View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0243_low_19 (Length: 460)

Name: NF0243_low_19
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0243_low_19
NF0243_low_19
[»] chr4 (16 HSPs)
chr4 (33-229)||(31529105-31529301)
chr4 (51-206)||(31030343-31030498)
chr4 (51-206)||(31020462-31020617)
chr4 (51-206)||(31488935-31489090)
chr4 (51-203)||(31159864-31160016)
chr4 (31-204)||(31496292-31496465)
chr4 (33-206)||(31501460-31501633)
chr4 (44-220)||(31150959-31151135)
chr4 (33-206)||(31482186-31482362)
chr4 (376-453)||(31035053-31035126)
chr4 (122-220)||(31476336-31476434)
chr4 (35-87)||(31163606-31163658)
chr4 (55-86)||(31162245-31162276)
chr4 (36-86)||(31244507-31244557)
chr4 (37-86)||(31476470-31476519)
chr4 (126-183)||(31162316-31162375)
[»] chr6 (16 HSPs)
chr6 (33-202)||(12781322-12781491)
chr6 (33-202)||(12782073-12782242)
chr6 (33-202)||(12785512-12785681)
chr6 (31-171)||(33060126-33060266)
chr6 (33-190)||(31566474-31566631)
chr6 (34-171)||(33361072-33361209)
chr6 (33-169)||(33288148-33288284)
chr6 (33-190)||(33265455-33265612)
chr6 (33-190)||(33274599-33274756)
chr6 (31-172)||(33641985-33642126)
chr6 (33-93)||(9169431-9169491)
chr6 (31-92)||(33390644-33390705)
chr6 (33-84)||(12786252-12786303)
chr6 (33-92)||(33403184-33403243)
chr6 (33-172)||(33307059-33307198)
chr6 (33-206)||(33412491-33412664)
[»] chr2 (1 HSPs)
chr2 (33-190)||(17438039-17438196)
[»] scaffold1749 (1 HSPs)
scaffold1749 (33-190)||(719-876)
[»] scaffold0428 (1 HSPs)
scaffold0428 (33-190)||(9480-9637)
[»] chr8 (1 HSPs)
chr8 (124-169)||(6473158-6473203)
[»] chr5 (2 HSPs)
chr5 (48-81)||(16466056-16466089)
chr5 (42-78)||(500125-500161)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 33 - 229
Target Start/End: Original strand, 31529105 - 31529301
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctc 132  Q
    ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| | | |||||   ||| | ||| || | || |||||| |    
T  31529105 ccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgtacgcaatgaaggatgtattgcaattccc 31529204  T
Q  133 gcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgcacgatgcagttcaggtgcaacagattc 229  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||    |||||||||| || |||||| | ||||||||||| | ||||||    
T  31529205 gcaagcaccaagttgaggaagcatagttgtttgagaagacaacaatgaaagtccgagaggcttcgatagcacgaaggagttcaggtgctatagattc 31529301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 31030343 - 31030498
Alignment:
Q  51 tcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctcgcaagcaccaagttgagg 150  Q
    |||||||||||||||||||| |||||||| ||||||||| ||| | | | ||||||||| ||||| || | | |||||||||||||||||||||||||||    
T  31030343 tcagaaggatcaacatcataaaaaacaggaagaacacgtcttccagaaacttgactgcagtcaaggatgtgtaccaattctcgcaagcaccaagttgagg 31030442  T
Q  151 aagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgcacga 206  Q
    ||||||||||||| |||| |||| |||||||||| |||||  ||||||||||||||    
T  31030443 aagcatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacga 31030498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 31020462 - 31020617
Alignment:
Q  51 tcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctcgcaagcaccaagttgagg 150  Q
    |||||||||||||||||||| |||||||| ||||||||| ||| | | | ||||||||| ||||| || | | |||||||||||||||||||||||||||    
T  31020462 tcagaaggatcaacatcataaaaaacaggaagaacacgtcttccagaaacttgactgcagtcaaggatgtgtaccaattctcgcaagcaccaagttgagg 31020561  T
Q  151 aagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgcacga 206  Q
    ||| ||||||||| |||| |||| |||||||||| |||||  ||||||||||||||    
T  31020562 aagaatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacga 31020617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 31489090 - 31488935
Alignment:
Q  51 tcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctcgcaagcaccaagttgagg 150  Q
    |||||||||||||||||||| |||||||| ||||||||| ||| | | | ||||||| | | ||| || | |||||||||||||||||||||||||||||    
T  31489090 tcagaaggatcaacatcataaaaaacaggaagaacacgtcttccaaaaacttgactgtagtgaaggatgtattccaattctcgcaagcaccaagttgagg 31488991  T
Q  151 aagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgcacga 206  Q
    ||||||||||||| |||| |||| |||||||||| |||||  ||||||||||||||    
