View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243-INSERTION-9 (Length: 527)
Name: NF0243-INSERTION-9
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243-INSERTION-9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Complemental strand, 29866698 - 29866178
Alignment:
| Q |
8 |
ctttcttagtaaaaaagaaatgtatacgtataacttctcccaaccatgcatcaatgaaatacatgaattacattaactcaaagtacatatatatgtcctt |
107 |
Q |
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| T |
29866698 |
ctttcttagtaaaaaagaaatgtatacgtataacttctcccaaccatgcatcaatgaaatacatgaattacattaactcaaagtacatatatatgtcctt |
29866599 |
T |
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| Q |
108 |
ccagtcaaagtacatgaaacctaaactatggtgcattttgctctagaataacttaaccgtgtggtgaaacctaaatatctaacctaaactaattaatgta |
207 |
Q |
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| T |
29866598 |
ccagtcaaagtacatgaaacctaaactatggtgcattttgctctagaataacttaaccgtgtggtgaaacctaaatatctaacctaaactaattaatgta |
29866499 |
T |
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| Q |
208 |
gtactttatgtgtagggtttgtgaagtaattgatcatattgaggcaatacagattaccaaatcattattgatgattcactcatatttgtgtttaggtcag |
307 |
Q |
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| T |
29866498 |
gtactttatgtgtagggtttgtgaagtaattgatcatattgaggcaagacagattaccaaatcattattgatgattcactcatatttgtgtttaggtcag |
29866399 |
T |
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| Q |
308 |
agtttctaaaaggacattgaaggatatttttgtttctctctatttgttggarggtagaaggc-aagtgtagaaaaggtagtgaaaataygtagttggtaa |
406 |
Q |
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| T |
29866398 |
agtttctaaaaggacattgaaggatatttttgtttctctctatttgttggaaggtagaaggcaaagtgtagaaaaggtagtgaaaatatgtagttggtaa |
29866299 |
T |
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| Q |
407 |
tgtgggaccttgcgcagtgtgaaaatcgggttggcagaatgggctttgtgggttgaaacaaccctaaactcatacaatttgggacccaccataccgagtc |
506 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29866298 |
tgtgggaccttgcgcagtgtgaaaattgggttggcagaatgggctttgtgggttgaaacaaccctaaactcatacaatttgggacccaccataccgagtc |
29866199 |
T |
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| Q |
507 |
acgtgagccttaaataccaga |
527 |
Q |
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| T |
29866198 |
acgtgagccttaaatagcaga |
29866178 |
T |
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