541 - 2950585
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctat 674  Q
    |||||||||| || ||||||| |||||||||||||||||||||||    
T  2950541 aagccaattttaatcacaaaaacaagtaagttttttgaatcctat 2950585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 553 - 681
Target Start/End: Complemental strand, 7988400 - 7988273
Alignment:
Q  553 acataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatc 652  Q
    |||||||| |||| |||||| |  | ||||| ||||  |||||||| || ||| |||||| |||| |||  ||||||||||||||| ||| ||| ||||     
T  7988400 acataggaatttctaaaactcccttgttgtggttttgacttccatatgtgcgattttcaccaagcttaaaccattccaagccaattacaaacac-aaatt 7988302  T
Q  653 aagtaagttttttgaatcctattgcattg 681  Q
    || |||||  |||||||||||||||||||    
T  7988301 aactaagtgctttgaatcctattgcattg 7988273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 674
Target Start/End: Complemental strand, 34051211 - 34051167
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctat 674  Q
    |||||||||| || ||||||| |||||||||||||||||||||||    
T  34051211 aagccaattttaatcacaaaaacaagtaagttttttgaatcctat 34051167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 575
Target Start/End: Original strand, 46345017 - 46345057
Alignment:
Q  535 gttacaagaatagaacagacataggagtttccaaaacttca 575  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  46345017 gttataagaacagaacagacataggagtttccaaaacttca 46345057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 674
Target Start/End: Complemental strand, 46406489 - 46406445
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctat 674  Q
    |||||||||| || ||||||| |||||||||||||||||||||||    
T  46406489 aagccaattttaatcacaaaaacaagtaagttttttgaatcctat 46406445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 674
Target Start/End: Original strand, 49138789 - 49138833
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctat 674  Q
    |||||||||| || ||||||| |||||||||||||||||||||||    
T  49138789 aagccaattttaatcacaaaaacaagtaagttttttgaatcctat 49138833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 774
Target Start/End: Complemental strand, 14633141 - 14633102
Alignment:
Q  735 tttattgattttatgatagtttaagttgttagaattgtta 774  Q
    ||||||||||||||||||||||| |||||| |||||||||    
T  14633141 tttattgattttatgatagtttaggttgtttgaattgtta 14633102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 534 - 572
Target Start/End: Complemental strand, 43478823 - 43478785
Alignment:
Q  534 tgttacaagaatagaacagacataggagtttccaaaact 572  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  43478823 tgttataagaacagaacagacataggagtttccaaaact 43478785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 774
Target Start/End: Complemental strand, 27188764 - 27188735
Alignment:
Q  745 ttatgatagtttaagttgttagaattgtta 774  Q
    ||||||||||||||||||||||||||||||    
T  27188764 ttatgatagtttaagttgttagaattgtta 27188735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 1e-52; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 555 - 704
Target Start/End: Original strand, 20876415 - 20876564
Alignment:
Q  555 ataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatcaa 654  Q
    |||||||||||||||||| || | ||  ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  20876415 ataggagtttccaaaactccattgttacgttttttgcttccataggtgcgaatttcacaaagcataagccattccaagccaattccaagcacaaaatcaa 20876514  T
Q  655 gtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    ||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  20876515 gtaagttttttgaatcctattgcattgttattttttgattgatttgttag 20876564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 514 - 704
Target Start/End: Complemental strand, 4231270 - 4231080
Alignment:
Q  514 gcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcaca 613  Q
    |||||||||||  ||| |||||||| ||||| ||||||||||||||| ||||||||| |||| ||||| |||||| |  | | ||||| ||| ||||||     
T  4231270 gcagttaactgttgataatctgttataagaacagaacagacataggaatttccaaaatttcattattgcgtttttggaattcttaggtgcgattttcacc 4231171  T
Q  614 aagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||| ||||||||||||||||||||||    
T  4231170 aagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttgttatcatcctattgcattgctgttttgtgattgaattgttag 4231080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 553 - 696
Target Start/End: Complemental strand, 22292711 - 22292568
Alignment:
Q  553 acataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatc 652  Q
    |||||||||||||||||| | || | ||  ||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  22292711 acataggagtttccaaaaatccattgttacgttttttgcttccataggtgcgaatttcacaaaccataagccattccaagccaatttcaagcacaaaatc 22292612  T
Q  653 aagtaagttttttgaatcctattgcattgttgttttgtgattga 696  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||    
T  22292611 aagtaagttttttgaatcctattgcgttgctattttgtgattga 22292568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 553 - 677
Target Start/End: Original strand, 43349738 - 43349862
Alignment:
Q  553 acataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatc 652  Q
    |||||||||||||||||||| || | ||  |||||||| |||||||||| ||||||||||||| |||||| ||||| |||||||||||||||||||||||    
T  43349738 acataggagtttccaaaactccattgttacgttttttggttccataggtgcgaatttcacaaaccataagccattcgaagccaatttcaagcacaaaatc 43349837  T
Q  653 aagtaagttttttgaatcctattgc 677  Q
    |||||||||||||||||||||||||    
T  43349838 aagtaagttttttgaatcctattgc 43349862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 554 - 696
Target Start/End: Complemental strand, 17185043 - 17184901
Alignment:
Q  554 cataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatca 653  Q
    ||||||||||||||||||| || | ||   |||||||||||||||||| |||||||||||||  ||||| ||||||||||||||||||| ||||||||||    
T  17185043 cataggagtttccaaaactccattgttacattttttgcttccataggtgcgaatttcacaaactataagccattccaagccaatttcaatcacaaaatca 17184944  T
Q  654 agtaagttttttgaatcctattgcattgttgttttgtgattga 696  Q
    | ||||||||| |||||| | ||  ||| | ||||||||||||    
T  17184943 attaagtttttcgaatccaactgtgttgctattttgtgattga 17184901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 28112948 - 28113030
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  28112948 aagtcattccaaaccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgttttgtggtcgaattgtt 28113030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 36392291 - 36392373
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||| | ||||||||    
T  36392291 aagtcattccaagccaatttcaatcacaaaaacaagtaagtttttagaatcctattgcattgttgttttgtggtcgaattgtt 36392373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 624 - 704
Target Start/End: Original strand, 1641045 - 1641125
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||||||    
T  1641045 cattccaagccaatttcaatcacaaaatcaagtaagtgttttgaatcatattgcattggttttttgtgattgaattgttag 1641125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 624 - 704
Target Start/End: Complemental strand, 42736772 - 42736692
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| | |||||||||| |||||||    
T  42736772 cattccaagccaatttcaagcacaaaatcaagtaagtttttttaatcttattgcattgttatattgtgattgatttgttag 42736692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 620 - 691
Target Start/End: Complemental strand, 10524239 - 10524168
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  10524239 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtg 10524168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 512 - 702
Target Start/End: Original strand, 46860568 - 46860748
Alignment:
Q  512 cggcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttca 611  Q
    |||||||||||||||||  || ||||| ||||| ||||||||||||||||||||||||||| || | ||| | |||||| |  | ||||| ||| ||| |    
T  46860568 cggcagttaactgccgaaaatttgttataagaacagaacagacataggagtttccaaaactccattgttgcggtttttgatctcctaggtgcgattttta 46860667  T
Q  612 caaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
      ||          ||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  46860668 acaa----------ttctaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgttttgtggtcgaattgtt 46860748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 620 - 702
Target Start/End: Complemental strand, 15309883 - 15309801
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||| |||| |||||||||||||||||||| | ||||||||    
T  15309883 aagtcattccaagccaatttcaatcacaaaaacaagtaagtttttttaatcttattgcattgttgttttgtggtcgaattgtt 15309801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 620 - 702
Target Start/End: Complemental strand, 45257938 - 45257856
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| | ||||||||    
T  45257938 aagtcatttcaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgtt 45257856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 48272359 - 48272281
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| | ||||||||    
T  48272359 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattacattgttgttttgtggtcgaattgtt 48272281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 620 - 699
Target Start/End: Original strand, 28977723 - 28977802
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaatt 699  Q
    |||||||||||| |||||||||| |||| || |||||||||||||| ||||||||||||||||||||||||| |||||||    
T  28977723 aagtcattccaatccaatttcaatcacataaacaagtaagtttttttaatcctattgcattgttgttttgtggttgaatt 28977802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 620 - 702
Target Start/End: Complemental strand, 17840798 - 17840716