T  31488990 aagcatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacga 31488935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 31159864 - 31160016
Alignment:
Q  51 tcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctcgcaagcaccaagttgagg 150  Q
    ||||||||||||||||||||||||| ||| ||||||||  ||| | | | ||||||||| | ||| || | |||||| |||||||||||||| |||||||    
T  31159864 tcagaaggatcaacatcatagaaaatagggagaacacgagttccagaaacttgactgcagtgaaggatgtattccaactctcgcaagcaccatgttgagg 31159963  T
Q  151 aagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgca 203  Q
    |||||||||||||||||||||  ||||| ||||| |  |||||||||||||||    
T  31159964 aagcatagttttttgagaagagtacaataaaaacctttgaggcttcaattgca 31160016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 204
Target Start/End: Complemental strand, 31496465 - 31496292
Alignment:
Q  31 ttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatag-ttgactgcattcaagaatcttttccaatt 129  Q
    |||||||||||||||||||   |||||| ||||||||||||||||||||||||||| |||||  | |||  |||||  |||||||| |||||||| ||||    
T  31496465 ttccactttgctttcgcaccatagaagggtcaacatcatagaaaacaggcagaacatgttttttagataccttgacc-cattcaaggatcttttctaatt 31496367  T
Q  130 ctcgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgcac 204  Q
    || |||||||| |||||||| ||||||||||  |||| ||||||||||  ||||| ||||||  |||||||||||    
T  31496366 cttgcaagcacgaagttgagaaagcatagttccttgataagaccacaacaaaaacctgagagttttcaattgcac 31496292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 206
Target Start/End: Complemental strand, 31501633 - 31501460
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatata-gttgactgcattcaagaatcttttccaattct 131  Q
    |||||||||||||||||  | | ||||||||||||||||||||||||||||||| |||||  | ||| || ||| ||||||||| |||||||| ||||||    
T  31501633 ccactttgctttcgcaccacgggaggatcaacatcatagaaaacaggcagaacatgttttttagatacgtggac-gcattcaaggatcttttctaattct 31501535  T
Q  132 cgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgcacga 206  Q
     ||||||||||| ||||||||||||||||  |||||| |||| |||  |||| || |||  ||||||||||||||    
T  31501534 tgcaagcaccaaattgaggaagcatagttccttgagaggaccgcaacaaaaatataagaatcttcaattgcacga 31501460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 44 - 220
Target Start/End: Original strand, 31150959 - 31151135
Alignment:
Q  44 tcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctcgcaagcaccaa 143  Q
    |||||| || || ||||||||||||||||| ||||||||||||||||||| | ||||||||  || || ||| ||    |||||||||||||| ||||||    
T  31150959 tcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaa 31151058  T
Q  144 gttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgcacgatgcagttcaggtgc 220  Q
      ||||||||||||||| || ||||| |||||||  ||||  |||||| |||||||||| ||| | |||||||||||    
T  31151059 actgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgc 31151135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 206
Target Start/End: Complemental strand, 31482362 - 31482186
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaa---tcttttccaatt 129  Q
    |||||||||||||| || ||||| ||||  |||||||||||||||| | |||||||||||    || |||||||||| | |||||   | | | ||||||    
T  31482362 ccactttgctttcgtacctcagatggattgacatcatagaaaacagtccgaacacgtttttctgatggttgactgcagtgaagaaggatgtataccaatt 31482263  T
Q  130 ctcgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgcacga 206  Q
    | ||||||||||||||||||||||||||  | || || |||||||| |||||||  |||||| ||||||||||||||    
T  31482262 cacgcaagcaccaagttgaggaagcataactcttagacaagaccacgatgaaaatctgagagacttcaattgcacga 31482186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 376 - 453
Target Start/End: Original strand, 31035053 - 31035126
Alignment:
Q  376 tccttactgataagctaagttgtacatctcactcaagtctcaactatatatttattaaaactcttactagtattatat 453  Q
    |||||||| |||||||||||||| |||||||    ||||||||||||||||||||||||||||||||| |||||||||    
T  31035053 tccttacttataagctaagttgtgcatctca----agtctcaactatatatttattaaaactcttactggtattatat 31035126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 122 - 220
Target Start/End: Complemental strand, 31476434 - 31476336
Alignment:
Q  122 ttccaattctcgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgcacgatgcagttcaggtgc 220  Q
    ||||||||||  |||||||||||||||| |||| ||||| ||||| |||||||||| |||||| |||||  ||||||||||| ||   |||||||||||    
