View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243-INSERTION-6 (Length: 816)
Name: NF0243-INSERTION-6
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243-INSERTION-6 |
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Alignment Details
Target: chr1 (Bit Score: 572; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 64 - 800
Target Start/End: Original strand, 9435997 - 9436737
Alignment:
| Q |
64 |
gcacgtctattctattacttgtttgt-ttattatatttgcactttgttcatcgtttttgctcttcttgcgatactcagaatta---agagattgatccat |
159 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
9435997 |
gcacgtctattctattacttgttcgtgttattatatttgcactttgttcatcctttttgctcttcttgcgatactcataattaccaagagattgatccat |
9436096 |
T |
|
| Q |
160 |
ccattagtgttttataaggcatattttactatgctatgttgtatgtcttaacaaggtttgaactttatgtccttctattttgaaaattatgggattagga |
259 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9436097 |
ccattagtgttttatatggcatattttactatgctatgttgtatgtcttaacaaggtttgaactttatgtccttctattttgaaaattatgggactagga |
9436196 |
T |
|
| Q |
260 |
caaaacccaacggaaaaacatcgtgcaagaccaacaactccatcgttaaaaaccttactcggaaaagatgagagcagtgcaagaaatcaacatcaaccaa |
359 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||| |
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| T |
9436197 |
aaaaacccaacgaaaaaacattgtgcaagaccaacaactccatcgttaaaaaccttactaggaaaagatgagggcagtgcaagaaatctacatcaaccaa |
9436296 |
T |
|
| Q |
360 |
agataaatccttaaggaaatcaatactacataagnnnnnnnggaagagaaggacacatctatctagtaaagcaaggtgaaacactcttttcatctgacga |
459 |
Q |
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| T |
9436297 |
agataaatccttaaggaaaccaatactacagaag-aaaaaaggaagagaaggacacatctatctagtaaagcaaggtgaaacacgcttttcatctgacga |
9436395 |
T |
|
| Q |
460 |
agaaaatgctagcttgcctcttgtaaaaggaagcattcctctggtggaaaacnnnnnnnnnctc--agacctttcaaagaacccataatttggtcttaaa |
557 |
Q |
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| T |
9436396 |
agaaaatgctagcttgcctcttgtaaaaggaagcattcctctggtggaaaac-aaaaaaaactcatagacctttcaaagaacccataatttggtcttaaa |
9436494 |
T |
|
| Q |
558 |
taagtgaacacgcaaagatttgtgaagtttcaaagatgcatcttcgtctgttatttaaacatctttacctaaattaatacggcttcatctgcttgacaca |
657 |
Q |
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|
| T |
9436495 |
taagtgaacacgaaaagatttgtgaagtttcaaagatgcatcttcttctgttatttaaacttctttacctaaattaatatggcttcatctgcttgacaca |
9436594 |
T |
|
| Q |
658 |
aacaacgtatcatctggtcatgagtcactcccttacaattcctatacatcatttacttacaaaccccttaatcggtataacgtggtatcgatgttgtgaa |
757 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9436595 |
aacaacgtatcatctggtcatgagtcactcccttacaattcctatacatcatttacttacaaaccccttaatcggtataacgtggtttcgatgttgtgaa |
9436694 |
T |
|
| Q |
758 |
gtataagttcagtgacaagaggatcactgtgaaattagtgcat |
800 |
Q |
| |
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| T |
9436695 |
gtataagttcagtaacaagaggatcactgtgaaattagtgcat |
9436737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 318
Target Start/End: Original strand, 9389333 - 9389652
Alignment:
| Q |
7 |
agtggtatcagggtaagtttgtacagtcggacagtgtgtcatgtatccattatgct---tgcacgtctattctattacttgtttgt-ttattatatttgc |
102 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||||| |||| ||||||||| ||||| |||||| ||||||||||||| |
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| T |
9389333 |
agtggtatcaaggtaagtttgtacagtcggccagtgtgacatgtgtccattatgctgcttgcatgtctattctgttactggtttgtgttattatatttgc |
9389432 |
T |
|
| Q |
103 |
actttgttcatcgtttttgctcttcttgcgatactcagaatta---agagattgatccatccattagtgttttataaggcatattttactatgctatgtt |
199 |
Q |
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| T |
9389433 |
actttgttcatccctcttggtcttcttgcgatactcagaattaccaagagattgatccatccattagagttttatatggcatattttactatgctatgtt |
9389532 |
T |
|
| Q |
200 |
gtatgtcttaacaaggtttgaactttatgtccttctattttgaaaattatgggattaggacaaaacccaac-ggaaaaacatcgtgcaagaccaacaact |
298 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
9389533 |
gtatgtcttaacaaggtttgaactttatgtccttctattttgaaaattatgggactaggacaaaacccaacaaaaaaaacattgtgcaagaccaacaact |
9389632 |
T |
|
| Q |
299 |
ccatcgttaaaaaccttact |
318 |
Q |
| |
|
|| || |||| || |||||| |
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| T |
9389633 |
ccctcattaataatcttact |
9389652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 437 - 595
Target Start/End: Original strand, 9389774 - 9389933
Alignment:
| Q |
437 |
gaaacactcttttcatctgacgaagaaaatgctagcttgcctcttgt-aaaaggaagcattcctctggtggaaaacnnnnnnnnnctcagacctttcaaa |
535 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||| || | |||| ||||||| |
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| T |
9389774 |
gaaacactcttttcatccgacgaagaaaatgctagcttgcctctagtaaaaaggaagcattcctctggtggaacacaaaaaagctcatagacttttcaaa |
9389873 |
T |
|
| Q |
536 |
gaacccataatttggtcttaaataagtgaacacgcaaagatttgtgaagtttcaaagatg |
595 |
Q |
| |
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|||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||| |
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| T |
9389874 |
gaacccataatttggtcttaaaaaagtgaacactcgaagatttgtgaagtttcaaagatg |
9389933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 338 - 385
Target Start/End: Original strand, 9389705 - 9389752
Alignment:
| Q |
338 |
gcaagaaatcaacatcaaccaaagataaatccttaaggaaatcaatac |
385 |
Q |
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| T |
9389705 |
gcaagaaatcaacatcaaccaaagataaatccttaagcaaaccaatac |
9389752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 705
Target Start/End: Original strand, 9389950 - 9390006
Alignment:
| Q |
649 |
cttgacacaaacaacgtatcatctggtcatgagtcactcccttacaattcctataca |
705 |
Q |
| |
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||||||||||| |||| |||||||| |||||| |||||| |||||||||| |||||| |
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| T |
9389950 |
cttgacacaaaaaacgcatcatctgatcatgaatcactctcttacaattcatataca |
9390006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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