View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243-INSERTION-12 (Length: 700)
Name: NF0243-INSERTION-12
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243-INSERTION-12 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 111 - 471
Target Start/End: Original strand, 33489417 - 33489777
Alignment:
| Q |
111 |
ataagttagttaaatctttcccgactctattagggtatatgaagattgtgaagacactgagtctagtcaaagctgaatgaaactgaacaattaggcaatc |
210 |
Q |
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| T |
33489417 |
ataagttagttaaatcttttccgactctattagggtatatgaagattgtgaagacaatgagtctagtcaaagctcaatgaaactgaacaattaggcaatc |
33489516 |
T |
|
| Q |
211 |
aatttgtgctccatatatttaaattaccactgag-aaaaatggcttttagaacgaagccacgttttaaggaagttgcgcacatgtggattatatcaacgg |
309 |
Q |
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| T |
33489517 |
aatttgtgctccatat--ttaaattaccactgagcaaaaatggcttttagaacgaagccatgttataaggaagttgcgcacatgtggattatatcaacgg |
33489614 |
T |
|
| Q |
310 |
attatatcgcgaaacagaagactgcaagccaaatgtggggtgccacataccgctcatagtcggaaactcacgcgctacacgataaatagcataacaaggc |
409 |
Q |
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| T |
33489615 |
attatatcgcgaaacagaagactgcaaaccaaatgtggggtgccacatacccctcatagccggaaactcacgcgctacacgataaatagcgtaacaaggc |
33489714 |
T |
|
| Q |
410 |
taatttctattgttcacgtcgtttttgtcaacaagactagtgc-tttgcctatgtatattaaa |
471 |
Q |
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| T |
33489715 |
taatttctattgttcacgtcgtttttgtcaacaagactagtgcttttgcctatgtatattaaa |
33489777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 33489344 - 33489425
Alignment:
| Q |
7 |
aaaaataaattacatgttagccgaaatcggaaaatagacgatttagagtcaagtgagtttctctcaatcgataataagttag |
88 |
Q |
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| T |
33489344 |
aaaaataaattacatgttagtcgaaatcggaaaacagaagatttagagtcaagtgagtttctttcaatcgataataagttag |
33489425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 27049715 - 27049673
Alignment:
| Q |
188 |
tgaaactgaacaattaggcaatcaatttgtgctccatatattt |
230 |
Q |
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|||||||| |||||||||||||||| |||| |||||||||||| |
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| T |
27049715 |
tgaaactggacaattaggcaatcaacttgttctccatatattt |
27049673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 512
Target Start/End: Complemental strand, 33736449 - 33736407
Alignment:
| Q |
470 |
aactagtacattgtattcgacacacaatcaatcaaacaggtta |
512 |
Q |
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| T |
33736449 |
aacttgtacattttattcgacacacaatcaatcaaacaagtta |
33736407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 453 - 505
Target Start/End: Original strand, 33908673 - 33908725
Alignment:
| Q |
453 |
tttgcctatgtatattaaactagtacattgtattcgacacacaatcaatcaaa |
505 |
Q |
| |
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||||||||| |||| | |||| ||||||| ||||| ||||||||||||||||| |
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| T |
33908673 |
tttgcctatatatactgaacttgtacattttattcaacacacaatcaatcaaa |
33908725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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