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||| ||| |||||| | ||||||||    
T  17840798 aagtcattccaatccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattcttgctttgtggtcgaattgtt 17840716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 33603366 - 33603448
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||| ||||||||| ||||||| ||||||| ||||| |||||||||||||||| ||||||||| ||||||||||    
T  33603366 aagtcattccaagtcaatttcaatcacaaaaacaagtaaatttttagaatcctattgcattgctgttttgtggttgaattgtt 33603448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 624 - 702
Target Start/End: Original strand, 48314832 - 48314910
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||||||||| |||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||    
T  48314832 cattccaagcaaatttcaatcacaaaaacaagtaagttttttgaatcatattgcattgttgttttgtggtcgaattgtt 48314910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 625 - 702
Target Start/End: Complemental strand, 48194534 - 48194457
Alignment:
Q  625 attccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||| |||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||||    
T  48194534 attccaagcgaatttcaatcacaaaaacaagtaagttttctgaatcctattgcattgttgttttgtggtcgaattgtt 48194457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 624 - 702
Target Start/End: Original strand, 21185794 - 21185872
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||| |||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||||| | ||||||||    
T  21185794 catttcaagccaatttcaatcacaaaaacaaataagttttttgaatcctattgcattgttattttgtggtcgaattgtt 21185872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 513 - 686
Target Start/End: Complemental strand, 34142674 - 34142500
Alignment:
Q  513 ggcagttaactgccgatgatc-tgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttca 611  Q
    |||||||||||||||| ||   ||||| ||||||| ||||||||||||||||||||||||| || | ||| |||||||  |  | | | | ||| ||| |    
T  34142674 ggcagttaactgccgaggaaaatgttataagaatataacagacataggagtttccaaaactccattgttgcgttttttattctccttgctgcgattttga 34142575  T
Q  612 caaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgtt 686  Q
      ||    ||| ||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  34142574 gcaatttaaagccattccaagccaatttcaatcacaaaaacaagtaagttttctgaatcctattgcattgttgtt 34142500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 40590453 - 40590375
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| | ||||| |||||||||||||| |||||||||||||||||||| || | ||||||||||    
T  40590453 cattccaagccaatttcaatcgcaaaaacaagtaagtttttttaatcctattgcattgttgttctgcggttgaattgtt 40590375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 629 - 702
Target Start/End: Complemental strand, 41623783 - 41623710
Alignment:
Q  629 caagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | | ||||||||    
T  41623783 caagtcaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgttttgcggtcgaattgtt 41623710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 630 - 701
Target Start/End: Complemental strand, 20566231 - 20566160
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||    
T  20566231 aagccaattttaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgt 20566160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 634 - 701
Target Start/End: Original strand, 42503996 - 42504063
Alignment:
Q  634 caatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    ||||||||| ||||||| |||||||||||||| |||||||||||||||||| |||||||| |||||||    
T  42503996 caatttcaatcacaaaaacaagtaagtttttttaatcctattgcattgttgctttgtgatcgaattgt 42504063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 624 - 691
Target Start/End: Complemental strand, 42684111 - 42684044
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    |||||||| |||||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||    
T  42684111 cattccaaaccaatttcaatcacaaaaataagtaagtttttttaatcctattgcattgttgttttgtg 42684044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 624 - 684
Target Start/End: Original strand, 15070524 - 15070584
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttg 684  Q
    |||| |||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  15070524 cattacaagccaatttcaatcacaaaaacaagtaagtttttttaatcctattgcattgttg 15070584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 624 - 702
Target Start/End: Original strand, 45361793 - 45361871
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||| || |||||||||| || |||| |||||||||||||| ||| ||||||||||||||||||| | ||||||||||    
T  45361793 cattctaaaccaatttcaatcataaaaacaagtaagtttttttaattctattgcattgttgttttgcggttgaattgtt 45361871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 629 - 691
Target Start/End: Original strand, 46597059 - 46597120
Alignment:
Q  629 caagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    |||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||    
T  46597059 caagccaatttcaatcacaaaaacaactaagtttttt-aatcctattgcattgttgttttgtg 46597120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 644 - 704
Target Start/End: Original strand, 3379573 - 3379633
Alignment:
Q  644 cacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    |||||||||||||||| | ||   |||||||||||||||||||||||||||||||||||||    
T  3379573 cacaaaatcaagtaaggtgttatcatcctattgcattgttgttttgtgattgaattgttag 3379633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 634 - 699
Target Start/End: Complemental strand, 10225758 - 10225693
Alignment:
Q  634 caatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaatt 699  Q
    ||||||||| |||||||  ||||||||||||| ||||||| || |||||||||||||| |||||||    
T  10225758 caatttcaatcacaaaaataagtaagtttttttaatcctactgaattgttgttttgtggttgaatt 10225693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 674
Target Start/End: Original strand, 9365854 - 9365898
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctat 674  Q
    |||||||||| || ||||||| |||||||||||||||||||||||    
T  9365854 aagccaattttaatcacaaaaacaagtaagttttttgaatcctat 9365898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 572
Target Start/End: Complemental strand, 10225859 - 10225799
Alignment:
Q  512 cggcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaact 572  Q
    |||||||||||| ||||  || ||||| |||||||||||  ||||||||||||||||||||    
T  10225859 cggcagttaactaccgaaaatttgttataagaatagaaccaacataggagtttccaaaact 10225799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 572
Target Start/End: Original strand, 28112840 - 28112900
Alignment:
Q  512 cggcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaact 572  Q
    ||||||||||||| |||  || ||||| ||||| | |||||||||||||||||||||||||    
T  28112840 cggcagttaactgtcgaaaatttgttataagaacataacagacataggagtttccaaaact 28112900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 514 - 588
Target Start/End: Complemental strand, 15309989 - 15309915
Alignment:
Q  514 gcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttt 588  Q
    |||||||| || ||||||||| ||| || |  ||||||||||||||||||||||||||| || | || |||||||    
T  15309989 gcagttaattgtcgatgatctattataaaatcagaacagacataggagtttccaaaactccattgttttgttttt 15309915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 534 - 572
Target Start/End: Original strand, 45361703 - 45361741
Alignment:
Q  534 tgttacaagaatagaacagacataggagtttccaaaact 572  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  45361703 tgttataagaacagaacagacataggagtttccaaaact 45361741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 3e-50; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 510 - 704
Target Start/End: Original strand, 36348684 - 36348879
Alignment:
Q  510 agcggcagttaactgccgatgat--ctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaat 607  Q
    ||||||||||||||| || || |  |||||| | ||| ||||||| ||||||||||||||||||| || | ||  ||||||||||||||||| |  ||||    
T  36348684 agcggcagttaactgtcgttgctttctgttatatgaacagaacag-cataggagtttccaaaactccattgttacgttttttgcttccatagatgtgaat 36348782  T
Q  608 ttcacaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| |||||||    
T  36348783 ttcacaaagcataaatcattccaagccaatttcaagcacaaaatcaagtaagttttttgaattctattgcattgctattttgtgattgatttgttag 36348879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 554 - 751
Target Start/End: Original strand, 41088233 - 41088430
Alignment:
Q  554 cataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatca 653  Q
    |||||||||| |||||||| || | ||  ||||||||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  41088233 cataggagttaccaaaactccattgttacgttttttgcttccataggtgcgaatttcacaaaccataagccattctaagccaatttcaagcacaaaatca 41088332  T
Q  654 agtaagttttttgaatcctattgcattgttgttttgtgattgaattgttagnnnnnnnnggttaaatttcgatta-agaggttttattgattttatgat 751  Q
    |||||||||||||||||||||||| ||| | |||||||||||| ||| |||        ||||||||| |||||| ||||| |||||||||||||||||    
T  41088333 agtaagttttttgaatcctattgcgttgctattttgtgattgatttgataggtttttttggttaaattgcgattatagagg-tttattgattttatgat 41088430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 583 - 751
Target Start/End: Original strand, 6791850 - 6792018
Alignment:
Q  583 gttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgt 682  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6791850 gttttttgctttcataggtgcgaatttcataaagcataagtcattctaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgc 6791949  T
Q  683 tgttttgtgattgaattgttagnnnnnnnnggttaaatttcgatta-agaggttttattgattttatgat 751  Q
    | |||||||||| | |||||||        ||||||||| |||||| ||||| |||||||||||||||||    
