View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_28 (Length: 419)
Name: NF0243_low_28
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 30 - 407
Target Start/End: Original strand, 11236711 - 11237082
Alignment:
| Q |
30 |
gggattgtgtgcataaccagactcagaaatggcgcgaagtgaagacgccgacgccgacgccgctttgtctgatccacttacggaggaaacaaccgccacc |
129 |
Q |
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| T |
11236711 |
gggatagtgtgcataaccagactcagaaatggcgccaagtgaagacg------ccgacgctgctttatctgatccacttacggaggaaacaaccgccacc |
11236804 |
T |
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| Q |
130 |
aagcggcagcgtttgaactcctccaccgaaaccctgtcgtccctaacctcaccatcttcatcttcctcatcaaccattccaactcttccattcgagatcg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11236805 |
aagcggcagcgtttgaactcctccaccgaaaccctgtcgtccctaacctcaccatcttcatcttcctcatcaaccattccgactcttccattcgagatcg |
11236904 |
T |
|
| Q |
230 |
tagcggagattctctccagacttccggtcaaattcctcatgcaactccaatccgtctgtaagtcctggaaatctctcatctccgatcccaaattcatcaa |
329 |
Q |
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| T |
11236905 |
tcgcggagattctctccaggctgccagtcaaatacctcatgcaactccaatccgtctgtaagtcctggaaatctctcatctccgatcccaaattcatcaa |
11237004 |
T |
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| Q |
330 |
aaaacaccttcacttgtccaccacgcgcctccatctcgtcttagccttcgccaactcctctcgcaaattcgccctctc |
407 |
Q |
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| T |
11237005 |
aaaacaccttcacgtgtccaccacgcgcctccatctcgtcttagccttcgccaattcctctcgcaaattcgccctctc |
11237082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 206 - 355
Target Start/End: Complemental strand, 7169553 - 7169404
Alignment:
| Q |
206 |
ttccaactcttccattcgagatcgtagcggagattctctccagacttccggtcaaattcctcatgcaactccaatccgtctgtaagtcctggaaatctct |
305 |
Q |
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| T |
7169553 |
ttcccactcttccattcgagattgtggcggaaattctctccaggcttccagtcaagtttctcatgcaactccaatccgtctgtaagtcctggaaatctct |
7169454 |
T |
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| Q |
306 |
catctccgatcccaaattcatcaaaaaacaccttcacttgtccaccacgc |
355 |
Q |
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| T |
7169453 |
tatctccgattcaaaattcgctaagaatcaccttcgcttgtcaaccacgc |
7169404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 358
Target Start/End: Complemental strand, 7157051 - 7156899
Alignment:
| Q |
206 |
ttccaactcttccattcgagatcgtagcggagattctctccagacttccggtcaaattcctcatgcaactccaatccgtctgtaagtcctggaaatctct |
305 |
Q |
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| T |
7157051 |
ttccgactcttccattcgatctcgttgtagagattctctcccggcttcccgtgaagtctctcatgcaactccaatgcgtctgtaagtaatggaaatctct |
7156952 |
T |
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| Q |
306 |
catctccgatcccaaattcatcaaaaaacaccttcacttgtccaccacgcgcc |
358 |
Q |
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| T |
7156951 |
catcttcgatcacaaattcgccaaaaagcaccttcatgtgtcaaccacgcgcc |
7156899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 7161579 - 7161516
Alignment:
| Q |
238 |
attctctccagacttccggtcaaattcctcatgcaactccaatccgtctgtaagtcctggaaat |
301 |
Q |
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| T |
7161579 |
attctttccaggcttccagtcaaatccctcatgcaactcaaatcggtctgcaaatcctggaaat |
7161516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 24722589 - 24722663
Alignment:
| Q |
250 |
cttccggtcaaattcctcatgcaactccaatccgtctgtaagtcctggaaatctctcatctccgatcccaaattc |
324 |
Q |
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| T |
24722589 |
cttccggtcaagtccctcatgcaattcaaatgtgtctgcaagtcctggaaatcattcatctcccatcctaaattc |
24722663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 43991292 - 43991338
Alignment:
| Q |
265 |
ctcatgcaactccaatccgtctgtaagtcctggaaatctctcatctc |
311 |
Q |
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| T |
43991292 |
ctcatgcaactccaatgcatctgcaagtcctggaaatctcttatctc |
43991338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 2679242 - 2679178
Alignment:
| Q |
259 |
aaattcctcatgcaactccaatccgtctgtaagtcctggaaatctctcatctccgatcccaaatt |
323 |
Q |
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| T |
2679242 |
aaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatt |
2679178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 2687149 - 2687085
Alignment:
| Q |
259 |
aaattcctcatgcaactccaatccgtctgtaagtcctggaaatctctcatctccgatcccaaatt |
323 |
Q |
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| T |
2687149 |
aaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatt |
2687085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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