View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0243_low_33 (Length: 382)

Name: NF0243_low_33
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0243_low_33
NF0243_low_33
[»] chr3 (2 HSPs)
chr3 (131-288)||(16723800-16723966)
chr3 (132-180)||(18114352-18114400)
[»] chr1 (2 HSPs)
chr1 (15-115)||(26413627-26413727)
chr1 (131-294)||(19352324-19352496)
[»] chr6 (2 HSPs)
chr6 (163-282)||(3180788-3180907)
chr6 (61-94)||(2765218-2765251)
[»] chr7 (4 HSPs)
chr7 (131-224)||(10695982-10696075)
chr7 (179-225)||(14626263-14626309)
chr7 (174-288)||(6241797-6241920)
chr7 (200-262)||(442382-442444)
[»] chr2 (3 HSPs)
chr2 (141-226)||(29849052-29849137)
chr2 (170-288)||(43724985-43725102)
chr2 (250-288)||(32964726-32964764)
[»] chr4 (2 HSPs)
chr4 (132-223)||(32205345-32205436)
chr4 (254-288)||(35255921-35255955)
[»] scaffold2079 (1 HSPs)
scaffold2079 (250-288)||(66-104)
[»] chr5 (2 HSPs)
chr5 (179-225)||(17703191-17703237)
chr5 (254-294)||(41490874-41490914)
[»] chr8 (1 HSPs)
chr8 (196-244)||(2152785-2152833)


Alignment Details
Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 131 - 288
Target Start/End: Original strand, 16723800 - 16723966
Alignment:
Q  131 ccatagtcacataattctctcaacatgctttgaactgtgaattgatacttgtgtaccagttcgtgctacttttgtgaattggttcagacaaattcctctg 230  Q
    |||||||||||||||||||| ||||||     ||||| |||||| |||||||||||| ||||||| |||||||||||||||||||  ||||||||| |||    
T  16723800 ccatagtcacataattctcttaacatgaagcaaactgcgaattggtacttgtgtaccggttcgtggtacttttgtgaattggttcgcacaaattcccctg 16723899  T
Q  231 taattcatggaaactaacaaac---------cgagacaagtgagtgaagatcgaagaaagatgaaga 288  Q
    ||| ||||||||| | ||||||         ||||||||||||||||| || ||||||| |||||||    
T  16723900 taactcatggaaattgacaaactggataaatcgagacaagtgagtgaatattgaagaaacatgaaga 16723966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 18114352 - 18114400
Alignment:
Q  132 catagtcacataattctctcaacatgctttgaactgtgaattgatactt 180  Q
    |||||||||||||||||||  | |||||  |||||||||||||||||||    
T  18114352 catagtcacataattctcttgatatgctgcgaactgtgaattgatactt 18114400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 26413727 - 26413627
Alignment:
Q  15 gacaatccgcataaaacttctaactttttcaggcacctctagtctccaaattcttttccaaatatcatttctttctattggatcattgttacccaataga 114  Q
    |||||||| || ||||||||||||| ||||| ||||||| |||||| |||||||||||| ||||||||||||||||||||  |||| ||||| |||||||    
T  26413727 gacaatccacacaaaacttctaactctttcaagcacctccagtctctaaattcttttccgaatatcatttctttctattgcttcatggttactcaataga 26413628  T
Q  115 g 115  Q
    |    
T  26413627 g 26413627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 294
Target Start/End: Complemental strand, 19352496 - 19352324
Alignment:
Q  131 ccatagtcacataattctctcaacatgctttgaactgtgaattgatacttgtgtaccagttcgtgctacttttgtgaattggttcagacaaattcc-tct 229  Q
    ||||||||||||||||||||  |||||||  |||  ||||||| || ||||||||   ||||||| |||||| | ||||| | |   ||||||||| | |    
T  19352496 ccatagtcacataattctcttgacatgctgcgaatcgtgaatttatgcttgtgtattggttcgtggtactttggcgaattagcttgcacaaattcccttt 19352397  T
Q  230 gtaattcatggaaactaacaaa--------ccgagacaagtgagtgaagatcgaagaaagatgaagaggttga 294  Q
    ||||||| ||||||||||||||        ||||||||||||||| || |||||||||||| ||||| |||||    
T  19352396 gtaattcgtggaaactaacaaatcgacaaaccgagacaagtgagtaaatatcgaagaaagaggaagatgttga 19352324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 3180907 - 3180788
Alignment:
Q  163 aactgtgaattgatacttgtgtaccagttcgtgctacttttgtgaattggttcagacaaattcctctgtaattcatggaaactaacaaaccgagacaagt 262  Q
    |||||||||||| |||||||||||||| | ||| ||| |||| ||||||||| | |||||||| | ||||||||||||||||   | || |||||||| |    
T  3180907 aactgtgaattggtacttgtgtaccagcttgtggtacctttgcgaattggtttacacaaattcttttgtaattcatggaaaccggccaatcgagacaaat 3180808  T
Q  263 gagtgaagatcgaagaaaga 282  Q
    ||||||||||||||||||||    
T  3180807 gagtgaagatcgaagaaaga 3180788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 94
Target Start/End: Complemental strand, 2765251 - 2765218
Alignment:
Q  61 caaattcttttccaaatatcatttctttctattg 94  Q
    ||||||||||||||||||||||||||||||||||    
T  2765251 caaattcttttccaaatatcatttctttctattg 2765218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 10695982 - 10696075
Alignment:
Q  131 ccatagtcacataattctctcaacatgctttgaactgtgaattgatacttgtgtaccagttcgtgctacttttgtgaattggttcagacaaatt 224  Q
    |||||||||||||||||||| |||||| |  |||||| |||||| ||||| |||||| ||||||  |||||||| ||||||||||  |||||||    
