View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0243_low_26 (Length: 424)
Name: NF0243_low_26
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_26 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 29007318 - 29007646
Alignment:
| Q |
1 |
acacccaaacgaccctcatctgcacaagaacaatcacaaggcgctttagcatgtgcatctggaggactaggaggagaatcactgtgtggtggactaggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29007318 |
acacccaaacgaccctcatctgcacaagaacaatcacaaggcgctttagcatgtgcatctggaggactaggaggagaatcactgtgtggtggactaggag |
29007417 |
T |
|
| Q |
101 |
gagaatcaccattcggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29007418 |
gagaatcaccattcggtggactaggaggagaatgagggcgtggtgcagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgac |
29007517 |
T |
|
| Q |
201 |
ttcaagtttgaggccttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29007518 |
ttcaagtttgaggccttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgt |
29007617 |
T |
|
| Q |
301 |
gtggaaatggcatttgctattgtacatgt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29007618 |
gtggaaatggcatttgctattgtacatgt |
29007646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 115 - 329
Target Start/End: Complemental strand, 21409776 - 21409573
Alignment:
| Q |
115 |
ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc |
214 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
21409776 |
ggtggactaggaggagaatgagggcatggtggagaaataggtggagg-----------tgttgttggactgagcttgaactttgactttgagtttcaggc |
21409688 |
T |
|
| Q |
215 |
cttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatt |
314 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| | ||||| ||| ||||||||||| |
|
|
| T |
21409687 |
cttgttggcaatggcccattctgccacaaacgaagtagcgttttcctgattcaatgacgtggatcactgtttctcctgagttgtatgtcgaaatggcatt |
21409588 |
T |
|
| Q |
315 |
tgctattgtacatgt |
329 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
21409587 |
tgctattgtacatgt |
21409573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 21465563 - 21465429
Alignment:
| Q |
115 |
ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc |
214 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
21465563 |
ggtggactaggaggagaatgagggcatggtggagaaataggtggaggagaagttccagtgttgttggactgagcttgaactttgactttgagtttcaggc |
21465464 |
T |
|
| Q |
215 |
cttgttgacaatgacccattctgccacaaacgaag |
249 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
21465463 |
cttgttggcaatggcccattctgccacaaacgaag |
21465429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 21461926 - 21461862
Alignment:
| Q |
265 |
tcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgt |
329 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| ||| |||| ||| ||||||||||||||||| |
|
|
| T |
21461926 |
tcagtgaggtggatcactatttctccagagttgtatgtcgaaacggcgtttgctattgtacatgt |
21461862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1432 times since January 2019
Visitors: 2391