T  6791950 tattttgtgattaatttgttagttttttttggttaaattgcgattatagagg-tttattgattttatgat 6792018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 554 - 704
Target Start/End: Complemental strand, 1696598 - 1696448
Alignment:
Q  554 cataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatca 653  Q
    ||||||||||||||||||| |  | ||  ||||||||||||||||||| |||||||||| ||| ||||| ||||||||| ||||||||||||||||||||    
T  1696598 cataggagtttccaaaactcctttgttacgttttttgcttccataggtgcgaatttcacgaagaataagccattccaagtcaatttcaagcacaaaatca 1696499  T
Q  654 agtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    | |||||||||||||||||||||||||| | |||||||||||| |||||||    
T  1696498 attaagttttttgaatcctattgcattgctattttgtgattgatttgttag 1696448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 554 - 696
Target Start/End: Original strand, 7483857 - 7483999
Alignment:
Q  554 cataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatca 653  Q
    ||||||||||||||||||| || | ||  ||||||||||||||||||| ||||||||||||| |||||| |||| |||||||||||||||||||||||||    
T  7483857 cataggagtttccaaaactccattgttacgttttttgcttccataggtgcgaatttcacaaaccataagccatttcaagccaatttcaagcacaaaatca 7483956  T
Q  654 agtaagttttttgaatcctattgcattgttgttttgtgattga 696  Q
    |||||||||||| ||||||||||| ||| | ||||||||||||    
T  7483957 agtaagtttttttaatcctattgcgttgctattttgtgattga 7483999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 603 - 751
Target Start/End: Complemental strand, 40937247 - 40937099
Alignment:
Q  603 cgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||    
T  40937247 cgaatttcacaaagcataagtctatccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgctattttgtgattgatttgtt 40937148  T
Q  703 agnnnnnnnnggttaaatttcgatta-agaggttttattgattttatgat 751  Q
    ||        ||||||||| |||||| ||||| |||||||||||||||||    
T  40937147 agttttttttggttaaattgcgattatagagg-tttattgattttatgat 40937099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 516 - 700
Target Start/End: Complemental strand, 25499899 - 25499715
Alignment:
Q  516 agttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaa 615  Q
    |||||| ||||||  || ||||| ||||| ||||||||||||||||||||||||||| || | ||   ||||||| |  | ||||| ||| ||| |  ||    
T  25499899 agttaagtgccgaaaatttgttataagaacagaacagacataggagtttccaaaactccattgttacattttttgatctcctaggtgcgattttgagcaa 25499800  T
Q  616 gcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattg 700  Q
        |||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25499799 tttcaagtcattacaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgttttgtggttgaattg 25499715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 624 - 752
Target Start/End: Complemental strand, 18309961 - 18309833
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttagnnnnnnnnggttaaatttc 723  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |         ||||||||||    
T  18309961 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgttttgtggtcgaattgtttgtttttttt-gttaaatttc 18309863  T
Q  724 gatta-agaggttttattgattttatgata 752  Q
    ||||| | ||||||||||||||||||||||    
T  18309862 gattatataggttttattgattttatgata 18309833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 541089 - 541171
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||||    
T  541089 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttctgaatcctattgcattgttgttttgtggtcgaattgtt 541171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 619 - 704
Target Start/End: Complemental strand, 23190751 - 23190666
Alignment:
Q  619 taagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    |||| |||||||||||||||||||||||||||| ||||||||| ||   |||||||||||||||||||||||||||||||||||||    
T  23190751 taagccattccaagccaatttcaagcacaaaattaagtaagttgttatcatcctattgcattgttgttttgtgattgaattgttag 23190666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 624 - 702
Target Start/End: Original strand, 5965 - 6043
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| | ||||||||    
T  5965 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgtt 6043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 619 - 701
Target Start/End: Complemental strand, 11028913 - 11028831
Alignment:
Q  619 taagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||    
T  11028913 taagtcattacaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgt 11028831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 622 - 699
Target Start/End: Complemental strand, 20200065 - 20199988
Alignment:
Q  622 gtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaatt 699  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  20200065 gtcattccaagccaatttcaatcacaaaaacaagtaaattttttgaatcttattgcattgttgttttgtgatcgaatt 20199988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 624 - 704
Target Start/End: Complemental strand, 1973162 - 1973082
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||| |||||||    
T  1973162 cattccaagctaatttcaagcacaaaatcaagtaaattttttgaatcctatggcattgctattttgtgattgatttgttag 1973082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 624 - 701
Target Start/End: Complemental strand, 38855615 - 38855538
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||    
T  38855615 cattacaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgt 38855538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 620 - 690
Target Start/End: Complemental strand, 8539451 - 8539381
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgt 690  Q
    |||||||||||| |||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||||    
T  8539451 aagtcattccaaaccaattccaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgt 8539381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 34682422 - 34682504
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||||||||||||  |||||||| ||||| | |||||||||||||||||| ||||||||||||||||||||| | ||||||||    
T  34682422 aagtcattccaagttaatttcaatcacaagaacaagtaagttttttgaattctattgcattgttgttttgtggtcgaattgtt 34682504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 624 - 701
Target Start/End: Original strand, 8574890 - 8574967
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| |||||| | |||||||    
T  8574890 cattacaagccaatttcaatcacaaaaacaagtaagttttttgaatcttattgcattgttgctttgtggtcgaattgt 8574967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 625 - 702
Target Start/End: Complemental strand, 11348404 - 11348327
Alignment:
Q  625 attccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||||||||||||||||| ||||||| ||||||||| |||| |||||||||||||||||| |||||| | ||||||||    
T  11348404 attccaagccaatttcaatcacaaaaacaagtaagtgtttttaatcctattgcattgttgctttgtggtcgaattgtt 11348327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 630 - 702
Target Start/End: Original strand, 41201903 - 41201975
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||| |||||||  ||||||||||||| ||||||||||||||||||||||||| | ||||||||    
T  41201903 aagccaatttcaatcacaaaaataagtaagttttttaaatcctattgcattgttgttttgtggtcgaattgtt 41201975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 630 - 701
Target Start/End: Original strand, 19035413 - 19035484
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||    
T  19035413 aagccaattttaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgt 19035484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 624 - 699
Target Start/End: Original strand, 41798988 - 41799064
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaag-ttttttgaatcctattgcattgttgttttgtgattgaatt 699  Q
    ||||||||||||||||||| ||||||| |||||||| |||||| |||| |||||||||||||||||| | |||||||    
T  41798988 cattccaagccaatttcaatcacaaaaacaagtaagttttttttaatcttattgcattgttgttttgcggttgaatt 41799064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 624 - 691
Target Start/End: Complemental strand, 3603062 - 3602996
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||||||||| ||||||| |||||||||| |||||||| ||||||| ||||||||||||    
T  3603062 cattccaagccaatttcaatcacaaaaacaagtaagttctttgaatcatattgca-tgttgttttgtg 3602996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 624 - 680
Target Start/End: Original strand, 27660109 - 27660165
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcatt 680  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||| |||||||||    
T  27660109 cattacaagccaatttcaatcacaaaaacaagtaagttttttgaatcttattgcatt 27660165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 515 - 704
Target Start/End: Complemental strand, 7401881 - 7401693
Alignment:
Q  515 cagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaa 614  Q
    |||||||||| ||||  ||||||| ||||| ||||||||||||||| ||||||||||| || | ||| | ||||    | | || || ||| |||  | |    
T  7401881 cagttaactgtcgatactctgttataagaacagaacagacataggaatttccaaaactccattgttgcggttttgaaattcttatgtgcgattttgtcga 7401782  T
Q  615 agcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    |||  ||||||||| | |||||||  ||||||||||| |||||| |  ||||||||||||||||||| | |||| | |||||||||||||    
T  7401781 agctaaagtcattcaacgccaattctaagcacaaaattaagtaattgctttgaatcctattgcattggt-tttttttattgaattgttag 7401693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 647 - 704
Target Start/End: Original strand, 13129928 - 13129985
Alignment:
Q  647 aaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    ||||||||||||||| ||   |||||||||||||| ||||||||||||||||||||||    
T  13129928 aaaatcaagtaagttgttatcatcctattgcattgctgttttgtgattgaattgttag 13129985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 624 - 701
