View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0243_low_35 (Length: 371)

Name: NF0243_low_35
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0243_low_35
NF0243_low_35
[»] chr8 (16 HSPs)
chr8 (8-161)||(22324593-22324746)
chr8 (8-162)||(21525354-21525508)
chr8 (8-162)||(35806790-35806944)
chr8 (8-163)||(33934347-33934502)
chr8 (8-162)||(26021391-26021546)
chr8 (8-158)||(42013872-42014022)
chr8 (8-162)||(42072424-42072578)
chr8 (31-162)||(19334778-19334910)
chr8 (61-140)||(24065291-24065370)
chr8 (8-140)||(21488084-21488216)
chr8 (30-140)||(43282851-43282962)
chr8 (19-92)||(16523172-16523245)
chr8 (18-161)||(10112042-10112187)
chr8 (31-158)||(16818974-16819105)
chr8 (109-140)||(34697469-34697500)
chr8 (32-80)||(16591377-16591425)
[»] chr3 (24 HSPs)
chr3 (8-161)||(21853194-21853347)
chr3 (8-161)||(13856096-13856249)
chr3 (6-162)||(5391453-5391609)
chr3 (8-162)||(8950482-8950636)
chr3 (8-162)||(40845895-40846049)
chr3 (1-162)||(32352843-32353004)
chr3 (19-162)||(44994957-44995101)
chr3 (43-164)||(23467507-23467628)
chr3 (8-161)||(20382514-20382668)
chr3 (14-161)||(3178699-3178847)
chr3 (7-161)||(43347313-43347468)
chr3 (17-161)||(19649359-19649506)
chr3 (18-162)||(10839368-10839514)
chr3 (31-152)||(22845363-22845484)
chr3 (31-161)||(1781757-1781889)
chr3 (43-157)||(54546904-54547019)
chr3 (43-162)||(33103738-33103858)
chr3 (43-160)||(8926762-8926881)
chr3 (8-161)||(36539627-36539782)
chr3 (44-138)||(46685797-46685891)
chr3 (43-162)||(48206848-48206968)
chr3 (43-162)||(6280372-6280492)
chr3 (43-136)||(51336231-51336324)
chr3 (20-80)||(27642738-27642798)
[»] chr7 (16 HSPs)
chr7 (8-162)||(44164721-44164875)
chr7 (8-161)||(34707113-34707266)
chr7 (6-162)||(29555915-29556071)
chr7 (18-163)||(24320427-24320572)
chr7 (8-162)||(10576669-10576823)
chr7 (8-162)||(29238121-29238275)
chr7 (8-150)||(34259526-34259668)
chr7 (23-162)||(32876523-32876662)
chr7 (8-143)||(29981091-29981226)
chr7 (18-161)||(33057645-33057789)
chr7 (18-161)||(17303102-17303248)
chr7 (43-161)||(19334573-19334693)
chr7 (18-161)||(10334173-10334318)
chr7 (43-80)||(15017851-15017888)
chr7 (109-161)||(26284457-26284510)
chr7 (43-80)||(43342488-43342525)
[»] chr4 (28 HSPs)
chr4 (8-162)||(49284353-49284507)
chr4 (8-162)||(1535767-1535921)
chr4 (18-162)||(25954746-25954890)
chr4 (6-162)||(35018932-35019087)
chr4 (18-163)||(34240988-34241133)
chr4 (9-162)||(37801243-37801396)
chr4 (43-162)||(52632514-52632633)
chr4 (6-162)||(36012162-36012317)
chr4 (43-158)||(46583554-46583669)
chr4 (8-161)||(17888528-17888683)
chr4 (24-135)||(16338207-16338318)
chr4 (97-161)||(16338311-16338375)
chr4 (8-161)||(31377385-31377539)
chr4 (8-140)||(20818584-20818717)
chr4 (31-131)||(10094394-10094495)
chr4 (8-85)||(36851365-36851442)
chr4 (35-156)||(9742538-9742661)
chr4 (22-163)||(46473987-46474130)
chr4 (18-162)||(50328790-50328936)
chr4 (8-162)||(12792209-12792365)
chr4 (18-161)||(11054448-11054595)
chr4 (65-161)||(322584-322682)
chr4 (32-105)||(47084065-47084138)
chr4 (30-161)||(54090176-54090308)
chr4 (43-140)||(19124751-19124849)
chr4 (32-105)||(33982057-33982130)
chr4 (35-161)||(35322709-35322837)
chr4 (8-40)||(46583529-46583561)
[»] chr2 (19 HSPs)
