View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_high_1 (Length: 598)
Name: NF0243_high_1
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_high_1 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 251 - 598
Target Start/End: Complemental strand, 32888049 - 32887696
Alignment:
| Q |
251 |
gtttagatgagatgacacgagtctctttcagtttaatcaagatcatatgtttaaatccaatcttgaacatgtagcagcattaaaacttaaagtttgatgt |
350 |
Q |
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| T |
32888049 |
gtttatatgagatgacacgagtgtcttccagtttaatcaaggttatatgttcaaatccagccttaaacatgtagcagcattaaaatttaaagttttccgt |
32887950 |
T |
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| Q |
351 |
ccacagttacgcgcagaagatactctgtttaagaaaagaaaagaatatatgaagatatgagaaaacatatgatataa-------taagagttttattaac |
443 |
Q |
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| T |
32887949 |
ccatagttgcatgcagaagatactcggttaaaaaaaagaaaagaatatatgaagatatgagaaaacatatgatatatgatatagtaagagttttattaac |
32887850 |
T |
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| Q |
444 |
aagctggatttacaaactcggaaatggaaccaagccattannnnnnnatacacaatccttgaatttcattgctggtgtgcccattttaaatgatcaatgc |
543 |
Q |
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| T |
32887849 |
aagctggatgtacaaactcggaa-tggaaccaagccattatttttttatacacaatccttgaatttcattgctggtgtgcccattttaaatgatcaatga |
32887751 |
T |
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| Q |
544 |
tcaccaattcaagcttaatgtgctaatcggtcaaatttttatctttttgtttgct |
598 |
Q |
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| T |
32887750 |
tcaccaaatcaatcttattgtgctaaacggtcaaatttttatctttatgtttgct |
32887696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 31 - 182
Target Start/End: Complemental strand, 32888270 - 32888119
Alignment:
| Q |
31 |
caacttcatatgttattcttgtaaataaaacttcatatataaagtattcattgcttgaggtattttggttttaccttataggatatttattggtgggaat |
130 |
Q |
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| T |
32888270 |
caacttcatatgttattcttgtaaataaaacttcatatataaagtattcattgctcgaggtattttggttttaccttataggatatttattggtgggaat |
32888171 |
T |
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| Q |
131 |
atttgtcaccgttattaggaccagtgcatgtttaattttgcagggagatcgc |
182 |
Q |
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| T |
32888170 |
atttgtcaccgttattaggaccagtgcatgtttaattttgcagggagatcgc |
32888119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 21089398 - 21089352
Alignment:
| Q |
247 |
gaacgtttagatgagatgacacgagtctctttcagtttaatcaagat |
293 |
Q |
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| T |
21089398 |
gaacgtttagatgagatgacacaagtctcttctagtttaaccaagat |
21089352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 36086845 - 36086881
Alignment:
| Q |
250 |
cgtttagatgagatgacacgagtctctttcagtttaa |
286 |
Q |
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| T |
36086845 |
cgtttagatgagatgacaagagtctcttttagtttaa |
36086881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 338
Target Start/End: Complemental strand, 33404432 - 33404347
Alignment:
| Q |
253 |
ttagatgagatgacacgagtctctttcagtttaatcaagatcatatgtttaaatccaatcttgaacatgtagcagcattaaaactt |
338 |
Q |
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| T |
33404432 |
ttagatgagatgacacaagtctcttatagctcaaccaaagtcatgggtttgaatccaattttaagcatgtagcagcattaaaactt |
33404347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 321
Target Start/End: Complemental strand, 3772693 - 3772625
Alignment:
| Q |
253 |
ttagatgagatgacacgagtctctttcagtttaatcaagatcatatgtttaaatccaatcttgaacatg |
321 |
Q |
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|||||||||||||||| |||||||| | ||||| |||| || || ||| |||||||||||||||||| |
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| T |
3772693 |
ttagatgagatgacacaagtctcttctaatttaaccaaggtcctaagttcgaatccaatcttgaacatg |
3772625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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