Target Start/End: Complemental strand, 30711064 - 30710987
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||| ||||||||||| ||  |||||| |||||||||||||||||| |||||| ||||||| |||||| | |||||||    
T  30711064 cattacaagccaattttaataacaaaaacaagtaagttttttgaattctattgtattgttgctttgtggtcgaattgt 30710987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 641 - 696
Target Start/End: Original strand, 4722512 - 4722568
Alignment:
Q  641 aagcacaaaatcaagtaag-ttttttgaatcctattgcattgttgttttgtgattga 696  Q
    ||||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||    
T  4722512 aagcacaaaatcaagtaagtttttttgaatcctattgcgttgctattttgtgattga 4722568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 460 - 528
Target Start/End: Complemental strand, 16462394 - 16462324
Alignment:
Q  460 tgtatacacatttgatacagctgaaaa--acatataaaagatgaaaagtccaagcggcagttaactgccga 528  Q
    |||||||||||||||||||||||||||  |||| ||||||| ||||||  |  ||||||||||||||||||    
T  16462394 tgtatacacatttgatacagctgaaaaacacatgtaaaagacgaaaagctccggcggcagttaactgccga 16462324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 702
Target Start/End: Complemental strand, 35566955 - 35566908
Alignment:
Q  655 gtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||||||||||||||||| ||| |||||||||||||| | ||||||||    
T  35566955 gtaagttttttgaatcctgttgtattgttgttttgtggtcgaattgtt 35566908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 534 - 572
Target Start/End: Original strand, 541006 - 541044
Alignment:
Q  534 tgttacaagaatagaacagacataggagtttccaaaact 572  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  541006 tgttataagaacagaacagacataggagtttccaaaact 541044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 451 - 489
Target Start/End: Original strand, 16461909 - 16461947
Alignment:
Q  451 gaaaattgctgtatacacatttgatacagctgaaaaaca 489  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  16461909 gaaaattgatgtatacacatttgatacaactgaaaaaca 16461947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 514 - 572
Target Start/End: Complemental strand, 18310061 - 18310003
Alignment:
Q  514 gcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaact 572  Q
    |||||||||||||||  ||  |||| ||||| | |||||||||||||||||||||||||    
T  18310061 gcagttaactgccgaaaattggttataagaacataacagacataggagtttccaaaact 18310003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 689
Target Start/End: Original strand, 35926559 - 35926592
Alignment:
Q  656 taagttttttgaatcctattgcattgttgttttg 689  Q
    |||||||||||||||||||||||||| |||||||    
T  35926559 taagttttttgaatcctattgcattgctgttttg 35926592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 532 - 704
Target Start/End: Original strand, 37311041 - 37311212
Alignment:
Q  532 tctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaa 631  Q
    ||||||| | ||| |||||| |||||||||||||||||| | || | ||  ||||||||||||||||||| |||||||||||||||||||| || |||||    
T  37311041 tctgttatatgaacagaaca-acataggagtttccaaaaatccattgttacgttttttgcttccataggtgcgaatttcacaaagcataagccaatccaa 37311139  T
Q  632 gccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| |||||||    
T  37311140 gccaatttcaagcacaaaatcaagtaagttttctgaatcctattgcattgctattttgtgattgatttgttag 37311212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 553 - 704
Target Start/End: Original strand, 23719444 - 23719595
Alignment:
Q  553 acataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatc 652  Q
    |||||||||||||||||||| || | ||  ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||     
T  23719444 acataggagtttccaaaactccattgttacgttttttgcttccgtaggtgcgaatttcacaaagtataagtcattccaagccaatttcaagcacaaaatt 23719543  T
Q  653 aagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    ||||||||||||||| ||||||||||||| | |||||||||||  |||||||    
T  23719544 aagtaagttttttgagtcctattgcattgctattttgtgattggtttgttag 23719595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 553 - 704
Target Start/End: Original strand, 24107116 - 24107267
Alignment:
Q  553 acataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatc 652  Q
    |||||||||||||||||||| || | ||  ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||     
T  24107116 acataggagtttccaaaactccattgttacgttttttgcttccgtaggtgcgaatttcacaaagtataagtcattccaagccaatttcaagcacaaaatt 24107215  T
Q  653 aagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    ||||||||||||||| ||||||||||||| | |||||||||||  |||||||    
T  24107216 aagtaagttttttgagtcctattgcattgctattttgtgattggtttgttag 24107267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 583 - 704
Target Start/End: Original strand, 17537283 - 17537404
Alignment:
Q  583 gttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgt 682  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||     
T  17537283 gttttttgcttccataggtgcgaatttcacagagcataagtcattccaagctaatttcaagcacaaaatcaagtaagttttgtgaatcctattgcattgc 17537382  T
Q  683 tgttttgtgattgaattgttag 704  Q
      |||||||||||| |||||||    
T  17537383 aattttgtgattgatttgttag 17537404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 553 - 696
Target Start/End: Complemental strand, 5422195 - 5422052
Alignment:
Q  553 acataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatc 652  Q
    |||||||||||| ||||||| || | ||  ||||||||||||||||||| ||||||||||||| |||||| |||| ||||||||||||||||||||||||    
T  5422195 acataggagttttcaaaactccattgttacgttttttgcttccataggtgcgaatttcacaaaccataagccatttcaagccaatttcaagcacaaaatc 5422096  T
Q  653 aagtaagttttttgaatcctattgcattgttgttttgtgattga 696  Q
    ||||||||||||||||| ||||||| ||| | ||||||||||||    
T  5422095 aagtaagttttttgaattctattgcgttgctattttgtgattga 5422052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 624 - 703
Target Start/End: Original strand, 34520135 - 34520214
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtta 703  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||    
T  34520135 cattccaagctaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgctattttgtgattgatttgtta 34520214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 620 - 702
Target Start/End: Complemental strand, 35493249 - 35493167
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| | ||||||||    
T  35493249 aagtcattccaagccaatttcaatcacaaaaacaagtaagtttttttaatcctattgcattgttgttttgtggtcgaattgtt 35493167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 624 - 704
Target Start/End: Original strand, 10358966 - 10359046
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |  ||||||||||| |||||||    
T  10358966 cattccaagccaatttcaaacacaaaatcaagtaagttttttgaatcctattgcattgctaatttgtgattgatttgttag 10359046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 620 - 691
Target Start/End: Original strand, 40675902 - 40675973
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  40675902 aagtcattccaagccaatttcaatcacaaaaacaagtcagttttttgaatcctattgcattgttgttttgtg 40675973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 620 - 702
Target Start/End: Complemental strand, 3943098 - 3943016
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||||||| | ||||||||||    
T  3943098 aagtcattccaagccaatttcaatcacaaaaacaagtaaatttttttaatcctattgcattgttgttttgcggttgaattgtt 3943016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 23786291 - 23786373
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||||||| | ||||||||    
T  23786291 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttctaaatcctattgcattgttgttttgtggtcgaattgtt 23786373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 624 - 702
Target Start/End: Original strand, 29090746 - 29090824
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  29090746 cattccaagccaatttcaaccacaaaaacaagtaagtttttttaatcctattgcattgttgttttgcggttgaattgtt 29090824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 43493188 - 43493110
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| | ||||||||    
T  43493188 cattccaagccaatttcaatcacaaaaacaagcaagttttttgaatcctattgcattgttgttttgtggtcgaattgtt 43493110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 624 - 688
Target Start/End: Complemental strand, 14181737 - 14181673
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgtttt 688  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  14181737 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgtttt 14181673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 23409406 - 23409330
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  23409406 cattccaagccaatttcaatcacaaa--caagtaagttttttgaatcctattgcattgttgttttgtggtcgaattgtt 23409330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 624 - 702
Target Start/End: Original strand, 2917842 - 2917920
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||||||||||| ||||||| | |||||||||||||| ||||||||||||||| | ||||||||    
T  2917842 cattccaagccaatttcaagcacaaaaacaagtaaatgttttgaatcctattacattgttgttttgtggtcgaattgtt 2917920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 619 - 701
Target Start/End: Original strand, 39798607 - 39798689
Alignment:
Q  619 taagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||| |||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||    
T  39798607 taagccattacaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgt 39798689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 620 - 699
Target Start/End: Complemental strand, 16583502 - 16583422
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagtt-ttttgaatcctattgcattgttgttttgtgattgaatt 699  Q
