View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0243_low_30 (Length: 408)
Name: NF0243_low_30
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 308
Target Start/End: Complemental strand, 44834430 - 44834130
Alignment:
| Q |
7 |
ggccagcaaggtttagagttggagtttggccattgccaaaagtggatagaaaagctatgtttacaaattggtagttgtttgtgttgcaagcatctgctaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44834430 |
ggccagcaaggtttagagttggagtttggccattgccaaaagtggatagaaaagctatgtttacaaattggtagttgtttgtgttgcaagcatctgctaa |
44834331 |
T |
|
| Q |
107 |
ggaaccttcgttgccgttttggccccaatagacagcaattcctgcagcatgagaggatttgaatagggaaatgaggaaaagagggaataacaggattgaa |
206 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44834330 |
ggaaccttcgttgccgttttgaccccaatagacagcaattcctgcagcatgagaggatttgaatagggaaatgaggaaaagagggaataacaggattgaa |
44834231 |
T |
|
| Q |
207 |
acttgtttgaaggatgccatgtttgannnnnnnnnnnaaggttgttggtttggttgtgttgaaaatgttgatgggttcatagcattatataggtgttgga |
306 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44834230 |
acttgtttgaaggatgccatgtttga-ttgtttttttaaggttgttggtttggttgtgttgaaaatgttgatgggttcatagcattatataggtgttgga |
44834132 |
T |
|
| Q |
307 |
gg |
308 |
Q |
| |
|
|| |
|
|
| T |
44834131 |
gg |
44834130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 44817073 - 44816857
Alignment:
| Q |
7 |
ggccagcaaggtttagagttggagtttggccattgccaaaagtggatagaaaagctatgtttacaaattggtagttgtttgtgttgcaagcatctgctaa |
106 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44817073 |
ggcctgcaaggtttagagttggattttggccattgccaaaagtggatagaaaagctatgtttacaaatttgtagttgtttgtgttgcaagcatctgctaa |
44816974 |
T |
|
| Q |
107 |
ggaaccttcgttgccgttttggccccaatagacagcaattcctgcagcatgagaggatttgaatagggaaatgaggaaaagagggaataacaggattgaa |
206 |
Q |
| |
|
||||||||| || || ||||||||||||||||| || ||||||||||| |||||||||| || |||||||||| ||| || |||||||| | || |||| |
|
|
| T |
44816973 |
ggaaccttcatttccattttggccccaatagactccatttcctgcagcacgagaggatttaaagagggaaatgaagaacagtgggaataatatgactgaa |
44816874 |
T |
|
| Q |
207 |
acttgtttgaaggatgc |
223 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
44816873 |
acttttttgaaggatgc |
44816857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 23396645 - 23396743
Alignment:
| Q |
31 |
tttggccattgccaaaagtggatagaaaagctatgtttacaaattggtagttgtttgtgttgcaagcatctgctaaggaaccttcgttgccgttttggcc |
130 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| | |||| ||||||||||| ||||| || || |||||||| |
|
|
| T |
23396645 |
tttggccattgccaaa-gtggatagaaaagctatgtttataaattggtagttgtttgtgctacaagtctctgctaaggagccttcatttccattttggcc |
23396743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2671 times since January 2019
Visitors: 2402