View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0243_low_18 (Length: 460)

Name: NF0243_low_18
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0243_low_18
NF0243_low_18
[»] chr5 (3 HSPs)
chr5 (31-454)||(40132131-40132552)
chr5 (85-140)||(12487102-12487157)
chr5 (83-140)||(33085337-33085394)
[»] chr2 (2 HSPs)
chr2 (99-205)||(38373347-38373450)
chr2 (83-140)||(32083090-32083147)
[»] chr3 (2 HSPs)
chr3 (77-146)||(34863453-34863523)
chr3 (90-134)||(31472058-31472102)
[»] chr1 (2 HSPs)
chr1 (87-205)||(2193268-2193383)
chr1 (83-136)||(41899009-41899062)
[»] chr7 (3 HSPs)
chr7 (99-141)||(39026863-39026905)
chr7 (99-140)||(3338468-3338509)
chr7 (83-140)||(18037846-18037903)
[»] chr4 (2 HSPs)
chr4 (99-205)||(14124200-14124303)
chr4 (99-140)||(37858265-37858306)
[»] chr6 (2 HSPs)
chr6 (99-146)||(5305144-5305191)
chr6 (83-140)||(2839059-2839116)


Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 31 - 454
Target Start/End: Complemental strand, 40132552 - 40132131
Alignment:
Q  31 ttgtttcttattaatgttaaatataga--tctttctcactaatactcaaaggttattggttaagaaatctattaataaaaactttattttgaaaatacaa 128  Q
    ||||||||||||||||||||||||||   | |||||||||||||||| || |||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  40132552 ttgtttcttattaatgttaaatatagggttttttctcactaatactctaacgttattggttaagaaatctattgataaaaattttattttgaaaatacaa 40132453  T
Q  129 atttttacttttaccttagttataataggtagaccattttttgatgtaaatttacatattttaatactttaatcaatatcataatttgtctttcatgctc 228  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40132452 atttttacttttaccttagttata---ggtagaccattttttgatgtaaatttacatattttaatactttaatcaatatcataatttgtctttcatgctc 40132356  T
Q  229 ccgaccataacacatgatgcaatacagtgctagatagaaacattaatgctttttagcaatctacaatctatctatatgacatgaaatctcataaatatat 328  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40132355 ccgaccataacata-gatgcaatacagtgctagatagaaacattaatgctttttagcaatccacaatctatctatatgacatgaaatctcataaatatat 40132257  T
Q  329 atagtctttctctttcattccttctccatctatctatctaattctatagtgaaaacactttcatggagtccaatatacnnnnnnnngtacttctctttgg 428  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| ||    
T  40132256 atagtctttctctttcattccttctccatccatctatctaattctatagtgaaaacactttcatggagtccaatatacttttttttgtacttctcttcgg 40132157  T
Q  429 tttcacttcattgattttcatctcac 454  Q
    ||||||||||||||||||||||||||    
T  40132156 tttcacttcattgattttcatctcac 40132131  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 12487102 - 12487157
Alignment:
Q  85 tggttaagaaatctattaataaaaactttattttgaaaatacaaatttttactttt 140  Q
    |||||||| ||||||||| || ||| ||| | ||||||||||||||||||||||||    
T  12487102 tggttaaggaatctattagtagaaattttgtcttgaaaatacaaatttttactttt 12487157  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 33085394 - 33085337
Alignment:
Q  83 attggttaagaaatctattaataaaaactttattttgaaaatacaaatttttactttt 140  Q
    |||||||||| |||| |||| || ||||||| | ||||||||| ||||||||||||||    
T  33085394 attggttaaggaatccattagtagaaactttgtcttgaaaatataaatttttactttt 33085337  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 38373347 - 38373450
Alignment:
Q  99 attaataaaaactttattttgaaaatacaaatttttacttttaccttagttataataggtagaccattttttgatgtaaatttacatattttaatacttt 198  Q
    ||||||| ||||||||| ||| |||||||| |||||||||||| |||||  |||||   || ||||||||| |||| |||||||| |||||||||| |||    
T  38373347 attaatagaaactttatcttggaaatacaagtttttacttttatcttagcaataat---tacaccatttttcgatgcaaatttacttattttaatatttt 38373443  T
Q  199 aatcaat 205  Q
    || ||||    
T  38373444 aaccaat 38373450  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 32083147 - 32083090
Alignment:
Q  83 attggttaagaaatctattaataaaaactttattttgaaaatacaaatttttactttt 140  Q
    ||||||||| |||||||| |||||||| |||||||| |||||| ||||||||||||||    