T  31476434 ttccaattctttcaagcaccaagttgagaaagcgtagttctttgacaagaccacaacgaaaacctgagacccttcaattgcatgaaagagttcaggtgc 31476336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 31163606 - 31163658
Alignment:
Q  35 actttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacac 87  Q
    ||||| ||||||||| |||||| ||||||| |||||||||| |||||||||||    
T  31163606 actttactttcgcacctcagaaagatcaacttcatagaaaataggcagaacac 31163658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 86
Target Start/End: Original strand, 31162245 - 31162276
Alignment:
Q  55 aaggatcaacatcatagaaaacaggcagaaca 86  Q
    ||||||||||||||||||||||||||||||||    
T  31162245 aaggatcaacatcatagaaaacaggcagaaca 31162276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 31244557 - 31244507
Alignment:
Q  36 ctttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaaca 86  Q
    |||||||||||||| ||||| ||||| ||||||||||||| ||| ||||||    
T  31244557 ctttgctttcgcacctcagatggatccacatcatagaaaataggtagaaca 31244507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 31476519 - 31476470
Alignment:
Q  37 tttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaaca 86  Q
    |||||||||||||   ||||||||||||||||||||| ||||| ||||||    
T  31476519 tttgctttcgcaccaaagaaggatcaacatcatagaacacaggtagaaca 31476470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 31162316 - 31162375
Alignment:
Q  126 aattctcgcaagcaccaa--gttgaggaagcatagttttttgagaagaccacaatgaaaa 183  Q
    |||||| |||||||||||  ||||||||||||||||| || || || |||||||||||||    
T  31162316 aattcttgcaagcaccaatagttgaggaagcatagttcttagaaaataccacaatgaaaa 31162375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 33 - 202
Target Start/End: Original strand, 12781322 - 12781491
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctc 132  Q
    |||||||||||| | || ||||||||||||||||||||||||||||| |||||  |||||| || |  || |||||| | ||| || | |||||||||||    
T  12781322 ccactttgcttttgtacctcagaaggatcaacatcatagaaaacaggaagaacgtgttttccatgttttttactgcaatgaaggatgtattccaattctc 12781421  T
Q  133 gcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgc 202  Q
    |||| ||||||||||||||||||||||| || ||||| || |||||| |||| |||||||||||||||||    
T  12781422 gcaaacaccaagttgaggaagcatagttcttagagaatacaacaatgtaaacctgagaggcttcaattgc 12781491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 33 - 202
Target Start/End: Original strand, 12782073 - 12782242
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctc 132  Q
    ||||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||| ||| | |  |||||| | ||| || | | | |||||||    
T  12782073 ccactttgctttcgcacctcagaaagatcaacatcataaaaaacaggcagaacgcgttttccatacaatacactgcagttaaggatgtatgctaattctc 12782172  T
Q  133 gcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgc 202  Q
    |||| ||||||||||| |||||||||||||| ||||| || ||||||||||| |||||| ||||||||||    
T  12782173 gcaaacaccaagttgaagaagcatagtttttagagaatacaacaatgaaaacctgagagccttcaattgc 12782242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 202
Target Start/End: Original strand, 12785512 - 12785681
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctc 132  Q
    |||||||||||| | || |||||||||||||||||||| |||| ||| ||||   |||||| ||||  || |||||| | ||| || | |||||||||||    
T  12785512 ccactttgcttttgtacctcagaaggatcaacatcataaaaaataggaagaatgtgttttccatattttttactgcaatgaaggatgtattccaattctc 12785611  T
Q  133 gcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgc 202  Q
    |||| ||||||||||| ||||||||||| || ||||| || |||||| |||  |||||||||||||||||    
T  12785612 gcaaacaccaagttgaagaagcatagttcttagagaatacaacaatgtaaagctgagaggcttcaattgc 12785681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 171
Target Start/End: Original strand, 33060126 - 33060266
Alignment:
Q  31 ttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattc 130  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||   |    | | ||||||||   |||||||| |||||    
T  33060126 ttccactttgcttccgcacctcagaaggatcaacatcatagaaaacaggaagaacatgttttcccgaccccttaatgcattcacatatcttttctaattc 33060225  T
Q  131 tcgcaagcaccaagttgaggaagcatagttttttgagaaga 171  Q
    | |||||||||| ||||||||||||||||| ||||||||||    
T  33060226 ttgcaagcaccacgttgaggaagcatagttctttgagaaga 33060266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 33 - 190
Target Start/End: Complemental strand, 31566631 - 31566474
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctc 132  Q