    ||||||||||||||||||||||| ||||||| |||||||||| |||| ||||||||||||||||||||||| | |||||||    
T  16583502 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttttaatcctattgcattgttgttttgcggttgaatt 16583422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 514 - 702
Target Start/End: Original strand, 19470017 - 19470204
Alignment:
Q  514 gcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcaca 613  Q
    |||||||||||||||  || ||||| ||||| |||||| |||||||| ||||||||||| || | ||   ||||||  |||| ||||| ||| ||| |      
T  19470017 gcagttaactgccgaaaatttgttataagaacagaacaaacataggaatttccaaaactccattgttacattttttttttcc-taggtgcgattttgagc 19470115  T
Q  614 aagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||    ||||||||||||||||||| ||   |||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||    
T  19470116 aatttcaagtcattccaagccaattccatttacaaaaacaagtaagttttttgaatcatattgcattgttgttttgtggtcgaattgtt 19470204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 620 - 691
Target Start/End: Original strand, 41497638 - 41497709
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||| ||||||||||||| |||||||  ||||||||||||||||||||||||||| |||||||||||    
T  41497638 aagtcattcaaagccaatttcaatcacaaaaataagtaagttttttgaatcctattgcatcgttgttttgtg 41497709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 624 - 701
Target Start/End: Complemental strand, 22003305 - 22003228
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| |||||| | |||||||    
T  22003305 cattacaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattcttgctttgtggtcgaattgt 22003228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 630 - 701
Target Start/End: Original strand, 3936038 - 3936109
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||    
T  3936038 aagccaattttaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgt 3936109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 512 - 691
Target Start/End: Complemental strand, 8268765 - 8268586
Alignment:
Q  512 cggcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttca 611  Q
    |||||||||||||||||  || ||||| ||||| | || ||||||| |||||||||||||| || | ||| |||||||  |  | ||| | ||| ||| |    
T  8268765 cggcagttaactgccgaaaatttgttataagaacaaaatagacatacgagtttccaaaactccattgttgcgttttttattctcctagatgcgattttga 8268666  T
Q  612 caaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
      ||    ||| ||||| ||||||||||||| ||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  8268665 gcaatttcaagccattctaagccaatttcaatcacaaaaacaagtaagttttttgaattctattgaattgttgttttgtg 8268586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 630 - 701
Target Start/End: Complemental strand, 17426263 - 17426192
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||    
T  17426263 aagccaattttaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgt 17426192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 34639217 - 34639139
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||||||||||||||||||  |||||| |||||||||||||| |||  |||| ||||||||||||| | ||||||||||    
T  34639217 cattccaagccaatttcaataacaaaaacaagtaagtttttttaattttattacattgttgttttgcggttgaattgtt 34639139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 624 - 701
Target Start/End: Complemental strand, 28476971 - 28476894
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||| |||||||||||||| ||||||| |||||||||||| ||||||||| ||||||| || |||||| | |||||||    
T  28476971 cattacaagccaatttcaatcacaaaaacaagtaagttttgtgaatcctactgcattggtgctttgtggtcgaattgt 28476894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 572
Target Start/End: Original strand, 40675799 - 40675855
Alignment:
Q  516 agttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaact 572  Q
    |||||||||||||  || ||||| ||| ||||||||||||| |||||||||||||||    
T  40675799 agttaactgccgaaaatttgttataagtatagaacagacattggagtttccaaaact 40675855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 674
Target Start/End: Complemental strand, 43984199 - 43984155
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctat 674  Q
    |||||||||| || ||||||| |||||||||||||||||||||||    
T  43984199 aagccaattttaatcacaaaaacaagtaagttttttgaatcctat 43984155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 534 - 572
Target Start/End: Complemental strand, 16583588 - 16583550
Alignment:
Q  534 tgttacaagaatagaacagacataggagtttccaaaact 572  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  16583588 tgttataagaacagaacagacataggagtttccaaaact 16583550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 1e-43; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 554 - 696
Target Start/End: Complemental strand, 26488440 - 26488298
Alignment:
Q  554 cataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatca 653  Q
    ||||||||||||||||||| || | ||  ||||||||||||||||||| |||| |||||||| |||||| |||||||||| |||||||||||||||||||    
T  26488440 cataggagtttccaaaactccattgttacgttttttgcttccataggtgcgaaattcacaaaccataagccattccaagctaatttcaagcacaaaatca 26488341  T
Q  654 agtaagttttttgaatcctattgcattgttgttttgtgattga 696  Q
    |||||||||||||||||||||||| ||| | ||||||||||||    
T  26488340 agtaagttttttgaatcctattgcgttgctattttgtgattga 26488298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 595 - 696
Target Start/End: Complemental strand, 26488281 - 26488180
Alignment:
Q  595 cataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgatt 694  Q
    ||||||| |||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||    
T  26488281 cataggtgcgaaattcacaaaccataagtcattccaagctaatttcaagcacaaaatcaagtaagttttttgaatcctattgcgttgctattttgtgatt 26488182  T
Q  695 ga 696  Q
    ||    
T  26488181 ga 26488180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 624 - 751
Target Start/End: Original strand, 19241147 - 19241274
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttagnnnnnnnnggttaaatttc 723  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||||||        ||||||||| |    
T  19241147 cattccaagccaatttcaaacacaaaatcaagtaagttttttgaatcatattgcattgctattttgtgattgatttgttagtttttttaggttaaattgc 19241246  T
Q  724 gatta-agaggttttattgattttatgat 751  Q
    ||||| ||||| |||||||||||||||||    
T  19241247 gattatagagg-tttattgattttatgat 19241274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 624 - 751
Target Start/End: Original strand, 19314331 - 19314458
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttagnnnnnnnnggttaaatttc 723  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||||||        ||||||||| |    
T  19314331 cattccaagccaatttcaaacacaaaatcaagtaagttttttgaatcatattgcattgctattttgtgattgatttgttagtttttttaggttaaattgc 19314430  T
Q  724 gatta-agaggttttattgattttatgat 751  Q
    ||||| ||||| |||||||||||||||||    
T  19314431 gattatagagg-tttattgattttatgat 19314458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 624 - 704
Target Start/End: Original strand, 38032380 - 38032460
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |||||||    
T  38032380 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgctattttgtgatttatttgttag 38032460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 38872845 - 38872767
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  38872845 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgttttgtggtcgaattgtt 38872767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 624 - 702
Target Start/End: Original strand, 18438793 - 18438872
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaat-cctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  18438793 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatccctattgcattgttgttttgtggttgaattgtt 18438872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 22550768 - 22550690
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||||    
T  22550768 cattccaagccaatttcaatcacaaaaacaagtaagttttctgaatcctattgcattgttgttttgtggtcgaattgtt 22550690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 540 - 699
Target Start/End: Complemental strand, 41276873 - 41276714
Alignment:
Q  540 aagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgct-tccataggtacgaatttcacaaagcataagtcattccaagccaatt 638  Q
    ||||| ||||||||||||||||||||||||||| || | ||  |||||||| | |||| |||||||| ||| |   |    ||| |||||||||||||||    
T  41276873 aagaacagaacagacataggagtttccaaaactccattgttacgttttttgatctcca-aggtacgattttgagctatttcaagccattccaagccaatt 41276775  T
Q  639 tcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaatt 699  Q
    |||| ||||||| |||||||||||||| ||||||||||||||||||||||| | |||||||    
T  41276774 tcaatcacaaaaacaagtaagtttttttaatcctattgcattgttgttttgcggttgaatt 41276714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 620 - 691
Target Start/End: Original strand, 41855529 - 41855600
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    |||||||||||| |||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||    
T  41855529 aagtcattccaaaccaatttcaatcacaaaaacaagtaagttttttgaatcccattgcattgttgttttgtg 41855600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 620 - 702
Target Start/End: Complemental strand, 26455583 - 26455501
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||||||||  |||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  26455583 aagtcattctcagccaatttcaatcacaaaaacaagtaagtttttttaatcctattgcattgttgttttgcggttgaattgtt 26455501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 624 - 702
Target Start/End: Original strand, 41016583 - 41016661
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||| | ||||||||    
