View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_103 (Length: 223)
Name: NF0243_low_103
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_103 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 33809250 - 33809090
Alignment:
| Q |
41 |
tccattcttcttcatatttcttaatcgaagcaaactcattcggtatcacttctcgacccgatgaatccgtcgctaattcaaatccttctttcaccgacgg |
140 |
Q |
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| T |
33809250 |
tccattcttcttcatatttcttaatcgaagcaaactcattcggtatcacttctcgacccgatgaatgcgtcgctaattcaaatccttctttcaccgacgg |
33809151 |
T |
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| Q |
141 |
cgtcgccaccgaagatattcacatcgatcctttgacctgggtttagcttcttgttaattat |
201 |
Q |
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| T |
33809150 |
cgtcgccacaaaagatattcacatcgatcctttgacctgggtttagcttcttgttaattat |
33809090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 44257454 - 44257486
Alignment:
| Q |
178 |
tgggtttagcttcttgttaattatgtcatgtgt |
210 |
Q |
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| T |
44257454 |
tgggtttagcttcttattaattatgtcatgtgt |
44257486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 41 - 210
Target Start/End: Complemental strand, 39539064 - 39538896
Alignment:
| Q |
41 |
tccattcttcttcatatttcttaatcgaagcaaactcattcggtatcacttctcgacccgatgaatccgtcgctaattcaaatccttctttcaccgacgg |
140 |
Q |
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| T |
39539064 |
tccattctt-ttcatatttcttaattgaagcaaactcattcggtatcacttctccacccgaagaatccgtcgctaattcaaatccttctttcaccgacgg |
39538966 |
T |
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| Q |
141 |
cgtcgccaccgaagatattcacatcgatcctttgacctgggtttagcttcttgttaattatgtcatgtgt |
210 |
Q |
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| T |
39538965 |
cgttgccaccaaagatattcacatcgatcctttcacctgggtttagcttcttgttaattacgtcatgtgt |
39538896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 41 - 210
Target Start/End: Complemental strand, 6306864 - 6306695
Alignment:
| Q |
41 |
tccattcttcttcatatttcttaatcgaagcaaactcattcggtatcacttctcgacccgatgaatccgtcgctaattcaaatccttctttcaccgacgg |
140 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
6306864 |
tccattcttcttcatatttcttaaccgaagcaaactcattcagtatcacttctcgacctgaagaatccgtcgctaattcaaatccttctttcaccgacgg |
6306765 |
T |
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| Q |
141 |
cgtcgccaccgaagatattcacatcgatcctttgacctgggtttagcttcttgttaattatgtcatgtgt |
210 |
Q |
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| T |
6306764 |
cgtcgccaccaaagatattcacatcgatcctttcaccctggtttagcttcttattaattatgtcatgtgt |
6306695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 36 - 210
Target Start/End: Complemental strand, 20803 - 20629
Alignment:
| Q |
36 |
gctcctccattcttcttcatatttcttaatcgaagcaaactcattcggtatcacttctcgacccgatgaatccgtcgctaattcaaatccttctttcacc |
135 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
20803 |
gctcttccattcttcttcatgtttcttaatcgaagcaaactcattcggtatcacttctccacccgaagaatccgtcgctaattcaaatccttctttcacc |
20704 |
T |
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| Q |
136 |
gacggcgtcgccaccgaagatattcacatcgatcctttgacctgggtttagcttcttgttaattatgtcatgtgt |
210 |
Q |
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||| || |||||||| |||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |
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| T |
20703 |
gacagcatcgccaccaaagatattcacatcgatcctttcgcttggatttagcttcttgttaattatgtcatgtgt |
20629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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