View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_2 (Length: 564)
Name: NF0243_low_2
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 164 - 561
Target Start/End: Original strand, 9911035 - 9911434
Alignment:
| Q |
164 |
cttaaaatattattaagaagaataaagcataaaattattct-------gtgtgatactcctatgttaattatttttatgtaaattgcttaactatgtgct |
256 |
Q |
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| T |
9911035 |
cttaaaatattattaataagaataaagcataaaattagtcttaactctgtgtgatactcctatgttaattatttttatgcaaattacataactatgtgct |
9911134 |
T |
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| Q |
257 |
tctttttggatttagtccctttataggtaaggagtccaacaaggaatgaggaactgcgtcttcccgttagaaatatgacaagaatcatgcaacgtgctct |
356 |
Q |
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| T |
9911135 |
tcgttttggatttagtccctttgcaggtaaggagtccaacaaaaaatgaggaattgcgtcttcctgttagaaatatgacaagaatcatgcaacgtgctct |
9911234 |
T |
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| Q |
357 |
tccatcatacgcaaaaatatctcaagatgctaaggcatcaacacaaaagtgtgtttctgaattcatgggcatcatcatcattgaggttgttgataaatgc |
456 |
Q |
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| T |
9911235 |
tccatcatacgcaaaaatatctcaagatgctaaggcatcaacacaaatgtgtgttt-tgaattcatgggtatcataatcattgaggttgttgataaatgc |
9911333 |
T |
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| Q |
457 |
aatgaagagagtcgaaattaaatatcattagtggtgaagatttaatt-tgggccatgggtaggttagggtttgaggactatgttggtcctctatctctgc |
555 |
Q |
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| T |
9911334 |
aatgaagagagtcgaaag-----atcattagtggtaaagatttaaatctgggccatgggtaggttagggtttgaggactatgttggtcctctatctcttc |
9911428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 291 - 561
Target Start/End: Original strand, 9921245 - 9921510
Alignment:
| Q |
291 |
tccaacaaggaatgaggaactgcgtcttcccgttagaaatatgacaagaatcatgcaacgtgctcttccatcatacgcaaaaatatctcaagatgctaag |
390 |
Q |
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| T |
9921245 |
tccaacaaaaaatgaggaattgtgtcttcccatccgaaatttgacaagaatcatgcggcgtgctcttccattgtacgcaaaaatatctcaagatgccaag |
9921344 |
T |
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| Q |
391 |
gcatcaacacaaaagtgtgtttctgaattcatgggcatcatcatcattgaggttgttgataaatgcaatgaagagagtcgaaattaaatatcattagtgg |
490 |
Q |
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| T |
9921345 |
gcaacaacacaattgtgtgtgtctgatttcatgggcatcatcaccactgaggctgttgagaaatgcaatgaagagagtcgaaag-----atcattagcgg |
9921439 |
T |
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| Q |
491 |
tgaagatttaatttgggccatgggtaggttagggtttgaggactatgttggtcctctatctctgctcctcc |
561 |
Q |
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| T |
9921440 |
tgaagatataatacgggccatgggtaggttagggtttgaggactatgttggtcctctatctcttctcctcc |
9921510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 548
Target Start/End: Complemental strand, 9634572 - 9634519
Alignment:
| Q |
495 |
gatttaatttgggccatgggtaggttagggtttgaggactatgttggtcctcta |
548 |
Q |
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| T |
9634572 |
gatttaatatgggcaatggataggttaggctttgatgactatgttggccctcta |
9634519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 9910974 - 9911002
Alignment:
| Q |
100 |
taatcaaaaggaagaaaagaaagtataca |
128 |
Q |
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| T |
9910974 |
taatcaaaaggaagaaaagaaagtataca |
9911002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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