View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_high_40 (Length: 299)
Name: NF0243_high_40
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 53 - 230
Target Start/End: Complemental strand, 18464648 - 18464471
Alignment:
| Q |
53 |
agcagagattcggcgtgtcctggagattgcatctgctgctaaagttgaggctgcaaattacttcctgatgatgttggatgcttctgctgcaggaggtctt |
152 |
Q |
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| T |
18464648 |
agcagagattcggcgggtcctagagattgcatctgctgctaaagttgaggctgcaaattacttcctgatgatgttggatgcttctgatgtaggaggtctt |
18464549 |
T |
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| Q |
153 |
gagattgaaagagcaatctctactttcaccaggttttttagggctcagaagcttggagaacttcgactgtgcatggtg |
230 |
Q |
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| T |
18464548 |
gagattgaaagagcaatctctactttcaccaggttttttagggctcagaagcttggagaacttcgactgtgcatggtg |
18464471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 16190043 - 16189971
Alignment:
| Q |
76 |
agattgcatctgctgctaaagttgaggctgcaaattacttcctgatgatgttggatgcttctgctgcaggagg |
148 |
Q |
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| T |
16190043 |
agattgcatatgctgctaaaaccgaagctgcagattacttcttgatgttgctagatgcttctgctgaaggagg |
16189971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 16601787 - 16601659
Alignment:
| Q |
78 |
attgcatctgctgctaaagttgaggctgcaaattacttcctgatgatgttggatgcttctgctgcaggaggtcttgagattgaaagagcaatctctactt |
177 |
Q |
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| T |
16601787 |
attgcatctgctgctggtgttgagtctgcaaattatttcttgatgatgttggatgtttcggctacaagtggttttctagttgaaagagctgtttctacct |
16601688 |
T |
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| Q |
178 |
tcaccaggttttttagggctcagaagctt |
206 |
Q |
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|||| || ||||||||| |||| |||||| |
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| T |
16601687 |
tcacaagattttttaggactcaaaagctt |
16601659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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