View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0243-INSERTION-2 (Length: 140)

Name: NF0243-INSERTION-2
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0243-INSERTION-2
NF0243-INSERTION-2
[»] chr1 (9 HSPs)
chr1 (8-140)||(8421906-8422038)
chr1 (14-132)||(9537129-9537247)
chr1 (18-132)||(43407105-43407219)
chr1 (40-132)||(338484-338576)
chr1 (55-132)||(37666916-37666993)
chr1 (51-132)||(16075129-16075210)
chr1 (23-132)||(33007389-33007498)
chr1 (45-129)||(25921869-25921953)
chr1 (40-72)||(6836314-6836346)
[»] chr2 (6 HSPs)
chr2 (13-140)||(40729157-40729284)
chr2 (20-132)||(18292432-18292544)
chr2 (20-140)||(34397549-34397667)
chr2 (40-132)||(40447857-40447949)
chr2 (52-132)||(41339991-41340071)
chr2 (65-132)||(28266849-28266917)
[»] chr5 (7 HSPs)
chr5 (17-140)||(40691228-40691351)
chr5 (40-132)||(38001359-38001448)
chr5 (20-132)||(30910155-30910266)
chr5 (55-132)||(537211-537288)
chr5 (20-72)||(6309116-6309168)
chr5 (82-132)||(6309186-6309236)
chr5 (23-72)||(6309083-6309132)
[»] chr4 (8 HSPs)
chr4 (13-132)||(55162503-55162622)
chr4 (20-132)||(40459307-40459419)
chr4 (40-132)||(28968977-28969074)
chr4 (44-131)||(13652914-13653002)
chr4 (44-131)||(13661039-13661127)
chr4 (20-72)||(69712-69764)
chr4 (40-72)||(69696-69728)
chr4 (81-129)||(2761801-2761849)
[»] chr7 (9 HSPs)
chr7 (14-130)||(49170042-49170159)
chr7 (18-132)||(10288529-10288643)
chr7 (20-129)||(12911434-12911543)
chr7 (47-132)||(40106193-40106278)
chr7 (13-132)||(12196434-12196554)
chr7 (55-132)||(15873713-15873790)
chr7 (55-132)||(11036084-11036162)
chr7 (81-132)||(48653535-48653586)
chr7 (55-120)||(22078066-22078132)
[»] scaffold1838 (1 HSPs)
scaffold1838 (13-129)||(535-651)
[»] chr3 (6 HSPs)
chr3 (18-132)||(7336432-7336546)
chr3 (55-132)||(5004458-5004535)
chr3 (55-132)||(46404339-46404416)
chr3 (68-132)||(16975724-16975788)
chr3 (59-132)||(43277784-43277853)
chr3 (40-72)||(17542462-17542494)
[»] chr6 (3 HSPs)
chr6 (55-132)||(10751298-10751375)
chr6 (68-132)||(23260352-23260416)
chr6 (55-132)||(34636578-34636655)
[»] chr8 (8 HSPs)
chr8 (20-120)||(44436478-44436578)
chr8 (40-132)||(41958160-41958253)
chr8 (20-72)||(22635789-22635841)
chr8 (20-60)||(3189208-3189248)
chr8 (20-72)||(44436442-44436494)
chr8 (81-120)||(3189140-3189179)
chr8 (81-120)||(22635733-22635772)
chr8 (66-120)||(40841227-40841282)
[»] scaffold0013 (1 HSPs)
scaffold0013 (20-70)||(242844-242894)


Alignment Details
Target: chr1 (Bit Score: 113; Significance: 1e-57; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 8421906 - 8422038
Alignment:
Q  8 aatacctgtaattgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatg 107  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  8421906 aatacctgtaattaccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcatggcatatg 8422005  T
Q  108 catctatgtggtgtcttagtggcggaaactgca 140  Q
    ||||||||||||| |||||||||||||| ||||    
T  8422006 catctatgtggtgccttagtggcggaaattgca 8422038  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 9537247 - 9537129
Alignment:
Q  14 tgtaattgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatcta 113  Q
    |||||||| ||||| ||| |||| | |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| | ||||||||| |     
T  9537247 tgtaattgtcttagcggcgggttataattatattctgtgtggtgccttagtggcgggttttagtctacattttcatgatcatgcatggcatatgcatttg 9537148  T
Q  114 tgtggtgtcttagtggcgg 132  Q
    ||||||| |||||||||||    
T  9537147 tgtggtgccttagtggcgg 9537129  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 43407219 - 43407105
Alignment:
Q  18 attgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtg 117  Q
    ||||||| |||||  |||| | |||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||||| ||||    
T  43407219 attgcctaagtggtgggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtg 43407120  T
Q  118 gtgtcttagtggcgg 132  Q
    ||| |||||||||||    
T  43407119 gtgccttagtggcgg 43407105  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 338484 - 338576
Alignment:
Q  40 attatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    |||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||||| ||||||| |||||||||||    