    |||||||||||||| || ||||||||||||||||||||||||||| | |||||| |||||  | ||   | | ||||||||  |||||| || ||||||     
T  31566631 ccactttgctttcgaacctcagaaggatcaacatcatagaaaacaagaagaacatgtttttcagattcctcaatgcattcacaaatcttctctaattctt 31566532  T
Q  133 gcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgaga 190  Q
    |||||||||| || ||||||||||| ||| ||||||||||  |||  |||||||||||    
T  31566531 gcaagcaccatgtcgaggaagcataatttcttgagaagacggcaacaaaaacatgaga 31566474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 34 - 171
Target Start/End: Original strand, 33361072 - 33361209
Alignment:
Q  34 cactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctcg 133  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||   ||   | | ||||||||   |||||||| |||||| |    
T  33361072 cactttgcttccgcacctcagaaggatcaacatcatagaaaacaggaagaacatgttttcctgatcccttaatgcattcacatatcttttctaattcttg 33361171  T
Q  134 caagcaccaagttgaggaagcatagttttttgagaaga 171  Q
    ||| ||||| |||||||||||||||||| |||| ||||    
T  33361172 caaacaccatgttgaggaagcatagtttcttgaaaaga 33361209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 169
Target Start/End: Original strand, 33288148 - 33288284
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctc 132  Q
    ||||||||||||||||| |||||||||||||||||||||||||| || ||||   ||||||   |||  |||   ||||||   |||||||| |||||      
T  33288148 ccactttgctttcgcacctcagaaggatcaacatcatagaaaactggaagaatgtgttttcttgatacatgaacacattcacatatcttttctaattcct 33288247  T
Q  133 gcaagcaccaagttgaggaagcatagttttttgagaa 169  Q
    |||||||||| |||||||||||||||||| |||||||    
T  33288248 gcaagcaccatgttgaggaagcatagtttcttgagaa 33288284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 33265455 - 33265612
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctc 132  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| || |||||| ||||||   ||   | |  |||||||   |||||||| ||||||     
T  33265455 ccactttgctttctcacatcagagggatcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattctt 33265554  T
Q  133 gcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgaga 190  Q
    | || ||||| |||||||||||||||||| |||| |||||| |||  ||||| |||||    
T  33265555 gtaaacaccatgttgaggaagcatagtttattgaaaagaccgcaacaaaaacttgaga 33265612  T

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Target: chr6; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 33274599 - 33274756
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctc 132  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| || |||||| ||||||   ||   | |  |||||||   |||||||| ||||||     
T  33274599 ccactttgctttctcacatcagagggatcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattctt 33274698  T
Q  133 gcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgaga 190  Q
    | || ||||| |||||||||||||||||| |||| |||||| |||  ||||| |||||    
T  33274699 gtaaacaccatgttgaggaagcatagtttattgaaaagaccgcaacaaaaacttgaga 33274756  T

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Target: chr6; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 33642126 - 33641985
Alignment:
Q  31 ttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattc 130  Q
    |||||||||||||||| || |||||||||||||||||||| |||| ||| |||||| |||||    ||   | | ||||||||  |||||| || |||||    
T  33642126 ttccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattc 33642027  T
Q  131 tcgcaagcaccaagttgaggaagcatagttttttgagaagac 172  Q
    | | | |||||| |||||||||||||||||| ||||||||||    
T  33642026 ttgaaggcaccatgttgaggaagcatagtttcttgagaagac 33641985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 9169431 - 9169491
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttc 93  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| | |||||| ||||||    
T  9169431 ccactttgctttcgcacctcagaaggatcaacatcatagaaaacaagaagaacatgttttc 9169491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 33390644 - 33390705
Alignment:
Q  31 ttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgtttt 92  Q
    |||||||||||||||| || |||||||||||||||||||| |||||||| |||||| |||||    
T  33390644 ttccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttt 33390705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 12786252 - 12786303
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaa 84  Q
    ||||||||||||||||| |||||||||||||||||||| |||| ||||||||    