T  41016583 cattccaagccaatttcaatcacaaaaacaattaagttttttgaatcctattgcattgttgctttgtggtcgaattgtt 41016661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 624 - 701
Target Start/End: Complemental strand, 45066265 - 45066188
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||    
T  45066265 cattacaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgt 45066188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 619 - 674
Target Start/End: Original strand, 31170580 - 31170635
Alignment:
Q  619 taagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctat 674  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31170580 taagtcattccaagccaatttcaagcacaaaatcaagtaagtgttttgaatcctat 31170635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 620 - 691
Target Start/End: Complemental strand, 40704067 - 40703997
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  40704067 aagtcattccaagccaatttcaatcacaaaaacaagtaagt-ttttgaatcatattgcattgttgttttgtg 40703997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 620 - 702
Target Start/End: Complemental strand, 28168510 - 28168428
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||  ||||||| ||||||||||| || | ||||||||    
T  28168510 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgagccctattgaattgttgttttttggtcgaattgtt 28168428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 624 - 689
Target Start/End: Complemental strand, 44052129 - 44052064
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttg 689  Q
    |||| |||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||    
T  44052129 catttcaagccaatttcaatcacaaaaacaagtaagtttttttaatcctattgcattgttgttttg 44052064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 630 - 701
Target Start/End: Original strand, 483991 - 484062
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||    
T  483991 aagccaattttaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgt 484062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 620 - 691
Target Start/End: Complemental strand, 42605142 - 42605071
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||||||||||||| |||| ||  |||||||||||||||||| ||||||| ||||||||||||    
T  42605142 aagtcattccaagccaatttcaatcacagaaataagtaagttttttgaatcatattgcactgttgttttgtg 42605071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 624 - 701
Target Start/End: Original strand, 15031053 - 15031129
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||| |||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||||| | |||||||    
T  15031053 cattacaagccaatttcaatcacaaaaacaagtaag-tttttgaatcctattgcattgttgctttgtggtcgaattgt 15031129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 630 - 704
Target Start/End: Complemental strand, 14120473 - 14120400
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    |||||||||  ||||| |||||||||||||| ||||||||||||||| |||| |||||||||||| |||||||||    
T  14120473 aagccaattctaagca-aaaatcaagtaagtgttttgaatcctattgtattgctgttttgtgattaaattgttag 14120400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 714 - 757
Target Start/End: Complemental strand, 14120382 - 14120338
Alignment:
Q  714 gttaaatttcgatta-agaggttttattgattttatgatagttta 757  Q
    |||||||||| |||| |||||||||||||||||||||||||||||    
T  14120382 gttaaatttcaattatagaggttttattgattttatgatagttta 14120338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 595 - 657
Target Start/End: Complemental strand, 14120601 - 14120539
Alignment:
Q  595 cataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatcaagta 657  Q
    ||||||| ||| |||||| |||| ||||||||||||||||||||  |||  ||||||||||||    
T  14120601 cataggtgcgattttcaccaagcttaagtcattccaagccaattctaagtgcaaaatcaagta 14120539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 4e-34; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 554 - 696
Target Start/End: Complemental strand, 12398658 - 12398516
Alignment:
Q  554 cataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatca 653  Q
    ||||||||||| ||||||| || | ||  |||| |||||||||||||| |||| || ||||| |||||| ||||| ||||||||||||||||||||||||    
T  12398658 cataggagttttcaaaactccattgttacgtttattgcttccataggtgcgaaatttacaaaccataagccattcaaagccaatttcaagcacaaaatca 12398559  T
Q  654 agtaagttttttgaatcctattgcattgttgttttgtgattga 696  Q
    |||||||||||||||||||||||  ||| | ||||||||||||    
T  12398558 agtaagttttttgaatcctattgtgttgctattttgtgattga 12398516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 625 - 752
Target Start/End: Original strand, 32026132 - 32026260
Alignment:
Q  625 attccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttagnnnnnnnnggttaaatttcg 724  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| | |||||||| |         |||||||||||    
T  32026132 attccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgaattgttgttttgtggtcgaattgtttgtatttttttgttaaatttcg 32026231  T
Q  725 atta-agaggttttattgattttatgata 752  Q
    |||| | ||||||||||||||||||||||    
T  32026232 attatataggttttattgattttatgata 32026260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 620 - 691
Target Start/End: Original strand, 35019742 - 35019813
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35019742 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgttttgtg 35019813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 607 - 688
Target Start/End: Original strand, 30763469 - 30763550
Alignment:
Q  607 tttcacaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgtttt 688  Q
    |||||| |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  30763469 tttcaccaagcttaagtcattccaagccaattacaagcacaaaatcaagtaagtgttttgaatcctattgcattgttttttt 30763550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 620 - 702
Target Start/End: Complemental strand, 13404540 - 13404458
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||||||||||| ||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  13404540 aagtcattccaatccaatttaaatcacaaaaacaagtaagttttttgaatcctattgcattgttgttttgtggtcgaattgtt 13404458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 510 - 681
Target Start/End: Complemental strand, 17126991 - 17126819
Alignment:
Q  510 agcggcagttaactgccgatgatctgtt-acaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatt 608  Q
    ||||| ||||||||| || ||||||||| | ||||| ||||||||||||||||||||||||||| ||   ||| |||||| | ||   ||||| ||| ||    
T  17126991 agcggtagttaactgtcgttgatctgtttataagaacagaacagacataggagtttccaaaactccatcgttgcgtttttggatttattaggtgcgattt 17126892  T
Q  609 tcacaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattg 681  Q
    |||| |||||||||||||| ||||||||||  ||||||| |||| | ||||| |||| |||| ||||||||||    
T  17126891 tcaccaagcataagtcatttcaagccaattctaagcacataatccaataagtgtttttaatcttattgcattg 17126819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 624 - 702
Target Start/End: Original strand, 13616410 - 13616488
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| | | ||||||||    
T  13616410 cattccaagccaatttcaatcacaaaaacaagtaagttttttaaatcctattgcattgttgttttgcggtcgaattgtt 13616488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 620 - 699
Target Start/End: Complemental strand, 29076231 - 29076152
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaatt 699  Q
    |||||||||||| |||||||||| ||||||| |||||||||||||| ||| ||||||||||||||||||| | |||||||    
T  29076231 aagtcattccaaaccaatttcaatcacaaaaacaagtaagtttttttaattctattgcattgttgttttgcggttgaatt 29076152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 620 - 699
Target Start/End: Complemental strand, 29109764 - 29109685
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaatt 699  Q
    |||||||||||| |||||||||| ||||||| |||||||||||||| ||| ||||||||||||||||||| | |||||||    
T  29109764 aagtcattccaaaccaatttcaatcacaaaaacaagtaagtttttttaattctattgcattgttgttttgcggttgaatt 29109685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 620 - 699
Target Start/End: Complemental strand, 29111204 - 29111125
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaatt 699  Q
    |||||||||||| |||||||||| ||||||| |||||||||||||| ||| ||||||||||||||||||| | |||||||    
T  29111204 aagtcattccaaaccaatttcaatcacaaaaacaagtaagtttttttaattctattgcattgttgttttgcggttgaatt 29111125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 619 - 702
Target Start/End: Original strand, 32691349 - 32691432
Alignment:
Q  619 taagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||| ||||||||||| || ||||||| ||||||||||||||||||||||||| ||||||| |||||| | ||||||||    
T  32691349 taagtcattacaagccaattttaatcacaaaaacaagtaagttttttgaatcctattgtattgttgctttgtggtcgaattgtt 32691432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 29083416 - 29083338
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    |||| |||||||||||||| ||||||| |||||||||||||| ||| ||||||||||||||||||| | ||||||||||    
T  29083416 catttcaagccaatttcaatcacaaaaacaagtaagtttttttaattctattgcattgttgttttgcggttgaattgtt 29083338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 630 - 701
Target Start/End: Complemental strand, 27641616 - 27641545
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||    
T  27641616 aagccaattttaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgt 27641545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 624 - 699
Target Start/End: Complemental strand, 29068169 - 29068094
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaatt 699  Q
    |||| |||||||||||||| ||||||| |||||||||||||| ||| ||||||||||||||||||| | |||||||    
T  29068169 catttcaagccaatttcaatcacaaaaacaagtaagtttttttaattctattgcattgttgttttgcggttgaatt 29068094  T