T  338484 attatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgg 338576  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 37666993 - 37666916
Alignment:
Q  55 gtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    ||||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||||||    
T  37666993 gtgccttagtggcggattttagtctgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgg 37666916  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 16075129 - 16075210
Alignment:
Q  51 tgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    |||||||||| || |||||| |||||  |||||||||||||||||||| | || |||||||| |||||||||||||||||||    
T  16075129 tgtggtgcctgagtggcgggatttaggatgcattttcatgatcatgcatggcaaatgcatctgtgtggtgtcttagtggcgg 16075210  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 33007498 - 33007389
Alignment:
Q  23 cttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtc 122  Q
    |||||| || |||| | |||||||||| ||||||| ||| | || || ||||||||| ||||||||| ||||||||   ||||||||||| |||||||      
T  33007498 cttagttgcgggttataattatattctatgtggtgtcttcgtggtggattttagtctacattttcataatcatgcatagcatatgcatctgtgtggtgct 33007399  T
Q  123 ttagtggcgg 132  Q
    ||||||||||    
T  33007398 ttagtggcgg 33007389  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 25921869 - 25921953
Alignment:
Q  45 attctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtgg 129  Q
    ||||| |||||||||| || | |||| ||| || | ||||||||||||||| || ||||||||||||| ||||||| ||||||||    
T  25921869 attctttgtggtgcctaagtgacgggattttgtttacattttcatgatcatacatgacatatgcatctgtgtggtgccttagtgg 25921953  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 6836314 - 6836346
Alignment:
Q  40 attatattctgtgtggtgccttagcggcgggtt 72  Q
    |||||||||||||||||||||||| ||||||||    
T  6836314 attatattctgtgtggtgccttagtggcgggtt 6836346  T

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Target: chr2 (Bit Score: 88; Significance: 1e-42; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 40729284 - 40729157
Alignment:
Q  13 ctgtaattgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatct 112  Q
    ||||||||| |||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||    
T  40729284 ctgtaattgtcttagtggcaggttataattatattctgtgtggtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatct 40729185  T
Q  113 atgtggtgtcttagtggcggaaactgca 140  Q
     ||||||| |||||||| ||||| ||||    
T  40729184 gtgtggtgccttagtggtggaaattgca 40729157  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 18292544 - 18292432
Alignment:
Q  20 tgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggt 119  Q
    |||||||||||| |||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  18292544 tgccttagtggcgggttataattatattttgtgtggtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggt 18292445  T
Q  120 gtcttagtggcgg 132  Q
    | |||||||||||    
T  18292444 gccttagtggcgg 18292432  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 34397667 - 34397549
Alignment:
Q  20 tgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggt 119  Q
    |||||||||||| |||| | |||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||| |  |||||||||| ||||||    
T  34397667 tgccttagtggcgggttataattatattctgtgtggtgccttagtggcgggttttagtctgca--ttcatgatcatgcatggtatatgcatctgtgtggt 34397570  T
Q  120 gtcttagtggcggaaactgca 140  Q
    | ||||||||| |||| ||||    
T  34397569 gccttagtggcagaaattgca 34397549  T

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Target: chr2; HSP #4
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 40447857 - 40447949
Alignment:
Q  40 attatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    |||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||||| ||||||| |||||||||||    
T  40447857 attatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgg 40447949  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 41340071 - 41339991
Alignment:
Q  52 gtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    |||||||||||| ||||||||||||||| ||||||||||| |||||| | |||||||| || ||||||| |||||||||||    