T  32083147 attggttaaaaaatctatcaataaaaattttattttaaaaatataaatttttactttt 32083090  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 34863523 - 34863453
Alignment:
Q  77 aaggttattggttaagaaatctattaataaaaactttattttgaaaatacaaattt-ttacttttacctta 146  Q
    |||| |||| ||||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||| ||||    
T  34863523 aaggatattcgttaagaaatctattaaaaaaaactttattttaaaaatacaagtttgttacttttatctta 34863453  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 31472058 - 31472102
Alignment:
Q  90 aagaaatctattaataaaaactttattttgaaaatacaaattttt 134  Q
    |||||| |||| |||||||| ||||||||||||||| ||||||||    
T  31472058 aagaaaactataaataaaaaatttattttgaaaatataaattttt 31472102  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 2193268 - 2193383
Alignment:
Q  87 gttaagaaatctattaataaaaactttattttgaaaatacaaatttttacttttaccttagttataataggtagaccattttttgatgtaaatttacata 186  Q
    |||||| | |||||||||| ||||||||| ||||||||| |||| |||||||||  ||||   || ||   || |||| |||| ||||||||||||| ||    
T  2193268 gttaaggattctattaatagaaactttatcttgaaaatataaatctttacttttttcttatcaatgat---tacaccacttttcgatgtaaatttactta 2193364  T
Q  187 ttttaatactttaatcaat 205  Q
    |||||||||||||| ||||    
T  2193365 ttttaatactttaaccaat 2193383  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 41899062 - 41899009
Alignment:
Q  83 attggttaagaaatctattaataaaaactttattttgaaaatacaaatttttac 136  Q
    |||| |||||||||||||||| ||||||||||| || |||||||||||| ||||    
T  41899062 attgtttaagaaatctattaaaaaaaactttatcttaaaaatacaaattgttac 41899009  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 39026905 - 39026863
Alignment:
Q  99 attaataaaaactttattttgaaaatacaaatttttactttta 141  Q
    ||||||| |||||||||||||||||||| ||||||||||||||    
T  39026905 attaatagaaactttattttgaaaatacgaatttttactttta 39026863  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 3338468 - 3338509
Alignment:
Q  99 attaataaaaactttattttgaaaatacaaatttttactttt 140  Q
    |||||||||||| || | ||||||||||||||||||||||||    
T  3338468 attaataaaaacattgtcttgaaaatacaaatttttactttt 3338509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 18037846 - 18037903
Alignment:
Q  83 attggttaagaaatctattaataaaaactttattttgaaaatacaaatttttactttt 140  Q
    |||| |||||||||| || |||||||| ||| ||||||||||| ||||| ||||||||    
T  18037846 attgattaagaaatccataaataaaaattttgttttgaaaatataaattgttactttt 18037903  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 14124303 - 14124200
Alignment:
Q  99 attaataaaaactttattttgaaaatacaaatttttacttttaccttagttataataggtagaccattttttgatgtaaatttacatattttaatacttt 198  Q
    ||||||| ||||||| ||||| ||||| || |||||||||||  |||||  | |||   || ||||||||| |||| |||||||| ||||||||||||||    
T  14124303 attaatagaaactttgttttggaaatataagtttttacttttttcttagcaaaaat---tacaccatttttcgatgcaaatttacttattttaatacttt 14124207  T
Q  199 aatcaat 205  Q
    || ||||    
T  14124206 aaccaat 14124200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 37858306 - 37858265
Alignment:
Q  99 attaataaaaactttattttgaaaatacaaatttttactttt 140  Q
    ||||||| ||||||||| |||||||||||| |||||||||||    
T  37858306 attaatagaaactttatcttgaaaatacaagtttttactttt 37858265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 5305191 - 5305144
Alignment:
Q  99 attaataaaaactttattttgaaaatacaaatttttacttttacctta 146  Q
    ||||||||||||||| ||| |||||||||| |||||||||||| ||||    
T  5305191 attaataaaaactttgtttagaaaatacaagtttttacttttatctta 5305144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 2839116 - 2839059
Alignment:
Q  83 attggttaagaaatctattaataaaaactttattttgaaaatacaaatttttactttt 140  Q
    |||||||||| |||| |||| || ||||||| | ||||||||| ||||||||||||||    
T  2839116 attggttaaggaatccattagtagaaactttgtcttgaaaatataaatttttactttt 2839059  T

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