View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_25 (Length: 428)
Name: NF0243_low_25
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 5113658 - 5113472
Alignment:
| Q |
29 |
aatacttgtctataacaaaaattaaataaattgattacctgcttccgatactaacatagaggctgcaaataatgtcgtcttcttcttcggagaaaccacc |
128 |
Q |
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| T |
5113658 |
aatacttgtctataacaaaaattaaataaattgattacctgcttccgatactaacatagaggctgcaaataatgtcgtcttcttcttcggagaaaccacc |
5113559 |
T |
|
| Q |
129 |
atgtttaatatttggtctaagataatttaaccatctaagacgacagcttttcccacatctcttaagtcctagatcacacacatccac |
215 |
Q |
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| T |
5113558 |
atgtttaatatttggtctaagataatttaaccatctaagacgacagcttttcccacatctcttaagtcctagatcacacacatccac |
5113472 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 284 - 416
Target Start/End: Complemental strand, 5113391 - 5113259
Alignment:
| Q |
284 |
gtattaattaaataattaatcattatgtgtggagaaaatagaagaaaaattatttgaaatgattgatgaattattccatgtaacatacctatcttctgag |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5113391 |
gtattaattaaataattaatcattatgtgtggagaaaatagaagaaaaattatttgaaatgattgatgaattattccatgtaacatacctatcttctgag |
5113292 |
T |
|
| Q |
384 |
gtagagcaatccaatttccaccagtaccatttt |
416 |
Q |
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| T |
5113291 |
gtagagcaatccaatttccaccagtaccatttt |
5113259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 62 - 185
Target Start/End: Original strand, 40254276 - 40254399
Alignment:
| Q |
62 |
attacctgcttccgatactaacatagaggctgcaaataatgtcgtcttcttcttcggagaaaccaccatgtttaatatttggtctaagataatttaacca |
161 |
Q |
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| T |
40254276 |
attacctgcttccaatattgacatagaggctgcaaataatgttatcttcttcttcggagaaactcccatgtttaaggttgggacgaagataatttagcca |
40254375 |
T |
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| Q |
162 |
tctaagacgacagcttttcccaca |
185 |
Q |
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|||||||||||| ||||| ||||| |
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| T |
40254376 |
tctaagacgacaactttttccaca |
40254399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 191
Target Start/End: Complemental strand, 21173906 - 21173779
Alignment:
| Q |
64 |
tacctgcttccgatactaacatagaggctgcaaataatgtcgtcttcttcttcggagaaaccaccatgtttaatatttggtctaagataatttaaccatc |
163 |
Q |
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||||||||||| ||| |||||||||| |||||||| || |||||| || || || ||| ||||||| ||||| ||||| |||||||| |||| ||||| |
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| T |
21173906 |
tacctgcttccaatattaacatagagactgcaaattattctgtcttcctcatctgaaaaatcaccatgcttaatgtttggcctaagatagtttagccatc |
21173807 |
T |
|
| Q |
164 |
taagacgacagcttttcccacatctctt |
191 |
Q |
| |
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| | | ||| ||||| ||||||||||| |
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| T |
21173806 |
tcaatctacaactttttccacatctctt |
21173779 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 191
Target Start/End: Complemental strand, 53557544 - 53557441
Alignment:
| Q |
88 |
aggctgcaaataatgtcgtcttcttcttcggagaaaccaccatgtttaatatttggtctaagataatttaaccatctaagacgacagcttttcccacatc |
187 |
Q |
| |
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||||||||||| |||| |||||||||||| | || ||||||||||| ||||| ||||| | ||||||||||| ||||| | || || || ||||||| |
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| T |
53557544 |
aggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatc |
53557445 |
T |
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| Q |
188 |
tctt |
191 |
Q |
| |
|
|||| |
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|
| T |
53557444 |
tctt |
53557441 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 4685784 - 4685663
Alignment:
| Q |
64 |
tacctgcttccgatactaacatagaggctgcaaataatgtcgtcttcttcttcggagaaaccaccatgtttaatatttggtctaagataatttaaccatc |
163 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| | ||| || | |||||| |||| ||| | |
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| T |
4685784 |
tacctgcttccaatactaatgtaaaggctgcaaataatgttatcttcttcttcggagaaaccaccatgtttgagattagggcgaagatagtttagccacc |
4685685 |
T |
|
| Q |
164 |
taagacgacagcttttcccaca |
185 |
Q |
| |
|
||||||||||| || ||||| |
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| T |
4685684 |
ggagacgacagctctttccaca |
4685663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 63 - 199
Target Start/End: Original strand, 47846765 - 47846901
Alignment:
| Q |
63 |
ttacctgcttccgatactaacatagaggctgcaaataatgtcgtcttcttcttcggagaaaccaccatgtttaatatttggtctaagataatttaaccat |
162 |
Q |
| |
|
|||||||||||| ||| ||||||| ||||||||||| |||| |||||||||||||| ||||||||| || || || || || | |||||| |||| ||| |
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| T |
47846765 |
ttacctgcttccaatagtaacataaaggctgcaaatgatgttgtcttcttcttcggtgaaaccaccgtgcttgatgttagggcgaagatagtttagccac |
47846864 |
T |
|
| Q |
163 |
ctaagacgacagcttttcccacatctcttaagtccta |
199 |
Q |
| |
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|| || ||||| ||||| ||||||| |||||| |||| |
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| T |
47846865 |
ctcagccgacaacttttgccacatcgcttaagaccta |
47846901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 9621995 - 9621943
Alignment:
| Q |
136 |
atatttggtctaagataatttaaccatctaagacgacagcttttcccacatct |
188 |
Q |
| |
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|||| ||||||||||||||| | ||||||||| | ||| |||||||||||||| |
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| T |
9621995 |
atatctggtctaagataattcatccatctaagtctacaacttttcccacatct |
9621943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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