View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243-INSERTION-5 (Length: 477)
Name: NF0243-INSERTION-5
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243-INSERTION-5 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 161 - 477
Target Start/End: Original strand, 4480143 - 4480464
Alignment:
| Q |
161 |
tctcccttgctccgtacacctcctttgcgggaagggatgtatcgcgaataattttgccaaatgcagcatttaagcttgatttgttgttgggtctaagtgg |
260 |
Q |
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|||||||||||||||||||| |||| || |||||||||| ||| || |||||| |||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
4480143 |
tctcccttgctccgtacacccccttcacgagaagggatgtgtcgtgagtaatttcgccaaatgcaacatttaagcttgatttgttgttggacctaagtga |
4480242 |
T |
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| Q |
261 |
tttaagcccaaatctttaaccggttcagaacaagtgctattcataaatattagtaatttgcaagaaactaa-----nnnnnnnnnnnnnnnnaagaaaaa |
355 |
Q |
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| T |
4480243 |
tttaagctcagatctttaaccggttcagaacaagtgctattcataaatattagtaatttgcaagaaactaatttgttttttttttctttttgaagaaaaa |
4480342 |
T |
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| Q |
356 |
ctaattagttgtggataccaaaaatatccttaatcaaataaattaaatcaccggatttcctaggtcaatccataaataccctaattttatgaatagttat |
455 |
Q |
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| T |
4480343 |
ctaattagttgtggataccaaatatatccttaatcaaataaattaaatcaccagatttcctaggtcaatccatgaataccctaattttatgaatagttat |
4480442 |
T |
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| Q |
456 |
agtagcataatgctttacatat |
477 |
Q |
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| T |
4480443 |
agcagcataatgctttacatat |
4480464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 4478975 - 4479116
Alignment:
| Q |
7 |
atgttctttcacatcttgatgtgaaattaggaggccaccatgcccatataggccaacataatatttcgttacattttacaatgacaatttgtgtactatc |
106 |
Q |
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| T |
4478975 |
atgttctttcacatcttgatgtgaaattaggaggccatcatgcccatataggccaaaataatatttcgttacattttacaatgacaatttgtgtactatc |
4479074 |
T |
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| Q |
107 |
aaatttcatatacaaacaaagttaagggttgataggaaacaa |
148 |
Q |
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| T |
4479075 |
aaatttcatatacaaacaaagttaagggttgatgggaaacaa |
4479116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 187 - 292
Target Start/End: Original strand, 87627 - 87732
Alignment:
| Q |
187 |
gcgggaagggatgtatcgcgaataattttgccaaatgcagcatttaagcttgatttgttgttgggtctaagtggtttaagcccaaatctttaaccggttc |
286 |
Q |
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| T |
87627 |
gcggggaggggtgtgtcgcgagtaattctgtgaaatgcagcatttgggcttgatttgttgttgggcctaagtggcttaagcccagttctttgaccggtcc |
87726 |
T |
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| Q |
287 |
agaaca |
292 |
Q |
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|||||| |
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| T |
87727 |
agaaca |
87732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 190 - 292
Target Start/End: Complemental strand, 5632594 - 5632492
Alignment:
| Q |
190 |
ggaagggatgtatcgcgaataattttgccaaatgcagcatttaagcttgatttgttgttgggtctaagtggtttaagcccaaatctttaaccggttcaga |
289 |
Q |
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||||||| ||| | |||| ||| | ||||||||||||||||| | |||||||||||||||| ||||||| ||||||||| |||||| |||||| |||| |
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| T |
5632594 |
ggaaggggtgtgttgcgagtaaatctgccaaatgcagcatttgggtttgatttgttgttgggcctaagtgacttaagcccagatctttgaccggtccaga |
5632495 |
T |
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| Q |
290 |
aca |
292 |
Q |
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||| |
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| T |
5632494 |
aca |
5632492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 293
Target Start/End: Original strand, 3024849 - 3024941
Alignment:
| Q |
202 |
tcgcgaataattttgccaaatgcagcatttaagcttgatttgttgttgggtct-aagtggtttaagcccaaatctttaaccggttcagaacaa |
293 |
Q |
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| T |
3024849 |
tcgcgagtaattctgtcaaatgcaacatttgggcttgatttgttgttgggcctaaagtgacttaagcccagatctttgaccggtcaagaacaa |
3024941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 21694254 - 21694300
Alignment:
| Q |
213 |
tttgccaaatgcagcatttaagcttgatttgttgttgggtctaagtg |
259 |
Q |
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| T |
21694254 |
tttgccaaatgcagcatttgagcttgatttgttactgggcctaagtg |
21694300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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