View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_high_15 (Length: 444)
Name: NF0243_high_15
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 40046595 - 40046435
Alignment:
| Q |
1 |
aaaagccttgttcttagataattttcatcaattgtagttttacccgactaaaaatattaaaaaataacatttgtacaacctttttgagataacatcttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40046595 |
aaaagccttgttcttagataattttcatcaattgtagttttacccgactaaaaatattaaaaaataacatttgtacaacctttttgagataacatcttct |
40046496 |
T |
|
| Q |
101 |
ttcctcttcttttgggacaaaaataagagagaattgtctcaaaaatatactataattgttg |
161 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40046495 |
ttcctcttcttttgagacaaaaataagagagaattgtctcaaaaatatactataattgttg |
40046435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 238 - 360
Target Start/End: Complemental strand, 40046347 - 40046225
Alignment:
| Q |
238 |
gatatttataacaagatcaatgaactacaggtggacatgctagcgatgtttctattattccttcnnnnnnnnnnnnnngacgatgtttctattaaggttg |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
40046347 |
gatatttataacaagatcaatgaactacaggtggacatgctagcgatgtttctattattccttcaaaaaaaaaaaaaaaacgatatttctattaaggttg |
40046248 |
T |
|
| Q |
338 |
ccatgccttaccactctcatggc |
360 |
Q |
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||||||||||||||||||||||| |
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| T |
40046247 |
ccatgccttaccactctcatggc |
40046225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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