View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0243_low_15 (Length: 480)
Name: NF0243_low_15
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_15 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 13 - 451
Target Start/End: Complemental strand, 5299679 - 5299241
Alignment:
| Q |
13 |
gagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5299679 |
gagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacct |
5299580 |
T |
|
| Q |
113 |
acacaccaaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcgacttcttttcatcgtttactgatccctttgagtctaggatcaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5299579 |
acacaccaaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcgacttcttttcatcgtgtactgatccctttgagtctaggatcaa |
5299480 |
T |
|
| Q |
213 |
agaattgctagagaagttagaatttctagcaaagcaaaaggatatgttagggttaaaacaagaaatttgtgctagtaatgaaggtgaagtcggttggaaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5299479 |
agaattgctagagaagttagaatttctagcaaagcaaaaggatatgttagggttaaaacaagaaatttgtgctagtaatgaaggtgaagtcggttggaaa |
5299380 |
T |
|
| Q |
313 |
gctttaaaaagattgccaagtacatctttggtggatgaatcgagcatatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgaca |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5299379 |
gctttaaaaagattgccaagtacatctttggtggatgaatcgagcatatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgaca |
5299280 |
T |
|
| Q |
413 |
tagatgctggcgatcgtgtaccaataatcagcatggtgg |
451 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
5299279 |
tagatgctggcgaccgtgtaccaataatcagcatagtgg |
5299241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 37 - 451
Target Start/End: Complemental strand, 5268980 - 5268566
Alignment:
| Q |
37 |
tacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacctacacaccaaacaagaagctgaaag |
136 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || ||||| | || || || || |||||||||||||| | |||||| ||||||| |||| |
|
|
| T |
5268980 |
tacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatacaccattgaagaagcagaaac |
5268881 |
T |
|
| Q |
137 |
ttgattctcaaccttctactagcaaggtattcgacttcttttcatcgtttactgatccctttgagtctaggatcaaagaattgctagagaagttagaatt |
236 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||| || || ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5268880 |
ttgaatctcaaccttctactagcaaggtattcgacttcatttcgtctttcactaatccatttgagtctaggatcaaagaattgctagagaagctagaatt |
5268781 |
T |
|
| Q |
237 |
tctagcaaagcaaaaggatatgttagggttaaaacaagaaatttgtgctagtaatgaaggtgaagtcggttggaaagctttaaaaagattgccaagtaca |
336 |
Q |
| |
|
||| ||||| |||||| ||||| | || ||||||||||| ||||||||||| |||||||| ||| |||||||| | ||| | |||||||||| |||| |
|
|
| T |
5268780 |
tcttgcaaaacaaaagcatatgcttggattaaaacaagacgcttgtgctagtagtgaaggtggagttagttggaaacccttagatagattgccaactaca |
5268681 |
T |
|
| Q |
337 |
tctttggtggatgaatcgagcatatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgacatagatgctggcgatcgtgtaccaa |
436 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||| ||| |||||||| || |||||||| ||| | | |||||||| |
|
|
| T |
5268680 |
tctttggtggatgaatccagcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacaagggcaaccatgtaccaa |
5268581 |
T |
|
| Q |
437 |
taatcagcatggtgg |
451 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
5268580 |
taatcagcatagtgg |
5268566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 5251111 - 5250679
Alignment:
| Q |
19 |
aagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacctacacac |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||| || ||||| | || || || || |||||||||||||| | ||| |
|
|
| T |
5251111 |
aagcaataccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcac |
5251012 |
T |
|
| Q |
119 |
caaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcgacttcttttcatcgtttactgatccctttgagtctaggatcaaagaatt |
218 |
Q |
| |
|
|| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||| |||||||| |||||||| |
|
|
| T |
5251011 |
cactgaagaagctgaaagctgaatctcaaccttctactagcaaggtattcgacttcttttcatctttcactaatccatttgaatctaggattaaagaatt |
5250912 |
