View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0243_high_45 (Length: 283)

Name: NF0243_high_45
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0243_high_45
NF0243_high_45
[»] chr5 (14 HSPs)
chr5 (1-255)||(25477662-25477916)
chr5 (5-234)||(25469724-25469953)
chr5 (95-254)||(32660658-32660819)
chr5 (1-261)||(32651320-32651580)
chr5 (3-232)||(32748035-32748267)
chr5 (4-256)||(32768245-32768499)
chr5 (2-257)||(32557368-32557623)
chr5 (185-247)||(32655772-32655834)
chr5 (2-75)||(32710673-32710746)
chr5 (44-152)||(32858860-32858968)
chr5 (176-237)||(32752074-32752135)
chr5 (98-165)||(32763335-32763402)
chr5 (98-152)||(28475213-28475267)
chr5 (183-225)||(32553070-32553112)
[»] chr7 (4 HSPs)
chr7 (2-169)||(7969393-7969563)
chr7 (2-260)||(37577453-37577711)
chr7 (98-260)||(32894973-32895135)
chr7 (220-257)||(7969623-7969660)
[»] chr1 (1 HSPs)
chr1 (1-147)||(17583849-17583995)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 25477916 - 25477662
Alignment:
Q  1 tggttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttggtacttttc 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  25477916 tggttgacttctcttggatgttgtaattggcaatggtctggcagtcgtctagttgcttaccggaaaatatcagacgttgatcgttcacttggtacttttc 25477817  T
Q  101 cttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaaccgtcaaggggatcaccttactttccatggtctttatgaatattagcatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25477816 cttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaaccctcaaggggatcaccttactttccatggtctttatgaatattagcatc 25477717  T
Q  201 tgcaccgcaattgccaaaacattaatcaatgataaaagcaacagaaagaaaacaa 255  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25477716 tgcaccgcaattgccaacacattaatcaatgataaaagcaacagaaagaaaacaa 25477662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 25469953 - 25469724
Alignment:
Q  5 tgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttggtacttttccttg 104  Q
    ||||||||||| ||||||||||||||||||||||||    |||  |||||| |||||||||||||||||||||| |||| | | |  |||||||||||||    
T  25469953 tgacttctcttcgatgttgcaattggcaatggtctgatgatcaggtagttgattaccggaaaagatcagacgttgatcgattattgcgtacttttccttg 25469854  T
Q  105 tcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaaccgtcaaggggatcaccttactttccatggtctttatgaatattagcatctgca 204  Q
    | ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |||||| |  ||||   |||||||||||||| ||||||| |    
T  25469853 ttaaaaatcttctccttcacactgtatatcgtgtctgaactcttaaccctcaagggtaacacctttccatccagcttctttatgaatatttgcatctgta 25469754  T
Q  205 ccgcaattgccaaaacattaatcaatgata 234  Q
    || |||||||||| ||| ||||||||||||    
T  25469753 ccacaattgccaacacagtaatcaatgata 25469724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 254
Target Start/End: Original strand, 32660658 - 32660819
Alignment:
Q  95 cttttccttgtcaaaaatcttctccttcacactg--tctatcgtgtctgaactcttaaccgtcaaggggatcaccttactttccatggtctttatgaata 192  Q
    |||||||| |||||||||||||||||||||||||  | ||| |||| |||||| |||||| ||||||||||   ||| ||   ||||||| ||||||| |    
T  32660658 cttttcctcgtcaaaaatcttctccttcacactgattatattgtgtatgaactattaaccctcaaggggatattctttctagtcatggtcattatgaaaa 32660757  T
Q  193 ttagcatctgcaccgcaattgccaaaacattaatcaatgataaaagcaacagaaagaaaaca 254  Q
    || ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  32660758 tttgcatctgcatcgcaattgccaacacattaatcaatggtaaaagcaacagaaagaaaaca 32660819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 32651320 - 32651580
Alignment:
Q  1 tggttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttggtacttttc 100  Q
    |||||||||| ||||||||| || ||| ||||| | || ||| ||| |||||||| ||||| | |||||||| |||||  |||| |||| ||  ||||||    
T  32651320 tggttgacttatcttggatgatgtaatcggcaaggatccggccgtcctctagttgtttaccagcaaagatcaaacgttggtcgtacactggggtcttttc 32651419  T
Q  101 cttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaaccgtcaaggggatcaccttactttccatggtctttatgaatattagcatc 200  Q
    || ||||| |||||||||||||||| | ||||| |||||  |||| |||||| ||| | ||||   ||| ||    |||  | || |||| ||| ||| |    
T  32651420 ctcgtcaacaatcttctccttcacattttctatggtgtccaaactattaaccctcaggaggatacactttctagttatgccccttgtgaaaattcgcaac 32651519  T
Q  201 tgcaccgcaattgccaaaacattaatcaatgataaaagcaacagaaagaaaacaaaacccc 261  Q
    ||||  ||||||||||| |||| |||||||||| ||||||||| |||||||||||||||||    
T  32651520 tgcattgcaattgccaacacatcaatcaatgattaaagcaacataaagaaaacaaaacccc 32651580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 32748267 - 32748035
