View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_high_69 (Length: 251)
Name: NF0243_high_69
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_high_69 |
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Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 32060819 - 32060742
Alignment:
| Q |
144 |
gggtgatttgattcaattaccaagtggagccaaacacgaagataacgtaaatcgtttctgtaacgtcgatcgagctcg |
221 |
Q |
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| T |
32060819 |
gggtgatttgattcaattaccaagtggagccaaacacgaagataacgtaaatcgtttctgtaacgtcgatcgagctcg |
32060742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 32060949 - 32060884
Alignment:
| Q |
14 |
aaaatcactaaacatttcattattccttaatttcaacctaatcacaaaatccaacacaataacact |
79 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32060949 |
aaaatcactaaacatttcattattccttaatttcaacctaatcacaaaatccaacacaataacact |
32060884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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