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Target: chr6; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 14124622 - 14124544
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||| ||||||| |||||| || || |||||| |||||||||||||||||||  ||||||||||    
T  14124622 cattccaagccaatttcaatcacaaaaacaagtacgtgttctgaatcttattgcattgttgttttgttgttgaattgtt 14124544  T

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Target: chr6; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 624 - 701
Target Start/End: Original strand, 34801673 - 34801751
Alignment:
Q  624 cattccaagccaatttcaagcaca-aaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    ||||||||||||||||||| |||| |||  |||||||||||||||||||||||||||| |||||||||| | |||||||    
T  34801673 cattccaagccaatttcaatcacacaaaaaaagtaagttttttgaatcctattgcattcttgttttgtggtcgaattgt 34801751  T

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Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 636 - 704
Target Start/End: Original strand, 20240874 - 20240942
Alignment:
Q  636 atttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    |||||||||||||||||||||||||| ||   ||| ||||||||  |||||||||||||||||||||||    
T  20240874 atttcaagcacaaaatcaagtaagttgttatcatcttattgcatcattgttttgtgattgaattgttag 20240942  T

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Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 636 - 704
Target Start/End: Original strand, 22134858 - 22134926
Alignment:
Q  636 atttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    |||||||||||||||||||||||||| ||   ||| ||||||||  |||||||||||||||||||||||    
T  22134858 atttcaagcacaaaatcaagtaagttgttatcatcttattgcatcattgttttgtgattgaattgttag 22134926  T