Alignment:
Q  3 gttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttggtacttttcct 102  Q
    ||||||||||||||||||||| || |||||| |||||||| ||  |||||||||||   |||||||| ||||||||  | ||  ||  ||  |  |||||    
T  32748267 gttgacttctcttggatgttgtaactggcaagggtctggcggttctctagttgcttcttggaaaagaacagacgttgttggtggacagggatcccttcct 32748168  T
Q  103 tgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaaccgtcaaggggatcaccttactttcc---atggtctttatgaatattagcat 199  Q
    ||||   || ||| | ||||||| ||  |||||||||||||||||||||| ||| ||||| |  |||  ||||    ||| |||||||||||||| ||||    
T  32748167 tgtcctgaacctttttcttcacattgagtatcgtgtctgaactcttaaccatcagggggaacctcttgttttcatatatgatctttatgaatatttgcat 32748068  T
Q  200 ctgcaccgcaattgccaaaacattaatcaatga 232  Q
    |||||||||||||||||| ||||||||||||||    
T  32748067 ctgcaccgcaattgccaacacattaatcaatga 32748035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 256
Target Start/End: Complemental strand, 32768499 - 32768245
Alignment:
Q  4 ttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttggtacttttcctt 103  Q
    |||||||||||||||||||||||||||||| ||||| |  ||||||| ||||| |||||| ||| |||| |||||  | ||  ||| ||  |  ||||||    
T  32768499 ttgacttctcttggatgttgcaattggcaagggtctcgttgtcatctcgttgcctaccggcaaatatcaaacgttgttggtgtactgggatcccttcctt 32768400  T
Q  104 gtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaaccgtcaaggggatcacctta--ctttccatg-gtctttatgaatattagcatc 200  Q
    || ||||| ||||| ||||||| |  |||||||||||||| |||||||| ||| ||| || | ||||  ||||||| |  | |||||  |||||  ||||    
T  32768399 gt-aaaaaacttcttcttcacattaactatcgtgtctgaaatcttaaccctcaggggaataatcttaatctttccaggcatatttattgatatttccatc 32768301  T
Q  201 tgcaccgcaattgccaaaacattaatcaatgataaaagcaacagaaagaaaacaaa 256  Q
    |||||  ||||||| || |||| ||||||||| |||||||| ||||||||||||||    
T  32768300 tgcacgacaattgctaacacatgaatcaatgacaaaagcaatagaaagaaaacaaa 32768245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 257
Target Start/End: Original strand, 32557368 - 32557623
Alignment:
Q  2 ggttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttggtacttttcc 101  Q
    ||||| |||||||||||||||| ||| ||||| ||| |||| |||||||||| |||||  || ||| ||||||||||  | || |||| ||  | |||||    
T  32557368 ggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcactgggatcgtttcc 32557467  T
Q  102 ttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaaccgtcaaggggatcaccttacttt--ccatggtctttatgaatattagcat 199  Q
    ||||||| |||||| ||||||||| |  ||||||||||||||||||  ||| |||||||| ||| ||| |     |||||  ||  ||||||||| ||||    
T  32557468 ttgtcaagaatcttatccttcacatttgctatcgtgtctgaactctccaccttcaagggggtcatctttccacaaccatgtgct--atgaatatttgcat 32557565  T
Q  200 ctgcaccgcaattgccaaaacattaatcaatgataaaagcaacagaaagaaaacaaaa 257  Q
    |||||||||| | ||||| | || ||||||| || ||| || |||||| |||||||||    
T  32557566 ctgcaccgcagtcgccaacaaataaatcaataatgaaaccaccagaaataaaacaaaa 32557623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 32655772 - 32655834
Alignment:
Q  185 tatgaatattagcatctgcaccgcaattgccaaaacattaatcaatgataaaagcaacagaaa 247  Q
    |||||||||| |||||||||||||||||||||| |||||||||| |||| |||||||||||||    
T  32655772 tatgaatatttgcatctgcaccgcaattgccaacacattaatcagtgattaaagcaacagaaa 32655834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 32710746 - 32710673
Alignment:
Q  2 ggttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagac 75  Q
    |||||||||||||||||||||| ||||||||| |||||| |||||| |||||| ||||| || |||||||||||    
T  32710746 ggttgacttctcttggatgttgtaattggcaagggtctgacagtcagctagttccttactggcaaagatcagac 32710673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 32858968 - 32858860
Alignment:
Q  44 gtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttggtactttt-ccttgtcaaaaatcttctccttcacactgtctatcgtgtctga 142  Q
    ||||||||||| |||||||||||| ||||||||||   |||  | |||||| |||| ||||||||| |||| ||||||||||| || |||||||||||||    
T  32858968 gtcatctagttccttaccggaaaatatcagacgttggccgtgta-ttggtaatttttccttgtcaagaatcatctccttcacattgactatcgtgtctga 32858870  T
Q  143 actcttaacc 152  Q
    ||||||||||    
T  32858869 actcttaacc 32858860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 32752135 - 32752074
Alignment:
Q  176 catggtctttatgaatattagcatctgcaccgcaattgccaaaacattaatcaatgataaaa 237  Q
    |||| |||||||||||||| |||||||  ||||||||||||| |||||||||||||| ||||    
