View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0243_low_34 (Length: 373)
Name: NF0243_low_34
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 344
Target Start/End: Original strand, 13853689 - 13854017
Alignment:
| Q |
16 |
attaacaaaacaaccaattatgtcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacaggtgcaaaattacca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13853689 |
attaacaaaacaaccaattatgtcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacaggtgcaaaattacca |
13853788 |
T |
|
| Q |
116 |
gcaagccaatgatgacaaagtgaagaatcataaaagaatttcacaacaagcttctccaacaagtcaacagcttttgaactgaaacattttcttggttttg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13853789 |
gcaagccaatgatgacaaagtgaagaatcataaaagaatttcacaacaagcttttccaacaagtcaacagcttttgaactgaaacattttcttggttttg |
13853888 |
T |
|
| Q |
216 |
gttccactttcacaatccctcgtctaagtgaaaatgatttgatctttacacaaattggtttgtgagaatggatagtagtagtgctaaacttgaagacttg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13853889 |
gttccactttcacaatccctcgtctaagtgaaaatgatttgatctttacacaaatgggtttgtgagaatggatagtagtagtgctaaacttgaagacttg |
13853988 |
T |
|
| Q |
316 |
ggtaccacggtaacttctcaaggtgttta |
344 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
13853989 |
gctaccacggtaacttctcaaggtgttta |
13854017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 38 - 344
Target Start/End: Original strand, 13895030 - 13895336
Alignment:
| Q |
38 |
tcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacaggtgcaaaattaccagcaagccaatgatgacaaagtg |
137 |
Q |
| |
|
||||| |||||||||| || ||||||||||| |||||| |||||||||||||||| | |||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
13895030 |
tcacttaccggaaggtagcctttaacaggaaggtccttagtaggaggtgtctcatccttaacaggtgcaaaattaccggcaagccaatgatgaggaagtg |
13895129 |
T |
|
| Q |
138 |
aagaatcataaaagaatttcacaacaagcttctccaacaagtcaacagcttttgaactgaaacattttcttggttttggttccactttcacaatccctcg |
237 |
Q |
| |
|
| ||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13895130 |
atgaatcataaaacaacttcaccacaagcttctccaacaaatcaacagcttttgaactgaaacattttcttggttttggttccactttcacaatccctcg |
13895229 |
T |
|
| Q |
238 |
tctaagtgaaaatgatttgatctttacacaaattggtttgtgagaatggatagtagtagtgctaaacttgaagacttgggtaccacggtaacttctcaag |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13895230 |
tctaagtgaaaatgatttgatctttacacaaatgggtttgtgagaatggatagtagcagtgctaaacttgaagacttggctaccacggtaacttctcaag |
13895329 |
T |
|
| Q |
338 |
gtgttta |
344 |
Q |
| |
|
||||||| |
|
|
| T |
13895330 |
gtgttta |
13895336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 344
Target Start/End: Original strand, 13872539 - 13872868
Alignment:
| Q |
15 |
tattaacaaaacaaccaattatgtcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacaggtgcaaaattacc |
114 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
13872539 |
tattatcaaaacaaccacttatgtcactaaccggaaggtgtcctttaacaggaagatcctttgtaggaggtgtctcatctttgacaggagcaaaattacc |
13872638 |
T |
|
| Q |
115 |
agcaagccaatgatgacaaagtgaagaatcataaaagaatttcacaacaagcttctccaacaagtcaacagcttttgaactgaaacattttcttggtttt |
214 |
Q |
| |
|
||||| ||| |||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13872639 |
agcaatccagtgatgagaaagtgaagaatcataaaagaacttcacaacaagattctccaacaaatcaacagcttttgaagtgaaacattttcttggtttt |
13872738 |
T |
|
| Q |
215 |
ggttccactttcacaatccctcgtctaagtgaaaatgatttgatctttacacaaattggtttgtgagaatggatagtagtagtgctaaacttgaagactt |
314 |
Q |
| |
|
|||||||||||||||||||||| || | |||| |||||||||||||||||||| | || |||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
13872739 |
ggttccactttcacaatccctcctccgattgaacatgatttgatctttacacaagtgggcttgtgagaatggatagtagtagtgctgatgttgaacactt |
13872838 |
T |
|
| Q |
315 |
gggtaccacggtaacttctcaaggtgttta |
344 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
|
|
| T |
13872839 |
gggtaccacggtaacttctcaaggagttta |
13872868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 13902778 - 13902993
Alignment:
| Q |
22 |
aaaacaaccaatta-tgtcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacaggtgcaaaattaccagcaag |
120 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| |
|
|
| T |
13902778 |
aaaacaaccaattactatcactaaccggaaggtgtcctttaataggaagatccttaataggaggtgtttcatccttaacaggtgcaaaattaccagcaag |
13902877 |
T |
|
| Q |
121 |
ccaatgatgacaaagtgaagaatcataaaagaatttcacaacaagcttctccaacaagtcaacagcttttgaactgaaacattttcttggttttggttcc |
220 |
Q |
| |
|
|||||||||| ||| |||||||||||||| || ||||||| || ||||||||| || ||||||||||||||| |||||| || || |||||||||||| |
|
|
| T |
13902878 |
ccaatgatgaggaagcgaagaatcataaaacaacttcacaataatcttctccaataaatcaacagcttttgaagtgaaaccattactgggttttggttcc |
13902977 |
T |
|
| Q |
221 |
actttcacaatccctc |
236 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
13902978 |
actttcacaattcctc |
13902993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2164 times since January 2019
Visitors: 2399