View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0243_high_64 (Length: 251)
Name: NF0243_high_64
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_high_64 |
 | |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 1775979 - 1776198
Alignment:
| Q |
30 |
ccacacatgttgtatattgttgtgcccagtccccatagcagtaacgaattaaattgtggctttaaacttgaatttcagggtcagaattaataaacaaaac |
129 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1775979 |
ccacacatgttgtatattgttgtgtccagcccccatagcagtaacgaattaaattgtggctttaaacttgaatttcagggtcagaattaataaacaaaac |
1776078 |
T |
|
| Q |
130 |
catccagaaaactattctcaacgcaggtccacccaagaaaacatcagaattaaaattgaaaaaacggcacataacaaagtggttgttcagcatggtggta |
229 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1776079 |
catccagaaaactattctcaacataggtccacccaagaaaatatcagaattaaaattgaaaaaacggcacataacaaagtggttgttcagcatggtggca |
1776178 |
T |
|
| Q |
230 |
caagagggtcgagatggaaa |
249 |
Q |
| |
|
|||||||| | ||||||||| |
|
|
| T |
1776179 |
caagagggccaagatggaaa |
1776198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 30 - 235
Target Start/End: Complemental strand, 51047814 - 51047609
Alignment:
| Q |
30 |
ccacacatgttgtatattgttgtgcccagtccccatagcagtaacgaattaaattgtggctttaaacttgaatttcagggtcagaattaataaacaaaac |
129 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51047814 |
ccacacatgttgtatattgttgtccccagcccccatagttgtaacaaattaaattgtggctttaaacttgaatttcagggtcataattaataaacaaaat |
51047715 |
T |
|
| Q |
130 |
catccagaaaactattctcaacgcaggtccacccaagaaaacatcagaattaaaattgaaaaaacggcacataacaaagtggttgttcagcatggtggta |
229 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
51047714 |
catccaaaaaattattctcaacgcaggtccacccaagaaaagatcagaattaaaattgaaaaaacagcacataacaaagtggttgttcagcatggtggca |
51047615 |
T |
|
| Q |
230 |
caagag |
235 |
Q |
| |
|
|||||| |
|
|
| T |
51047614 |
caagag |
51047609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 106632 - 106724
Alignment:
| Q |
30 |
ccacacatgttgtatattgttgtgcccagtccccatagcagtaacgaattaaattgtggctttaaacttgaatttcagggtcagaattaataaa |
123 |
Q |
| |
|
||||||||||||||||| ||||| || || |||||| ||| ||||||||||||| | |||||||||||||||||||| || |||||||||||| |
|
|
| T |
106632 |
ccacacatgttgtatatcgttgtcccaag-ccccatggcattaacgaattaaatgggggctttaaacttgaatttcacagtaagaattaataaa |
106724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 10365460 - 10365514
Alignment:
| Q |
89 |
ctttaaacttgaatttcagggtcagaattaataaacaaaaccatccagaaaactat |
144 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||| | ||||||||||||||||||| |
|
|
| T |
10365460 |
ctttaaacttgaattttacggtcagtattaataagc-aaaccatccagaaaactat |
10365514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2732 times since January 2019
Visitors: 2404