T  32752135 catgatctttatgaatatttgcatctgtgccgcaattgccaacacattaatcaatgaaaaaa 32752074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 32763402 - 32763335
Alignment:
Q  98 ttccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaaccgtcaaggggatca 165  Q
    ||||||||||| |||||| | ||||||| | ||||| ||||||||||||| |||| ||||||||||||    
T  32763402 ttccttgtcaagaatctttttcttcacattttctattgtgtctgaactctcaaccctcaaggggatca 32763335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 28475267 - 28475213
Alignment:
Q  98 ttccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaacc 152  Q
    ||||||||||| |||||||| |||||||  | |||||||||||||||||| ||||    
T  28475267 ttccttgtcaagaatcttcttcttcacatcgactatcgtgtctgaactctcaacc 28475213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 32553070 - 32553112
Alignment:
Q  183 tttatgaatattagcatctgcaccgcaattgccaaaacattaa 225  Q
    |||||||||||| |||||||||||||||||| ||| |||||||    
T  32553070 tttatgaatatttgcatctgcaccgcaattgtcaacacattaa 32553112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 2 - 169
Target Start/End: Original strand, 7969393 - 7969563
Alignment:
Q  2 ggttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttggta--cttt- 98  Q
    ||||||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||| || ||||||||||||||   |||  ||||||||  ||||     
T  7969393 ggttgacctctcttggatgttgcaattggcaatggtcaggctgtcatctaattgcttactggcaaagatcagacgttgcacgtgtacttggtaatcttta 7969492  T
Q  99 tccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaaccgtcaaggggatcacctt 169  Q
    | |||||| |||||||||||||||||| || |||| ||||||||||||||||||   | ||||||||||||    
T  7969493 ttcttgtcgaaaatcttctccttcacattgcctattgtgtctgaactcttaacccctatggggatcacctt 7969563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 260
Target Start/End: Complemental strand, 37577711 - 37577453
Alignment:
Q  2 ggttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagacgtt-catcgttcacttggtacttttc 100  Q
    |||||||||||||||||||| | ||||||||| |||| |||  | |||||||| |||||||| |||||||||||||| |||  | || | ||  |  |||    
T  37577711 ggttgacttctcttggatgtggtaattggcaagggtcaggctattatctagttccttaccggcaaagatcagacgttgcat-atgcattgggatcccttc 37577613  T
Q  101 cttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaaccgtcaaggggatcaccttactttccatggtctttatgaatattagcatc 200  Q
     ||||||| ||||||||||||||||  | ||||||||||||||||||||| | |||  ||||||  ||| ||    | ||||  |||| |||||||||||    
T  37577612 attgtcaagaatcttctccttcacatcggctatcgtgtctgaactcttaatcctcagtgggatcctctttctagtgagggtcaatatgtatattagcatc 37577513  T
Q  201 tgcaccgcaattgccaaaacattaatcaatgataaaagcaacagaaagaaaacaaaaccc 260  Q
    ||||   || ||| ||| ||||||||| |||| |||||||||||||||||||||||||||    
T  37577512 tgcaagacatttggcaacacattaatccatgacaaaagcaacagaaagaaaacaaaaccc 37577453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 32895135 - 32894973
Alignment:
Q  98 ttccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaaccgtcaaggggatcaccttactttccatggtctttatgaatattagc 197  Q
    |||||| |||| |||||||||| | ||| ||  |||| ||||||||||||||||| ||| ||||| |  ||  |   ||  ||||| |||||||||| ||    
T  32895135 ttccttctcaagaatcttctccattacattgaatatcctgtctgaactcttaaccatcagggggaacctctctccaccctgggtctctatgaatatttgc 32895036  T
Q  198 atctgcaccgcaattgccaaaacattaatcaatgataaaagcaacagaaagaaaacaaaaccc 260  Q
    |||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||| ||||||    
T  32895035 atctgcaccgcaattgccaacacattaatcaataataaaagcaacaaaaacaaaaccaaaccc 32894973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 7969623 - 7969660
Alignment:
Q  220 cattaatcaatgataaaagcaacagaaagaaaacaaaa 257  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  7969623 cattaatcaatgataaaaacaacataaagaaaacaaaa 7969660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 17583995 - 17583849
Alignment:
Q  1 tggttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttggtacttttc 100  Q
    ||||||||||||||||||||||| ||| ||||| |||| ||  ||| |||||||||||||||  ||||||||||||||  | || ||||      | |||    
T  17583995 tggttgacttctcttggatgttgtaatcggcaagggtccggttgtcctctagttgcttaccgtcaaagatcagacgttgctggtgcactgcaatatcttc 17583896  T
Q  101 cttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactct 147  Q
    |||||||| |||||||| ||||||| |   |||||||||||||||||    
T  17583895 cttgtcaagaatcttcttcttcacattcattatcgtgtctgaactct 17583849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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