T  41340071 gtggtgccttagtggcgggttttagtcttcattttcatgaccatgcatggcatatgcacctgtgtggtgccttagtggcgg 41339991  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 28266917 - 28266849
Alignment:
Q  65 ggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtgg-tgtcttagtggcgg 132  Q
    |||||| |||||||| |||||| ||||||||||| | ||||||||||||||||| ||||||||||||||    
T  28266917 ggcgggatttagtcttcattttaatgatcatgcatggcatatgcatctatgtggatgtcttagtggcgg 28266849  T

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Target: chr5 (Bit Score: 84; Significance: 3e-40; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 40691228 - 40691351
Alignment:
Q  17 aattgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgt 116  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| | ||||||||||| |||    
T  40691228 aattgccttagtggcgggttgtgattatattatgtgtggtgccttagtgacgggttttagtctgcattttcatgatcatgcaaggcatatgcatctgtgt 40691327  T
Q  117 ggtgtcttagtggcggaaactgca 140  Q
    |||| |||| ||||||||| ||||    
T  40691328 ggtgccttattggcggaaattgca 40691351  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 38001359 - 38001448
Alignment:
Q  40 attatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||  ||| ||||||||||||| ||||||||| |||||||||    
T  38001359 attatattctgtgtggtgtcttagtggcgggttttaatctgcattttcatgatc--gcatgacatatgcatctgtgtggtgtc-tagtggcgg 38001448  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 30910155 - 30910266
Alignment:
Q  20 tgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggt 119  Q
    ||||| |||||| |||| | |||||||| ||||||||||||||| ||||| ||| ||||||||||| |||||||||||| | ||||||||||| ||||||    
T  30910155 tgcctaagtggcgggttataattatattatgtgtggtgccttagtggcggattt-agtctgcatttccatgatcatgcatggcatatgcatctgtgtggt 30910253  T
Q  120 gtcttagtggcgg 132  Q
     ||||||| ||||    
T  30910254 ctcttagtagcgg 30910266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 537211 - 537288
Alignment:
Q  55 gtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    ||||||||| ||||||||||||| |||||||||||| || |||| | ||||||||||| ||||||| |||||||||||    
T  537211 gtgccttagtggcgggttttagtgtgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgg 537288  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 6309116 - 6309168
Alignment:
Q  20 tgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggtt 72  Q
    |||||||||||| ||||   |||||||||||||||||||||||| ||||||||    
T  6309116 tgccttagtggcgggttactattatattctgtgtggtgccttagtggcgggtt 6309168  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 6309186 - 6309236
Alignment:
Q  82 attttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    ||||||||||||||||| | ||||||||||| ||||||||||  |||||||    
T  6309186 attttcatgatcatgcatggcatatgcatctgtgtggtgtctgtgtggcgg 6309236  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 6309083 - 6309132
Alignment:
Q  23 cttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggtt 72  Q
    ||||||||| ||||   |||||||||||||||||||||||| ||||||||    
T  6309083 cttagtggcgggttactattatattctgtgtggtgccttagtggcgggtt 6309132  T

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Target: chr4 (Bit Score: 80; Significance: 6e-38; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 55162503 - 55162622
Alignment:
Q  13 ctgtaattgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatct 112  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||| | | ||| |||||||||||||||||||||||||||| | |||||||||||    
T  55162503 ctgtaattgcattagtggcgggttgtgattatattctgtgtggtgccttggtgacggattttagtctgcattttcatgatcatgcatggcatatgcatct 55162602  T
Q  113 atgtggtgtcttagtggcgg 132  Q
     ||||||| |||||||||||    
T  55162603 gtgtggtgccttagtggcgg 55162622  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 40459307 - 40459419
Alignment:
Q  20 tgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggt 119  Q
    ||||| |||||| |||| | |||||||||| ||| ||||||||| ||||||||||||  |||||||||||||||||||| | ||||||||||| ||||||    
T  40459307 tgcctaagtggcgggttataattatattctatgttgtgccttagtggcgggttttaggttgcattttcatgatcatgcatgtcatatgcatctgtgtggt 40459406  T