T |
|
| Q |
219 |
gctagagaagttagaatttctagcaaagcaaaaggatatgttagggttaaaacaagaaatttgtgctagtaatgaaggtgaagtcggttggaaagcttta |
318 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||| | || || ||||| || || |||||||| |||||||| || |||||||| | ||| |
|
|
| T |
5250911 |
gctagagaagctagaatttcttgcaaagcaaaaggatatgctcggattgaaacatgaggcttttgctagtagtgaaggtggcgttagttggaaaccctta |
5250812 |
T |
|
| Q |
319 |
aaaagattgccaagtacatctttggtggatgaatcgagcatatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgacatagatg |
418 |
Q |
| |
|
| ||||| |||| |||| |||||||||||||||||||||||||||| |||||||||||||| ||||| ||| | |||||||| || |||||| | |
|
|
| T |
5250811 |
gatagatttccaactacagctttggtggatgaatcgagcatatatggtagagatggtgacaaggaggagttaattgattttttactgtctgacataaaca |
5250712 |
T |
|
| Q |
419 |
ctggcgatcgtgtaccaataatcagcatggtgg |
451 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||| |
|
|
| T |
5250711 |
gtggcaatcatgtaccaataatcagcatagtgg |
5250679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 146 - 416
Target Start/End: Original strand, 4388151 - 4388421
Alignment:
| Q |
146 |
aaccttctactagcaaggtattcgacttcttttcatcgtttactgatccctttgagtctaggatcaaagaattgctagagaagttagaatttctagcaaa |
245 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| || | | |||| ||||| |||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
4388151 |
aaccttctactagcaaggtattcaacttcttttcatctttcattaatccatttgaatctaggatcaaagaattgctagagaagttagaatttcttgcgaa |
4388250 |
T |
|
| Q |
246 |
gcaaaaggatatgttagggttaaaacaagaaatttgtgctagtaatgaaggtgaagtcggttggaaagctttaaaaagattgccaagtacatctttggtg |
345 |
Q |
| |
|
||||||||||||| | || | |||||||| | |||||||||| |||||||| | || |||||||| | || | |||||| |||| ||||||||||||| |
|
|
| T |
4388251 |
gcaaaaggatatgctcggactgaaacaagacacctgtgctagtagtgaaggtggactcagttggaaacccttgataagatttccaactacatctttggtg |
4388350 |
T |
|
| Q |
346 |
gatgaatcgagcatatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgacataga |
416 |
Q |
| |
|
|||| ||||||||||||||| ||| | |||||||||||||| || ||| |||||||| || |||||||| |
|
|
| T |
4388351 |
gatggatcgagcatatatggtagaaacggtgacaaagaggagttagtcaactttttactgtctgacataga |
4388421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 8455609 - 8455513
Alignment:
| Q |
9 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
105 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||| || ||||||||| |
|
|
| T |
8455609 |
agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgatcttaaacatgttgtttatgaagcagaccaactattagatgagatt |
8455513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 6736945 - 6736849
Alignment:
| Q |
9 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
105 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||||||||||||||| ||| |||||||||||| | ||||||||||| ||||| |||||||||||| |
|
|
| T |
6736945 |
agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttctttatgaagcagaccaactattggatgagatt |
6736849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 8590684 - 8590588
Alignment:
| Q |
9 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
105 |
Q |
| |
|
|||||||| |||||| |||| |||| ||| |||||||||||||||| ||| |||||||||||||| ||||||||||| ||||| || ||||||||| |
|
|
| T |
8590684 |
agcagagataaagcagtaccgaagcaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatt |
8590588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 6553512 - 6553608
Alignment:
| Q |
9 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
105 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||| || ||||||||| |
|
|
| T |
6553512 |
agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatt |
6553608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 6479056 - 6479151
Alignment:
| Q |
9 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagat |
104 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||||||||||||||| | | |||||||||||||| ||||||||||| ||||| || |||||||| |
|
|
| T |
6479056 |
agcagagataaagcagtaccaaatcatatatgtgaagaagtggcttgataaacttaaacatgttgtttatgaagcagaccaactattagatgagat |
