View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_high_72 (Length: 246)
Name: NF0243_high_72
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_high_72 |
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| [»] scaffold0125 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 21843715 - 21843534
Alignment:
| Q |
1 |
caatgaagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaagaatcaaaagggaatttct- |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21843715 |
caatgaagacccaaataatcaaaacaacaaaaacataatctagatctaaatagatatcttcaaagaatacccaaaaacaagaatcaaaagggaatttcta |
21843616 |
T |
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| Q |
100 |
nnnnnnnnnttatatgaaactaatgaagtccattcaaaggtgaaagaacacctaaaattaaaattcaaggaagagatttacc |
181 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21843615 |
aaaaaaaaattatatgaaattaatgaagtccattcaaaggtgaaacaacacctaaaattaaaattcaaggaagagatttacc |
21843534 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 20137 - 20306
Alignment:
| Q |
1 |
caatgaagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaagaatcaaaagggaatttctn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20137 |
caatgaagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaagaatcaaaagggaatttcta |
20236 |
T |
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| Q |
101 |
nnnnnnnnttatatgaaactaatgaagtccattcaaaggtgaaagaacacctaaaattaaaattcaaggaa |
171 |
Q |
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|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20237 |
aatttttttt-tatgaaactaatgaagtccattcaaaggtgaaacaacacctaaaattaaaattcaaggaa |
20306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 10660175 - 10659988
Alignment:
| Q |
1 |
caatgaagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaagaatcaaaagggaatttctn |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
10660175 |
caatgtagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaaaaatcaaaagggaattcct- |
10660077 |
T |
|
| Q |
101 |
nnnnnnnnttatatgaaactaatgaagtccattcaaaggtgaaagaacacctaaaattaaaattcaaggaagagatttaccccaattat |
189 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||| | ||| ||||||| || |||||| |||||||||| |||| |
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| T |
10660076 |
aaaaaaaattatatgaaactaatgaagttcattcaaaggtgaaacaacaacaaaagttaaaatgcagggaagaaatttaccccagttat |
10659988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 10874320 - 10874133
Alignment:
| Q |
1 |
caatgaagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaagaatcaaaagggaatttctn |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
10874320 |
caatgtagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaaaaatcaaaagggaattcct- |
10874222 |
T |
|
| Q |
101 |
nnnnnnnnttatatgaaactaatgaagtccattcaaaggtgaaagaacacctaaaattaaaattcaaggaagagatttaccccaattat |
189 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||| | ||| ||||||| || |||||| |||||||||| |||| |
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| T |
10874221 |
aaaaaaaattatatgaaactaatgaagttcattcaaaggtgaaacaacaacaaaagttaaaatgcagggaagaaatttaccccagttat |
10874133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 12818520 - 12818667
Alignment:
| Q |
1 |
caatgaagacccaaataatcaaaacaacaaaaaca--taatctagacctaaatagatatcttcaaagaatacccaaaaacaagaatcaaaagggaatttc |
98 |
Q |
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||||||||||||||| ||||||||||| ||||| | ||||||| |||| | ||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
12818520 |
caatgaagacccaaacaatcaaaacaaaaaaaaaacgtaatctatgtttaaa--gttatcttcaaagaatacccaaaaaaaagaatcaaaagggaattcc |
12818617 |
T |
|
| Q |
99 |
tnnnnnnnnnttatatgaaactaatgaagtccattcaaaggtgaaagaaca |
149 |
Q |
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| T |
12818618 |
taaaaaattg-tatatgaaactaatgaagttcattcaaaggtgaaacaaca |
12818667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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