T  10695982 ccatagtcacataattctcttaacatgatgcgaactgcgaattggtacttatgtaccggttcgtagtacttttgcgaattggttcgcacaaatt 10696075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 14626309 - 14626263
Alignment:
Q  179 ttgtgtaccagttcgtgctacttttgtgaattggttcagacaaattc 225  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  14626309 ttgtgtaccagttcgtggtacttttgtgaattggttcacacaaattc 14626263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 288
Target Start/End: Original strand, 6241797 - 6241920
Alignment:
Q  174 gatacttgtgtaccagttcgtgctacttttgtgaattggttcagacaaattcctctgtaattcatggaaact---------aacaaaccgagacaagtga 264  Q
    ||||||||| |||| |||| || ||||||||||||||| |||  |||| ||||  |||| || |||||||||         ||| |||||| |||||||     
T  6241797 gatacttgtctaccggttcatggtacttttgtgaattgattcgcacaagttcccttgtattttatggaaactgaggaactgaacgaaccgatacaagtgg 6241896  T
Q  265 gtgaagatcgaagaaagatgaaga 288  Q
    ||||||||||||||||||||||||    
T  6241897 gtgaagatcgaagaaagatgaaga 6241920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 442382 - 442444
Alignment:
Q  200 ttttgtgaattggttcagacaaattcctctgtaattcatggaaactaacaaaccgagacaagt 262  Q
    ||||||||||||||||  ||||||| | || ||||||||||||||  || |||||||||||||    
T  442382 ttttgtgaattggttcttacaaatttccctctaattcatggaaaccgacgaaccgagacaagt 442444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 29849137 - 29849052
Alignment:
Q  141 ataattctctcaacatgctttgaactgtgaattgatacttgtgtaccagttcgtgctacttttgtgaattggttcagacaaattcc 226  Q
    ||||||||||  ||||| |  |||||| |||||| |||||| ||||||||||||| |||||||| ||||||||||  |||||||||    
T  29849137 ataattctcttgacatgttgcgaactgcgaattggtacttgcgtaccagttcgtggtacttttgcgaattggttcgcacaaattcc 29849052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 288
Target Start/End: Complemental strand, 43725102 - 43724985
Alignment:
Q  170 aattgatacttgtgtaccagttcgtgctacttttgtgaattggttcagacaaattcctctgtaattcatggaaactaacaaaccgagacaagtgagtgaa 269  Q
    ||||| |||||| ||||||||| ||| |||||| | ||| || |||| ||||| ||   ||||||||||| ||||| ||||||||||||||  | || ||    
T  43725102 aattgttacttgcgtaccagtttgtggtactttcgcgaaatgattcatacaaagtctcttgtaattcatgaaaactgacaaaccgagacaaacg-gtaaa 43725004  T
Q  270 gatcgaagaaagatgaaga 288  Q
    |||| ||||||||||||||    
T  43725003 gatcaaagaaagatgaaga 43724985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 32964764 - 32964726
Alignment:
Q  250 aaccgagacaagtgagtgaagatcgaagaaagatgaaga 288  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  32964764 aaccgagacaagtgagtgaaaatcgaataaagatgaaga 32964726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 223
Target Start/End: Complemental strand, 32205436 - 32205345
Alignment:
Q  132 catagtcacataattctctcaacatgctttgaactgtgaattgatacttgtgtaccagttcgtgctacttttgtgaattggttcagacaaat 223  Q
    ||||||||||||||||||| |||||  | ||||  | |||||| ||||||||||||  || | | |||||||||||||||||| | ||||||    
T  32205436 catagtcacataattctcttaacatattgtgaatcgcgaattggtacttgtgtaccgctttgaggtacttttgtgaattggtttacacaaat 32205345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 35255955 - 35255921
Alignment:
Q  254 gagacaagtgagtgaagatcgaagaaagatgaaga 288  Q
    ||||||||||||||||||||||||||||| |||||    
T  35255955 gagacaagtgagtgaagatcgaagaaagaggaaga 35255921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2079 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 66 - 104
Alignment:
Q  250 aaccgagacaagtgagtgaagatcgaagaaagatgaaga 288  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  66 aaccgatacaagtgggtgaagatcgaagaaagatgaaga 104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 17703191 - 17703237
Alignment:
Q  179 ttgtgtaccagttcgtgctacttttgtgaattggttcagacaaattc 225  Q
    ||||||||| ||||||| |||||||||||||||||||  ||||||||    
T  17703191 ttgtgtaccggttcgtggtacttttgtgaattggttcgcacaaattc 17703237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 41490914 - 41490874
Alignment:
Q  254 gagacaagtgagtgaagatcgaagaaagatgaagaggttga 294  Q
    ||||||| ||||||||||||||||||| | |||||||||||    
T  41490914 gagacaaatgagtgaagatcgaagaaataagaagaggttga 41490874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 2152833 - 2152785
Alignment:
Q  196 ctacttttgtgaattggttcagacaaattcctctgtaattcatggaaac 244  Q
    |||| |||||||||||||||| ||||||| |||| ||||||||| ||||    
T  2152833 ctacctttgtgaattggttcacacaaatttctctttaattcatgcaaac 2152785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1525 times since January 2019
Visitors: 2391