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Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 636 - 704
Target Start/End: Original strand, 22142211 - 22142279
Alignment:
Q  636 atttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgttag 704  Q
    |||||||||||||||||||||||||| ||   ||| ||||||||  |||||||||||||||||||||||    
T  22142211 atttcaagcacaaaatcaagtaagttgttatcatcttattgcatcattgttttgtgattgaattgttag 22142279  T

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Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 674
Target Start/End: Complemental strand, 6206958 - 6206914
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctat 674  Q
    |||||||||| || ||||||| |||||||||||||||||||||||    
T  6206958 aagccaattttaatcacaaaaacaagtaagttttttgaatcctat 6206914  T

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Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 674
Target Start/End: Complemental strand, 11693925 - 11693881
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctat 674  Q
    |||||||||| || ||||||| |||||||||||||||||||||||    
T  11693925 aagccaattttaatcacaaaaacaagtaagttttttgaatcctat 11693881  T

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Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 572
Target Start/End: Complemental strand, 29076335 - 29076279
Alignment:
Q  516 agttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaact 572  Q
    ||||||||||||| ||  ||||| ||||| | |||||||||||||||||||||||||    
T  29076335 agttaactgccgaggaaatgttataagaacaaaacagacataggagtttccaaaact 29076279  T

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Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 572
Target Start/End: Complemental strand, 29109868 - 29109812
Alignment:
Q  516 agttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaact 572  Q
    ||||||||||||| ||  ||||| ||||| | |||||||||||||||||||||||||    
T  29109868 agttaactgccgaggaaatgttataagaacaaaacagacataggagtttccaaaact 29109812  T

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Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 572
Target Start/End: Complemental strand, 29111308 - 29111252
Alignment:
Q  516 agttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaact 572  Q
    ||||||||||||| ||  ||||| ||||| | |||||||||||||||||||||||||    
T  29111308 agttaactgccgaggaaatgttataagaacaaaacagacataggagtttccaaaact 29111252  T

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Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 572
Target Start/End: Complemental strand, 33202047 - 33201987
Alignment:
Q  512 cggcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaact 572  Q
    |||||||||| || ||||||| ||||| ||||| | ||||||||||||| |||||||||||    
T  33202047 cggcagttaattgtcgatgatatgttataagaacataacagacataggaatttccaaaact 33201987  T

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Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 589
Target Start/End: Original strand, 13616320 - 13616375
Alignment:
Q  534 tgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgtttttt 589  Q
    ||||| ||||| ||||||||||||||||||||||||||| || | ||| |||||||    
T  13616320 tgttataagaacagaacagacataggagtttccaaaactccattgttgcgtttttt 13616375  T

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Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 572
Target Start/End: Original strand, 5972057 - 5972118
Alignment:
Q  512 cggcagttaactgccgatgatctgttacaagaatagaacag-acataggagtttccaaaact 572  Q
    ||||| ||||||||||||| ||||||| ||||| ||||| | |||||||| |||||||||||    
T  5972057 cggcaattaactgccgatgctctgttataagaacagaacggcacataggaatttccaaaact 5972118  T

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Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 670
Target Start/End: Complemental strand, 33201987 - 33201910
Alignment:
Q  593 tccataggtacgaatttcacaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatc 670  Q
    |||||| || ||| |||||| |||  |||| |||||||||| |||| ||| |||||||||||||||||  ||||||||    
T  33201987 tccataagtgcgattttcaccaagattaagccattccaagctaattacaaacacaaaatcaagtaagtgctttgaatc 33201910  T

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Target: scaffold0192 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 624 - 702
Target Start/End: Original strand, 16561 - 16639
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| | ||||||||    
T  16561 cattccaagtcaatttcaagcacaaaaacaagtaaattttttgaatcctattgcattgttgttttgtggtcgaattgtt 16639  T

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Target: scaffold0176 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 513 - 686
Target Start/End: Complemental strand, 3599 - 3425
Alignment:
Q  513 ggcagttaactgccgatgatc-tgttacaagaatagaacagacataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttca 611  Q
    |||||||||||||||| ||   ||||| ||||||| ||||||||||||||||||||||||| || | ||| |||||||  |  | | | | ||| ||| |    
T  3599 ggcagttaactgccgaggaaaatgttataagaatataacagacataggagtttccaaaactccattgttgcgttttttattctccttgctgcgattttga 3500  T
Q  612 caaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgtt 686  Q
      ||    ||| ||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  3499 gcaatttaaagccattccaagccaatttcaatcacaaaaacaagtaagttttctgaatcctattgcattgttgtt 3425  T

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Target: scaffold0176; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 620 - 702
Target Start/End: Complemental strand, 561 - 483
Alignment:
Q  620 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgtt 702  Q
    ||||||||||||||||||||||| ||||||| |||||    |||||||||| ||||||||||||| |||||| | ||||||||    
T  561 aagtcattccaagccaatttcaatcacaaaaacaagt----tttttgaatcttattgcattgttgctttgtggtcgaattgtt 483  T

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Target: scaffold0025 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 512 - 660
Target Start/End: Complemental strand, 154437 - 154288
Alignment:
Q  512 cggcagttaactgccgatgatctgttacaagaatagaacag-acataggagtttccaaaacttcaatattgtgttttttgcttccataggtacgaatttc 610  Q
    ||||||||||| || |||| ||||||| ||||| ||||||| |||||||| ||||||||||| || | |||   ||||   |||||||||||||| ||||    
T  154437 cggcagttaaccgctgatgctctgttataagaacagaacagcacataggaatttccaaaactccattgttgcagttttgagttccataggtacgattttc 154338  T
Q  611 acaaagcataagtcattccaagccaatttcaagcacaaaatcaagtaagt 660  Q
     | |||| |||||||||| | ||||||| ||| |||||||||||||||||    
T  154337 tccaagcttaagtcattcaatgccaattacaaacacaaaatcaagtaagt 154288  T

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Target: scaffold0014 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 630 - 701
Target Start/End: Original strand, 84755 - 84826
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||    
T  84755 aagccaattttaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtggtcgaattgt 84826  T

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Target: scaffold0199 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 630 - 691
Target Start/End: Original strand, 10853 - 10914
Alignment:
Q  630 aagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    ||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||||    
T  10853 aagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgcattgttgctttgtg 10914  T

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Target: scaffold0494 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 624 - 691
Target Start/End: Original strand, 5500 - 5567
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtg 691  Q
    |||| |||||||||||||| || |||| |||||||||||||| |||||||||||||||||| ||||||    
T  5500 cattacaagccaatttcaatcataaaaacaagtaagtttttttaatcctattgcattgttgctttgtg 5567  T

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Target: scaffold0094 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 624 - 701
Target Start/End: Complemental strand, 108 - 31
Alignment:
Q  624 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttgttttgtgattgaattgt 701  Q
    |||| |||| |||||| || ||||||| ||||||||||||||||||||||||| ||| ||| |||||| | |||||||    
T  108 cattacaagtcaattttaatcacaaaaacaagtaagttttttgaatcctattgtattattgctttgtggtcgaattgt 31  T

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Target: scaffold0258 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 512 - 572
Target Start/End: Complemental strand, 10323 - 10263
Alignment:
Q  512 cggcagttaactgccgatgatctgttacaagaatagaacagacataggagtttccaaaact 572  Q
    ||||| ||||||||||||  ||||||| ||||||| ||||||||||||| |||||||||||    
T  10323 cggcacttaactgccgattctctgttataagaatataacagacataggaatttccaaaact 10263  T

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Target: scaffold0618 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 575
Target Start/End: Original strand, 3965 - 4005
Alignment:
Q  535 gttacaagaatagaacagacataggagtttccaaaacttca 575  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  3965 gttataagaacagaacagacataggagtttccaaaacttca 4005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 624 - 691
Target Start/End: Original strand, 4044 - 4114
Alignment:
Q  624 cattccaagccaatttcaagca-caaaatcaagt-aagttttttg-aatcctattgcattgttgttttgtg 691  Q
    ||||||||||||||||||| || ||||| ||||| |||||||||  |||| ||||||||||||||||||||    
T  4044 cattccaagccaatttcaatcaacaaaaacaagttaagttttttttaatcttattgcattgttgttttgtg 4114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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