View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_high_44 (Length: 285)
Name: NF0243_high_44
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_high_44 |
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| [»] scaffold0045 (3 HSPs) |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 43 - 285
Target Start/End: Complemental strand, 25504 - 25262
Alignment:
| Q |
43 |
ttatatatattaccctaagcttttttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagttgatatatatccagcagc |
142 |
Q |
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| T |
25504 |
ttatatatattaccctaagcttttttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagttgatatatatccagcagc |
25405 |
T |
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| Q |
143 |
tactagagagacaatgttgtctacaacttctttgtcactcaatttgtcaccatcatcatcttcaatttgcatcaacccatccattagatcaattgtttcc |
242 |
Q |
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| T |
25404 |
tactagagagacaatgttgtctacaacttctttgtcactcaatttgtcaccatcatcatcttcaatttgcatcaacccatccattagatcaattgtttcc |
25305 |
T |
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| Q |
243 |
accttatctttattctttctgttatctaattccatcccgaaaa |
285 |
Q |
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| T |
25304 |
accttatctttattctttctgttatctaattccatcccgaaaa |
25262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 67 - 279
Target Start/End: Complemental strand, 32690 - 32478
Alignment:
| Q |
67 |
ttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagttgatatatatccagcagctactagagagacaatgttgtctac |
166 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |
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| T |
32690 |
ttagcacaattggatacttagcaagaaggtaaatagcccaagttgatgcaagggaagtagggatatatccagcagccactagagagacaatgttgtctac |
32591 |
T |
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| Q |
167 |
aacttctttgtcactcaatttgtcaccatcatcatcttcaatttgcatcaacccatccattagatcaattgtttccaccttatctttattctttctgtta |
266 |
Q |
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| T |
32590 |
aacttctttgtcactcaatttatcaccttcaccatcttcaatttgcatcaacccatccattagatcacttgtttcaaccttattttcagcttttcttttc |
32491 |
T |
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| Q |
267 |
tctaattccatcc |
279 |
Q |
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| T |
32490 |
tctaattccatcc |
32478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 53 - 279
Target Start/End: Complemental strand, 40091 - 39862
Alignment:
| Q |
53 |
taccctaagcttttttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagttgatatatatccagcagctactagagag |
152 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |||||||| | |||| ||||||||| || ||||||||| || ||||||||| |
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| T |
40091 |
taccctaagcttttttagaacaattggatacttagcaagaaggtaaatagcccacatggatgaaagggaagtagacatatatccaccaatcactagagag |
39992 |
T |
|
| Q |
153 |
acaatgttgtctacaacttctttgtcactcaatttgtcaccatcatcatcttcaatttgcatcaacccatccattagatcaattg---tttccaccttat |
249 |
Q |
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| T |
39991 |
acaatgttgtctacaacttctttgtcactcaatttatcaccttcaccatcttcaatttgcatcaacccatccattagatcacttgtacttttcaccttat |
39892 |
T |
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| Q |
250 |
ctttattctttctgttatctaattccatcc |
279 |
Q |
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| T |
39891 |
tttcattctttcttttacctaactccatcc |
39862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 43 - 285
Target Start/End: Original strand, 4719 - 4962
Alignment:
| Q |
43 |
ttatatatattaccctaagctttt-ttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagttgatatatatccagcag |
141 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4719 |
ttatatatattaccctaagctttttttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagttgatagatatccagcag |
4818 |
T |
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| Q |
142 |
ctactagagagacaatgttgtctacaacttctttgtcactcaatttgtcaccatcatcatcttcaatttgcatcaacccatccattagatcaattgtttc |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4819 |
ctactagagagacaatgttgtctacaacttctttgtcactcaatttgtcaccatcatcatcttcaatttgcatcaacccatccattagatcaattgtttc |
4918 |
T |
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| Q |
242 |
caccttatctttattctttctgttatctaattccatcccgaaaa |
285 |
Q |
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||||||||||||||| ||||||||||||| ||| |||| ||||| |
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| T |
4919 |
caccttatctttattttttctgttatctatttcaatccagaaaa |
4962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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