View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243-INSERTION-13 (Length: 722)
Name: NF0243-INSERTION-13
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243-INSERTION-13 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 703
Target Start/End: Complemental strand, 8003008 - 8002295
Alignment:
| Q |
8 |
atattttctctctttctatacccctttctaggtacttctcttatgagaagcttcttatagttctacctctatatttctattgcactttcctccatggtta |
107 |
Q |
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| T |
8003008 |
atattttctctctttctataccc-tttctaggtacttttcttatgagaagcttcttatagttctacctctatatttctattgcactttcctccatggtta |
8002910 |
T |
|
| Q |
108 |
tacc--------------taggaggatactttcagcttaattccatcaataagatatagtattgtttctccaataannnnnnnnnnnnaaggtttcccct |
193 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| |||| ||| |
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| T |
8002909 |
tacccaggaggttatacctaggaggatactttcagcttaattccatcaataagata--gtattgtttctccgataatttttttttt--aagatttctcct |
8002814 |
T |
|
| Q |
194 |
ataaatactattagtcattacacaagactatcagttggcaaggataatacataatatacacaaggtttagagttctaaccccgaccacnnnnnnnnnnnn |
293 |
Q |
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| T |
8002813 |
ataaatactattagtcattacacaacactatcagttggtaaagataatacataatatatacaaagtttagagttctaaccccgaccacaaaaaaaaaaa- |
8002715 |
T |
|
| Q |
294 |
nnnngactagtaataataattaggaaatctagttttggttaagtcattatgacaagtacaagtgattgagtctagttttagttaagtcattacgacaaga |
393 |
Q |
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| T |
8002714 |
----gactaataataataattaggaaatctagttttggttaagtcattatgacaagtacaagtgattgagtctagttttagttaagtcattacgacaaga |
8002619 |
T |
|
| Q |
394 |
tcaagtgattgagtccaagtggataatgagcttctcctaaaagaatcgttcagaataacgacgattgacttccgatataaataattcttgaccataatta |
493 |
Q |
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| T |
8002618 |
tcaagtgattgagttcaagtggataatgagcttctcctaaaagaatcgttcaaaataaccaagattgacttccgatataaataattcttgaccataatta |
8002519 |
T |
|
| Q |
494 |
-----------------acttcatattactaggaccattttctctaggaaacggagggttaccagcannnnnnnnaaagacnnnnnnntcattgattttg |
576 |
Q |
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| T |
8002518 |
acttacctctcgatcgaacttcatattactaggtccattttctctaagaaacggagggttaccagcattttttttaaagacaaaaaaatcattgattttg |
8002419 |
T |
|
| Q |
577 |
gttatgnnnnnnnnattgagttaatttgataatttaaataagagtaaattactctcccctcatggttaaaaacatacacaactctcccttcaacgatgtt |
676 |
Q |
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| T |
8002418 |
gttatg--ttttttattgagttaatttgataatttaaataagagtaaattactct-ccctcatggttaaaaacatacacaactctccctttaaagatgtt |
8002322 |
T |
|
| Q |
677 |
gaattatatattttgatccgactttat |
703 |
Q |
| |
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|||||| |||||||||||||||||||| |
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| T |
8002321 |
gaattacatattttgatccgactttat |
8002295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 645 - 704
Target Start/End: Original strand, 8001245 - 8001304
Alignment:
| Q |
645 |
aaaacatacacaactctcccttcaacgatgttgaattatatattttgatccgactttata |
704 |
Q |
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| T |
8001245 |
aaaacatatacaaccctcccttcaaagatgcaaaattatatattttgatccgaatttata |
8001304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 634 - 695
Target Start/End: Original strand, 39664015 - 39664076
Alignment:
| Q |
634 |
cctcatggttaaaaacatacacaactctcccttcaacgatgttgaattatatattttgatcc |
695 |
Q |
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| T |
39664015 |
cctcatgtttcaaaacatacacaaccctcccttcaaaggtgctgaattatatattttgatcc |
39664076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 636 - 694
Target Start/End: Complemental strand, 14537672 - 14537614
Alignment:
| Q |
636 |
tcatggttaaaaacatacacaactctcccttcaacgatgttgaattatatattttgatc |
694 |
Q |
| |
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| T |
14537672 |
tcatgtttcaaaacatacacaactcttcctttaaagatgctaaattatatattttgatc |
14537614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 630 - 704
Target Start/End: Complemental strand, 39664497 - 39664423
Alignment:
| Q |
630 |
ctcccctcatggttaaaaacatacacaactctcccttcaacgatgttgaattatatattttgatccgactttata |
704 |
Q |
| |
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|||||||||| || |||||||||||||| ||||||||| |||| ||||||||||||| |||||| |||||| |
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| T |
39664497 |
ctcccctcatatttcaaaacatacacaaccttcccttcaaagatgcaaaattatatattttcatccgaatttata |
39664423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 645 - 692
Target Start/End: Complemental strand, 31812129 - 31812082
Alignment:
| Q |
645 |
aaaacatacacaactctcccttcaacgatgttgaattatatattttga |
692 |
Q |
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||||||||||||| ||||| ||||| ||||||||||| |||||||||| |
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| T |
31812129 |
aaaacatacacaattctcctttcaatgatgttgaattttatattttga |
31812082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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