Q  120 gtcttagtggcgg 132  Q
    | |||||||||||    
T  40459407 gccttagtggcgg 40459419  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 28969074 - 28968977
Alignment:
Q  40 attatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcat-----gcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    |||||||||||||||||||||||| ||  ||||||| |||||||||||||||||||     ||| | ||||||||||| ||||||| |||||||||||    
T  28969074 attatattctgtgtggtgccttagtggtaggttttaatctgcattttcatgatcatgcatggcatggcatatgcatctgtgtggtgccttagtggcgg 28968977  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 13652914 - 13653002
Alignment:
Q  44 tattctgtgtggtgccttagcggcgggttttagtct-gcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcg 131  Q
    |||||| |||||| ||| || ||||||||||||||| ||||||||||||||||||| |  |||||||| | ||||||| ||||||||||    
T  13652914 tattctttgtggtacctaagtggcgggttttagtcttgcattttcatgatcatgcatggtatatgcatttgtgtggtgccttagtggcg 13653002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 13661039 - 13661127
Alignment:
Q  44 tattctgtgtggtgccttagcggcgggttttagtct-gcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcg 131  Q
    |||||| |||||| ||| || ||||||||||||||| ||||||||||||||||||| |  |||||||| | ||||||| ||||||||||    
T  13661039 tattctttgtggtacctaagtggcgggttttagtcttgcattttcatgatcatgcatggtatatgcatttgtgtggtgccttagtggcg 13661127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 69712 - 69764
Alignment:
Q  20 tgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggtt 72  Q
    |||||||||||| ||||  ||||||||||||||||||||||||| ||||||||    
T  69712 tgccttagtggcgggttacgattatattctgtgtggtgccttagtggcgggtt 69764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 69696 - 69728
Alignment:
Q  40 attatattctgtgtggtgccttagcggcgggtt 72  Q
    |||||||||||||||||||||||| ||||||||    
T  69696 attatattctgtgtggtgccttagtggcgggtt 69728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 2761849 - 2761801
Alignment:
Q  81 cattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtgg 129  Q
    |||||||||||||||||| | ||||||||| | ||||||| ||||||||    
T  2761849 cattttcatgatcatgcatggcatatgcatttgtgtggtgccttagtgg 2761801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 2e-34; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 49170159 - 49170042
Alignment:
Q  14 tgtaattgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatcta 113  Q
    |||||||||||||||||| |||||| |||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| | |||||||||||     
T  49170159 tgtaattgccttagtggcgggttgtaattatattctgtgtggtgtcttagtggcggattttagtctgcattttcatgatcatgcatggcatatgcatctg 49170060  T
Q  114 tgtgg-tgtcttagtggc 130  Q
    ||||| || |||||||||    
T  49170059 tgtggatgccttagtggc 49170042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 10288643 - 10288529
Alignment:
Q  18 attgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtg 117  Q
    ||||||| |||||  |||| | |||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||||| ||||    
T  10288643 attgcctaagtggtgggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtg 10288544  T
Q  118 gtgtcttagtggcgg 132  Q
    ||| |||||||||||    
T  10288543 gtgccttagtggcgg 10288529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 12911543 - 12911434
Alignment:
Q  20 tgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggt 119  Q
    ||||| |||||| |||| | ||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| | | ||||||||||| ||||||    
T  12911543 tgcctaagtggcgggttataattatattctgtgtggtaccttagtggcgggttttagtctgcattttcataatcatgtatggcatatgcatctgtgtggt 12911444  T
Q  120 gtcttagtgg 129  Q
    | ||||||||    
T  12911443 gccttagtgg 12911434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 40106193 - 40106278
Alignment:
Q  47 tctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||||||    
T  40106193 tctgtgtggtgccttagtggcggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgg 40106278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 12196554 - 12196434
Alignment:
Q  13 ctgtaattgccttagtggcaggttgtgattatat-tctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatc 111  Q
