View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243-INSERTION-7 (Length: 790)
Name: NF0243-INSERTION-7
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243-INSERTION-7 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 8 - 533
Target Start/End: Complemental strand, 43747015 - 43746513
Alignment:
| Q |
8 |
gtggagggtctaaaaattgtaatggaaagtttgcattttgatttcttcttcttcttcctattcctacaaagctcattatgctccgaggaaggcttgtcat |
107 |
Q |
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| T |
43747015 |
gtggagggtctaaaaattgtaatggaaagtttgcattttgatttcttcttcttcttcctattcctacaaagctcattatgctccgaggaaggcttgtcat |
43746916 |
T |
|
| Q |
108 |
tcggcgaactatcctatgatctcttacggttgatgacatgaaatatttctaccaagaagcaattatttcaatttaggtgctctaatgtaacataattatg |
207 |
Q |
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| T |
43746915 |
tcggcgaactatcctatgatctcttacggttgatgacatgaaatatttctaccaagaaacaattatttcaatttaggtgctctaatgtat---------- |
43746826 |
T |
|
| Q |
208 |
atgtgaagatttagagtctcaaaaaagtctgtgactatttccgtnnnnnnnnntcaagggaatcgagtttatcatttaatgtttttcttcgataatttat |
307 |
Q |
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| T |
43746825 |
------agatttagagtctcaaaaaagtctgtgacta------------aaaatcaagggaatcgagtttatcatttaatgtttttctttgataatttat |
43746744 |
T |
|
| Q |
308 |
ttctatggaacatatgcaagaggattgtagaagtattttga-----aatgtcacttcttttgtcttatctttctttgaggaagtataaagaagattcttt |
402 |
Q |
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| T |
43746743 |
ttctatggaacatatgcaagaggattgtagaagtattttgatttgaaatgtcacttcttttgtcttatctttctttgagaaagtataaagaagattcttt |
43746644 |
T |
|
| Q |
403 |
gcttaaggctaaatcttccgttcatttttcaagttctacttcaacactagatattactttactttatgtgtaagaccattagggagtactcgtgttacat |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43746643 |
gcttaaggctaaatcttccgttcatttttcaagttctacttcaacactagatattactttactttatgtgtaagaccattagggagttctcgtgttacat |
43746544 |
T |
|
| Q |
503 |
agatgctgggatatgttgaatatggcatcaa |
533 |
Q |
| |
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| T |
43746543 |
agattctgggatatgctgaatatggcatcaa |
43746513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 576 - 790
Target Start/End: Complemental strand, 43746451 - 43746237
Alignment:
| Q |
576 |
tacgaaatttctactccatttagtagtaataatctatgtcggagaacatgtgagatacataaagtgaattcttccttttcaaccaaatttttccatacac |
675 |
Q |
| |
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||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| |
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| T |
43746451 |
tacgaaatttctatcccatttagtagtactaatctatgtcgaagaacatgtgagatatataaggtgagttcttccttttcaaccaaatttttccatacac |
43746352 |
T |
|
| Q |
676 |
atgagccanaaattgaactcctaaccaaatgttgaaggggcccaaatcccttaccacttgaaccaatctattgttggttctctttgttcttttttaatta |
775 |
Q |
| |
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|||||| | |||| |||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43746351 |
atgagctagaaatcaaacttctaaccaaatgttgaagggacccaaatcccttaccagttgaaccaatctattgttggttctctttgttcttttttaatta |
43746252 |
T |
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| Q |
776 |
tccaaaattaaagta |
790 |
Q |
| |
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|||||||| |||||| |
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| T |
43746251 |
tccaaaataaaagta |
43746237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 751
Target Start/End: Original strand, 140414 - 140443
Alignment:
| Q |
722 |
tcccttaccacttgaaccaatctattgttg |
751 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
140414 |
tcccttaccacttgaaccaatctattgttg |
140443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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