View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_high_2 (Length: 548)
Name: NF0243_high_2
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-135; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 8893968 - 8894248
Alignment:
| Q |
30 |
gaaagcctgtcaaagtaaatggatactcgcttgtttggattccttatgaagattgtgaattgcattgagattgacatgtctggtggtgaagttgcattga |
129 |
Q |
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| T |
8893968 |
gaaagcctgtcaaagtaaatggatactcgcttgtttggattccttatgaagattgtgaattgcattgagattgacatgtctggcggtgaagtagcattga |
8894067 |
T |
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| Q |
130 |
ggccatagatagcagcacttgtgactgtgatgtgaggttttgtgggatggtatgcaagccataagatgaggattataatgccaagtacgaggaagaagat |
229 |
Q |
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||| |||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8894068 |
ggctatagattgcagcacttgtgactgtgatatgaggttttgagggatggtatgcaagccataagatgaggattataatgccaagtacaaggaagaagat |
8894167 |
T |
|
| Q |
230 |
tgtgatgcatatgcagtgttcacgttttggagcattaggtactctataacgaggaaccatacatttgtcttccatgggata |
310 |
Q |
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| T |
8894168 |
tgtgatgcatatgcagtgttcacgttttggagcattaggtactctataacgaggaaccatacctttgtgttccatgggata |
8894248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 422 - 496
Target Start/End: Original strand, 8894402 - 8894476
Alignment:
| Q |
422 |
agggaaatgacgttgtgaatggggttgttggttaggatcttcttgacgttctatatgcattatctcttcttccat |
496 |
Q |
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| T |
8894402 |
agggaaatgacgttgtgaatggggttgttggttaggatcttcttgacgttctatatgcattatttctccttccat |
8894476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 212350 - 212389
Alignment:
| Q |
196 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
235 |
Q |
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| T |
212350 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
212389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 239904 - 239865
Alignment:
| Q |
196 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
235 |
Q |
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| T |
239904 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
239865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 725973 - 726012
Alignment:
| Q |
196 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
235 |
Q |
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|
| T |
725973 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
726012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 793259 - 793220
Alignment:
| Q |
196 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
235 |
Q |
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|||||| |||||||||||||| |||||||||||||||||| |
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| T |
793259 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
793220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 798474 - 798513
Alignment:
| Q |
196 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
235 |
Q |
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| T |
798474 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
798513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 177 - 259
Target Start/End: Original strand, 24281855 - 24281937
Alignment:
| Q |
177 |
tggtatgcaagccataagatgaggattataatgccaagtacgaggaagaagattgtgatgcatatgcagtgttcacgttttgg |
259 |
Q |
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||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| | |||||||||||| |
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| T |
24281855 |
tggtatgcaagccataagatgagcagtataatgccaagtaagaggaagaagattgtgatgcatatgcaatattcacgttttgg |
24281937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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