T  12786252 ccactttgctttcgcacctcagaaggatcaacatcataaaaaataggcagaa 12786303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 33403184 - 33403243
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgtttt 92  Q
    |||||||||||||| || ||||||||||||||||||||||||||||| | |||| |||||    
T  33403184 ccactttgctttcgaacctcagaaggatcaacatcatagaaaacaggaataacatgtttt 33403243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 172
Target Start/End: Original strand, 33307059 - 33307198
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctc 132  Q
    |||||||||||||| ||  ||||||||||||||||||| |||||||| |||| | ||||||   ||   |||  ||||| |   ||||| || ||||||     
T  33307059 ccactttgctttcgaaccacagaaggatcaacatcataaaaaacaggaagaatatgttttctggatctctgaacgcatttacatatcttctctaattctt 33307158  T
Q  133 gcaagcaccaagttgaggaagcatagttttttgagaagac 172  Q
    ||| |||||| |||||||||||||||||  ||||||||||    
T  33307159 gcaggcaccatgttgaggaagcatagttccttgagaagac 33307198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 206
Target Start/End: Original strand, 33412491 - 33412664
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctc 132  Q
    ||||||||||| ||||| ||||||||||||| |||||| |||||||| |||||  |||||  |  |   |||   ||||||   |||||||| ||||||     
T  33412491 ccactttgcttccgcacctcagaaggatcaatatcataaaaaacaggaagaacgtgtttttcaggtccctgaacacattcacagatcttttctaattctt 33412590  T
Q  133 gcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgcacga 206  Q
    ||| |||||| |||||||||||||||||  |||| |||||  | | |||||| |||||  |||| |||||||||    
T  33412591 gcaggcaccatgttgaggaagcatagttccttgaaaagactgcgacgaaaacctgagatccttcgattgcacga 33412664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 190
Target Start/End: Complemental strand, 17438196 - 17438039
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctc 132  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||     |  |||  |||||||   |||||||| ||||||     
T  17438196 ccactttgctttcgcacctcagaaggatcaacatcatagaaaacaggaagaacatgttttcctggcacctgaacgcattcacatatcttttctaattctt 17438097  T
Q  133 gcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgaga 190  Q
     ||| ||||| |||||||||||||||| | ||||||| ||| |||  ||||| |||||    
T  17438096 ccaaacaccatgttgaggaagcatagtatcttgagaaaaccgcaacaaaaacctgaga 17438039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 719 - 876
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatag-ttgactgcattcaagaatcttttccaattct 131  Q
    ||||||||||||   || ||||||||||| ||| ||||||||| ||| ||||||  ||||| | ||   |||| ||||||||  |||||| || ||||||    
T  719 ccactttgcttttttacctcagaaggatcgacaccatagaaaataggaagaacatattttccagatcccttga-tgcattcacaaatcttctctaattct 817  T
Q  132 cgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgaga 190  Q
     ||| |||||| ||||| |||||||||||| |||| |||||  ||| |||||| |||||    
T  818 tgcaggcaccatgttgaagaagcatagtttcttgataagacagcaacgaaaacctgaga 876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 9480 - 9637
Alignment:
Q  33 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatag-ttgactgcattcaagaatcttttccaattct 131  Q
    ||||||||||||   || ||||||||||| ||| ||||||||| ||| ||||||  ||||| | ||   |||| ||||||||  |||||| || ||||||    
T  9480 ccactttgcttttttacctcagaaggatcgacaccatagaaaataggaagaacatattttccagatcccttga-tgcattcacaaatcttctctaattct 9578  T
Q  132 cgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgaga 190  Q
     ||| |||||| ||||| |||||||||||| |||| |||||  ||| |||||| |||||    
T  9579 tgcaggcaccatgttgaagaagcatagtttcttgataagacagcaacgaaaacctgaga 9637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 6473158 - 6473203
Alignment:
Q  124 ccaattctcgcaagcaccaagttgaggaagcatagttttttgagaa 169  Q
    |||||||| |||||||||| || || ||||||||||||||||||||    
T  6473158 ccaattcttgcaagcaccatgtggaagaagcatagttttttgagaa 6473203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 16466056 - 16466089
Alignment:
Q  48 acatcagaaggatcaacatcatagaaaacaggca 81  Q
    ||||||||||||||||| ||||||||||||||||    
T  16466056 acatcagaaggatcaacgtcatagaaaacaggca 16466089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 500125 - 500161
Alignment:
Q  42 tttcgcacatcagaaggatcaacatcatagaaaacag 78  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  500125 tttcgcacatcagacggagcaacatcatagaaaacag 500161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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