View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0243_low_12 (Length: 496)
Name: NF0243_low_12
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 94 - 485
Target Start/End: Original strand, 44471389 - 44471780
Alignment:
| Q |
94 |
cctttggcgtcaattattgcgaacactattaattactggaatcaattaatatgcttattatatttcgtcaaagatcaaatgtcaagaagcatatagaagc |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44471389 |
cctttggcgtcaattattgcgaacactattaattactagaattaattaatatgcttattatatttcgtcaaagatcaaatgtcaagaagcatatagaagc |
44471488 |
T |
|
| Q |
194 |
agcgtaatacgtattagggctagctaggtaggctcaaataaggttgc-ttctaattactgtttgtttttaccagctaataactgttttaatacggaagaa |
292 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44471489 |
agtgtaatacgtattagggctagctaggtaggctcgaataaggttcctttctaattactgtttgtttttaccagctaataactgttttaatacggaagaa |
44471588 |
T |
|
| Q |
293 |
aaactaagaaataaacaaatctctttaaaaaaga---tgaataatcaagttacannnnnnnatgagatttacattagtctcttacactgtccgcnnnnnn |
389 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
44471589 |
aaactaagaaataaacaaatttctttaaaaaatatattgaatgatcaagttacatttttttatgagatttacattagtctcttacactgtccacaaaaaa |
44471688 |
T |
|
| Q |
390 |
nnnnncttagtctattacactacatatatatagagactaattttagttaattgcatagaactataatattttaatataacaaattctagtatctct |
485 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44471689 |
aaaaacttagtctcttacactac----atatagagactaattttagttaattgcatagaactataatattttaatataacaaattctagtatctct |
44471780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 275
Target Start/End: Original strand, 44476099 - 44476199
Alignment:
| Q |
175 |
tcaagaagcatatagaagcagcgtaatacgtattagggctagctaggtaggctcaaataaggttgcttctaattactgtttgtttttaccagctaataac |
274 |
Q |
| |
|
|||| |||||||||||| | || ||||||||||||||||||||||||| |||||||||||| | |||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
44476099 |
tcaataagcatatagaaaccgcataatacgtattagggctagctaggttggctcaaataagatagcttttaattgctgtttgtttttaccagctaataac |
44476198 |
T |
|
| Q |
275 |
t |
275 |
Q |
| |
|
| |
|
|
| T |
44476199 |
t |
44476199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 425 - 482
Target Start/End: Original strand, 44476305 - 44476363
Alignment:
| Q |
425 |
actaattttagttaattgcatagaactataata-ttttaatataacaaattctagtatc |
482 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
44476305 |
actaattttagttaattgcatagaactagaatatttttaatataacaaattttagtatc |
44476363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 44485860 - 44485908
Alignment:
| Q |
143 |
tatgcttattatatttcgtcaaagatcaaat-gtcaagaagcatataga |
190 |
Q |
| |
|
||||| |||||||||| |||||||||||||| ||| ||||||||||||| |
|
|
| T |
44485860 |
tatgcatattatattttgtcaaagatcaaatcgtccagaagcatataga |
44485908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2244 times since January 2019
Visitors: 2400