6479151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 6519246 - 6519332
Alignment:
| Q |
19 |
aagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
105 |
Q |
| |
|
||||| ||||||| | ||| |||||||||||||||| ||| |||||||||||||| ||||||||||| ||||| || ||||||||| |
|
|
| T |
6519246 |
aagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatt |
6519332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 405
Target Start/End: Original strand, 6479331 - 6479455
Alignment:
| Q |
281 |
gtgctagtaatgaaggtgaagtcggttggaaagctttaaaaagattgccaagtacatctttggtggatgaatcgagcatatatggcagagatggtgacaa |
380 |
Q |
| |
|
|||||||||||||||| |||| |||||||| ||| |||||||||| || ||| || | |||||||| || ||||||||||||||||||| |||||| |
|
|
| T |
6479331 |
gtgctagtaatgaaggcttagtcagttggaaaccttcaaaaagattgtcatctacggctctcgtggatgagtccagcatatatggcagagatgttgacaa |
6479430 |
T |
|
| Q |
381 |
agaggaagtaaccaaatttttactt |
405 |
Q |
| |
|
|| ||| | | ||||||||||||| |
|
|
| T |
6479431 |
ggaagaacttatcaaatttttactt |
6479455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 5281586 - 5281508
Alignment:
| Q |
29 |
aaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgc |
107 |
Q |
| |
|
||||| |||| || ||||||||||||| |||||||||||||| ||| ||||| ||||| ||| |||| ||||||||||| |
|
|
| T |
5281586 |
aaagcacatatgtaaagaagtggcttgatgatcttaaacatgctgtatatgaggcagaccaaattttcgatgagattgc |
5281508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 6948193 - 6948128
Alignment:
| Q |
40 |
gtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
105 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||| || ||||||||| |
|
|
| T |
6948193 |
gtgaagaagtggcttgatgaacttaaacatgttgtctatgaggcagaccaactgttagatgagatt |
6948128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 373
Target Start/End: Original strand, 8568334 - 8568389
Alignment:
| Q |
318 |
aaaaagattgccaagtacatctttggtggatgaatcgagcatatatggcagagatg |
373 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
8568334 |
aaaaagattgccaactgcgtctttggtggatgaatcttgcatatatggtagagatg |
8568389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 373
Target Start/End: Complemental strand, 8590410 - 8590317
Alignment:
| Q |
280 |
tgtgctagtaatgaaggtgaagtcggttggaaagctttaaaaagattgccaagtacatctttggtggatgaatcgagcatatatggcagagatg |
373 |
Q |
| |
|
||||||||||| ||||| |||| |||||||| ||| |||||| ||| || |||| || | |||||||| |||||||||||||| ||||||| |
|
|
| T |
8590410 |
tgtgctagtaacgaaggcttagtcagttggaaaccttcaaaaaggttgtcatctacagctcttgtggatgagtcgagcatatatggtagagatg |
8590317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 6259795 - 6259731
Alignment:
| Q |
348 |
tgaatcgagcatatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgaca |
412 |
Q |
| |
|
|||||| | ||||||||| ||||| |||| ||||||||| ||| ||||||||||||||| |||| |
|
|
| T |
6259795 |
tgaatctatcatatatggtagagaacgtgaaaaagaggaaataatcaaatttttactttcagaca |
6259731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 6837991 - 6838087
Alignment:
| Q |
10 |
gcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattg |
106 |
Q |
| |
|
|||||||||||| | ||||||| | | | |||||||||||| ||| | |||| ||||||| || ||||||| ||||||| | ||||||||||||| |
|
|
| T |
6837991 |
gcagagacaaagaagtaccaaaaccaaaatgtgaagaagtggtttgataatctaaaacatgaggtatatgaagtagatcaattgttggatgagattg |
6838087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 6551 - 6647
Alignment:
| Q |
9 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
105 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||| || ||||||||| |
|
|
| T |
6551 |
agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatt |
6647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 6572403 - 6572500
Alignment:
| Q |
10 |
gcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgc |
107 |
Q |
| |
|
||||||||||| || ||||||| | || ||||||||| ||||||| | ||| ||||||| || ||||||| ||||||| | |||||||||||||| |
|
|
| T |
6572403 |
gcagagacaaaacagtaccaaaacccaaacgtgaagatttggcttgatcgtctaaaacatgaggtatatgaagtagatcaattgttggatgagattgc |
6572500 |
T |
|
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