    ||||||||||||||||||  ||||   ||||||| ||||||||||||||||| |||||  |||||||||||||||||||||||| || | ||||| ||||    
T  12196554 ctgtaattgccttagtggtgggttaatattatatatctgtgtggtgccttagtggcggactttagtctgcattttcatgatcatacatggcatattcatc 12196455  T
Q  112 tatgtggtgtcttagtggcgg 132  Q
    | ||||||| |||||||||||    
T  12196454 tgtgtggtgccttagtggcgg 12196434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 15873790 - 15873713
Alignment:
Q  55 gtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    ||||||||| ||||||||||||| |||||||||||| || |||| | ||||||||||| ||||||| |||||||||||    
T  15873790 gtgccttagtggcgggttttagtgtgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgg 15873713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 11036162 - 11036084
Alignment:
Q  55 gtgccttagcggcgggttttagtctgcattttcatgatcatgcacga-catatgcatctatgtggtgtcttagtggcgg 132  Q
    |||||| || |||||| |||||||| ||||||||||||||||||  | ||||||||||| ||||||| |||||||||||    
T  11036162 gtgcctaagtggcgggatttagtcttcattttcatgatcatgcattagcatatgcatctctgtggtgccttagtggcgg 11036084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 48653586 - 48653535
Alignment:
Q  81 cattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    ||||||||||||||||||  |||||||||||| ||||||||||  |||||||    
T  48653586 cattttcatgatcatgcataacatatgcatctgtgtggtgtctgtgtggcgg 48653535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 22078066 - 22078132
Alignment:
Q  55 gtgccttagcggcgggttttagtctgcattttcatgatcatgcacga-catatgcatctatgtggtg 120  Q
    |||||| || |||||| |||||||| ||||||||||||||||||  | ||||||||||| |||||||    
T  22078066 gtgcctaagtggcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtg 22078132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 69; Significance: 2e-31; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 535 - 651
Alignment:
Q  13 ctgtaattgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatct 112  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | | ||||||||| |    
T  535 ctgtaattgccttagtggcgggttataattatattctgtgtggtgccttagtggcgagttttagtctgcattttcatgatcatgaaaggcatatgcattt 634  T
Q  113 atgtggtgtcttagtgg 129  Q
     |||| || ||||||||    
T  635 gtgtgatgccttagtgg 651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 4e-30; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 7336546 - 7336432
Alignment:
Q  18 attgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtg 117  Q
    ||||||| |||||  |||| | |||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||||| ||||    
T  7336546 attgcctaagtggtgggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtg 7336447  T
Q  118 gtgtcttagtggcgg 132  Q
    ||| |||||||||||    
T  7336446 gtgccttagtggcgg 7336432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 5004535 - 5004458
Alignment:
Q  55 gtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    ||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||||||    
T  5004535 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgg 5004458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 46404416 - 46404339
Alignment:
Q  55 gtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    ||||||||| ||||||||||||| |||||||||||| |  |||| | ||||||||||| ||||||| |||||||||||    
T  46404416 gtgccttagtggcgggttttagtgtgcattttcatgtttgtgcatggcatatgcatctgtgtggtgccttagtggcgg 46404339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 16975724 - 16975788
Alignment:
Q  68 gggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    |||||||||||||||||||||||||||| || | ||||||||||| ||||||| | |||||||||    
T  16975724 gggttttagtctgcattttcatgatcatccatggcatatgcatctgtgtggtgccatagtggcgg 16975788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 43277853 - 43277784
Alignment:
Q  59 cttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    ||||| |||||||||||||    |||||||||||||| || ||||||||||||| ||||||| |||||||||||    
T  43277853 cttagtggcgggttttagt----attttcatgatcatacatgacatatgcatctgtgtggtgccttagtggcgg 43277784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 17542494 - 17542462
Alignment:
