View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_high_30 (Length: 338)
Name: NF0243_high_30
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_high_30 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 6955957 - 6955666
Alignment:
| Q |
1 |
tcctcttggtctcggtcaatgaaggtagccctaatttctaagaacaagcttcga------gacggcacttttcaatgtccttcatctacgaatgtcttgc |
94 |
Q |
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| T |
6955957 |
tcctcttggtctcagtcaatgaaggtagccctaatttctaagaacaagcttcgatttatcgacggcagttttcaatgtccttcatctacgaatgtcttgc |
6955858 |
T |
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| Q |
95 |
acgagccatggatccgctgcaacaacatggttctctcatggcttcaacgctcaatttctgaaagtatttctaaatccattttatggatcgacaaagtctc |
194 |
Q |
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| T |
6955857 |
acgagccatggatccgctgcaacaacatggttctctcatggcttcaacgctcaatttctgaaagtatttctaaatccattttatggatcgacaaagtctc |
6955758 |
T |
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| Q |
195 |
ctctgtttggacaaatcttgaacttcgtttttcacaaggagatatttttggaatcgctgatattcaagatgacctaactcgatttcaacaag |
286 |
Q |
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| T |
6955757 |
ttctgtttggccaaatcttgaacttcgtttttcacaaggggatattttttgaattgctgatattcaagatgacctaactcgatttcaacaag |
6955666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 111 - 286
Target Start/End: Original strand, 22454767 - 22454942
Alignment:
| Q |
111 |
ctgcaacaacatggttctctcatggcttcaacgctcaatttctgaaagtatttctaaatccattttatggatcgacaaagtctcctctgtttggacaaat |
210 |
Q |
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| T |
22454767 |
ctgcaacaacatggttctctcatggcttcaatgctcaatttttgaaagtatttctaaatccattttatggatcgacaaagcctcctctgtttggacaaat |
22454866 |
T |
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| Q |
211 |
cttgaacttcgtttttcacaaggagatatttttggaatcgctgatattcaagatgacctaactcgatttcaacaag |
286 |
Q |
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| T |
22454867 |
cttgaacttcgtttttcacaaggggatattttttgaatcgctgatattcaagatgacctaactcgatttcaacaag |
22454942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 10812 - 10860
Alignment:
| Q |
280 |
caacaagctgctgccaactctgtcctttaccaatctgcatccattcatt |
328 |
Q |
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| T |
10812 |
caacaagctgctgccaactctgtcctttcccaatctgcatccattcatt |
10860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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