View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_high_54 (Length: 264)
Name: NF0243_high_54
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 29 - 262
Target Start/End: Complemental strand, 55738796 - 55738563
Alignment:
| Q |
29 |
acctatattatgaaaaaatgacaaagtttaattgattaacaaacatgacattagcactagtttgtaatatagattatgtctcaactcttaaacactagca |
128 |
Q |
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| T |
55738796 |
acctatattatgaaaaaatgacaaagtttaattgattaacaaacatgacattagcactagtttgtaatatagattatgtctcaactcttaaacactagca |
55738697 |
T |
|
| Q |
129 |
catatcggacaccagacaagacttcaatctgaagacaaaagagagatacatgtagtacttacactgacacttccatcaccaacaaggccatggaaaaaag |
228 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55738696 |
catatcggacaccagacacgacttcaatctgaagacaaaagagagatacatgtagtacttacactgacacttccatcaccaacaaggccatggaaaaaag |
55738597 |
T |
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| Q |
229 |
ttccccatccgggaatgtcatctgtgctccttct |
262 |
Q |
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| T |
55738596 |
ttccccatccgggaatgtcatctgtgatccttct |
55738563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 9379735 - 9379667
Alignment:
| Q |
184 |
tacttacactgacacttccatcaccaacaaggccatggaaaaaagttccccatccgggaatgtcatctg |
252 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||| ||||||||| || | |||||||| |
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| T |
9379735 |
tacttacactgatgcttccatcaccaacaaggccatggaacaaaactccccatccaggtaagtcatctg |
9379667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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