Q  40 attatattctgtgtggtgccttagcggcgggtt 72  Q
    |||||||||||||||||||||||| ||||||||    
T  17542494 attatattctgtgtggtgccttagtggcgggtt 17542462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 9e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 10751375 - 10751298
Alignment:
Q  55 gtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    ||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||||||    
T  10751375 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgg 10751298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 23260416 - 23260352
Alignment:
Q  68 gggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    ||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||||||    
T  23260416 gggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgg 23260352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 34636578 - 34636655
Alignment:
Q  55 gtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    ||||||||| ||||||||||||| |||||||||||| || |||| | ||||||||||| ||||||| |||||||||||    
T  34636578 gtgccttagtggcgggttttagtgtgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgg 34636655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 8e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 44436478 - 44436578
Alignment:
Q  20 tgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggt 119  Q
    ||||||||| || |||| | |||||||||||||||||||||||| || ||||||||||||  ||||||||||||||||  | ||||||||||| ||||||    
T  44436478 tgccttagttgcgggttataattatattctgtgtggtgccttagtggtgggttttagtctctattttcatgatcatgcttggcatatgcatctgtgtggt 44436577  T
Q  120 g 120  Q
    |    
T  44436578 g 44436578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 41958253 - 41958160
Alignment:
Q  40 attatattctgtgtggt-gccttagcggcgggttttagtctgcattttcatgatcatgcacgacatatgcatctatgtggtgtcttagtggcgg 132  Q
    ||||| |||| |||||| ||||||| |  ||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||||||    
T  41958253 attattttctttgtggttgccttagtgatgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgg 41958160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 22635841 - 22635789
Alignment:
Q  20 tgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggtt 72  Q
    ||||||||||||||||||  ||||||||||||||||||||| || ||||||||    
T  22635841 tgccttagtggcaggttgcaattatattctgtgtggtgcctcagtggcgggtt 22635789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 3189248 - 3189208
Alignment:
Q  20 tgccttagtggcaggttgtgattatattctgtgtggtgcct 60  Q
    |||||||||||| |||||  |||||||||||||||||||||    
T  3189248 tgccttagtggcgggttgcaattatattctgtgtggtgcct 3189208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 44436442 - 44436494
Alignment:
Q  20 tgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcgggtt 72  Q
    ||||||||| || |||| | ||||||||||||||||||||||||  |||||||    
T  44436442 tgccttagttgcgggttataattatattctgtgtggtgccttagttgcgggtt 44436494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 3189179 - 3189140
Alignment:
Q  81 cattttcatgatcatgcacgacatatgcatctatgtggtg 120  Q
    |||||||||||||||||| ||||||||||| | |||||||    
T  3189179 cattttcatgatcatgcatgacatatgcatttgtgtggtg 3189140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 22635772 - 22635733
Alignment:
Q  81 cattttcatgatcatgcacgacatatgcatctatgtggtg 120  Q
    |||||||||||||||||| | ||||||||||| |||||||    
T  22635772 cattttcatgatcatgcatggcatatgcatctgtgtggtg 22635733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 40841282 - 40841227
Alignment:
Q  66 gcgggttttagtctgcattttcatgatcatgcacga-catatgcatctatgtggtg 120  Q
    ||||| |||||||| ||||||||||||||||||  | ||||||||||| |||||||    
T  40841282 gcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtg 40841227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 242894 - 242844
Alignment:
Q  20 tgccttagtggcaggttgtgattatattctgtgtggtgccttagcggcggg 70  Q
    |||||||||||||||||   |||||||||||||||||||||| | ||||||    
T  242894 tgccttagtggcaggttactattatattctgtgtggtgccttcgtggcggg 242844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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