View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0243_high_48 (Length: 278)
Name: NF0243_high_48
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_high_48 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 46905658 - 46905394
Alignment:
| Q |
1 |
ttactcatttcataaaaaactaatatttaacaccaagataagtagataactnnnnnnncactacttcaaagtttgatttatcatgttagcaagataacta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46905658 |
ttactcatttcataaaaaactaatatttaacaccaagataagtagataactaaaaaaacactacttcaaagtttgatttatcatgttagcaagataacta |
46905559 |
T |
|
| Q |
101 |
acttacattaccagcaatagccaagttttccattgctttcaaatcctcccaatcagtggccaccatgagagtccggagctccacaaaactcaactccatc |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46905558 |
acttacattaccagcaatagtcaagttttccattgctttcaaatcctcccaatcagtggccaccatgagagtccggagctctacaaaactcaactccatc |
46905459 |
T |
|
| Q |
201 |
tccttgtcagtacccaattcaggtaccttatcagaaacatcgatagcccagtaaacgttatcttc |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46905458 |
tccttgtcagtacccaattcaggtaccttatcagaaacatcgatagcccagtaaacgttatcttc |
46905394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2487 times since January 2019
Visitors: 2401