chr2 (8-161)||(29846439-29846592)
chr2 (8-162)||(42769736-42769890)
chr2 (9-162)||(14186417-14186570)
chr2 (11-162)||(14942025-14942176)
chr2 (8-162)||(40277266-40277420)
chr2 (31-162)||(19181544-19181675)
chr2 (235-337)||(38491723-38491823)
chr2 (54-162)||(1387312-1387421)
chr2 (35-161)||(40780050-40780179)
chr2 (43-161)||(6318471-6318592)
chr2 (66-162)||(3597903-3597999)
chr2 (31-162)||(14539705-14539838)
chr2 (8-161)||(3956567-3956722)
chr2 (32-163)||(33009665-33009799)
chr2 (9-69)||(3597869-3597929)
chr2 (43-137)||(43139766-43139862)
chr2 (43-162)||(41674719-41674841)
chr2 (66-161)||(23685406-23685503)
chr2 (43-161)||(28321716-28321836)
[»] chr6 (16 HSPs)
chr6 (6-162)||(24694627-24694783)
chr6 (8-161)||(9231832-9231985)
chr6 (26-162)||(14309794-14309930)
chr6 (10-163)||(13627535-13627688)
chr6 (10-132)||(1727913-1728035)
chr6 (109-162)||(11084606-11084659)
chr6 (35-140)||(34103703-34103808)
chr6 (19-161)||(28750639-28750783)
chr6 (45-162)||(27863694-27863812)
chr6 (64-161)||(11279536-11279634)
chr6 (21-156)||(13103109-13103246)
chr6 (21-92)||(24497565-24497636)
chr6 (18-84)||(11084664-11084730)
chr6 (109-158)||(24500780-24500830)
chr6 (64-140)||(11212689-11212765)
chr6 (16-60)||(34088788-34088832)
[»] chr5 (22 HSPs)
chr5 (8-161)||(16618548-16618701)
chr5 (8-161)||(38397595-38397748)
chr5 (8-163)||(6257388-6257543)
chr5 (8-162)||(23218481-23218635)
chr5 (8-162)||(37169011-37169165)
chr5 (8-162)||(39862465-39862619)
chr5 (8-158)||(15631613-15631764)
chr5 (10-161)||(8456943-8457096)
chr5 (9-162)||(36769053-36769207)
chr5 (28-158)||(614390-614522)
chr5 (9-161)||(10081140-10081296)
chr5 (11-161)||(25560309-25560460)
chr5 (33-161)||(42119617-42119747)
chr5 (31-140)||(6174762-6174873)
chr5 (18-137)||(33271258-33271377)
chr5 (55-140)||(9738008-9738094)
chr5 (32-162)||(27916133-27916266)
chr5 (42-161)||(11856290-11856411)
chr5 (31-140)||(29790220-29790328)
chr5 (11-138)||(29491395-29491521)
chr5 (18-132)||(10115185-10115300)
chr5 (31-140)||(3341121-3341230)
[»] chr1 (20 HSPs)
chr1 (8-158)||(5974988-5975138)
chr1 (8-162)||(49902464-49902618)
chr1 (8-162)||(3346782-3346936)
chr1 (8-162)||(10155994-10156148)
chr1 (8-162)||(48392384-48392538)
chr1 (8-162)||(42517272-42517430)
chr1 (8-162)||(7742757-7742911)
chr1 (43-161)||(23908282-23908400)
chr1 (8-162)||(47022698-47022852)
chr1 (43-162)||(29149561-29149680)
chr1 (8-158)||(38859849-38860001)
chr1 (18-161)||(10907636-10907781)
chr1 (31-105)||(42456625-42456699)
chr1 (46-162)||(44107404-44107522)
chr1 (43-162)||(26835332-26835453)
chr1 (37-140)||(13131914-13132017)
chr1 (43-140)||(30745361-30745459)
chr1 (43-140)||(30766812-30766910)
chr1 (65-133)||(5558334-5558402)
chr1 (109-139)||(8430521-8430551)
[»] scaffold0079 (2 HSPs)
scaffold0079 (24-135)||(54542-54653)
scaffold0079 (97-161)||(54485-54549)
[»] scaffold0086 (1 HSPs)
scaffold0086 (43-80)||(20844-20881)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 22324746 - 22324593
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  22324746 gggcactcgcccgggctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 22324647  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 161  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22324646 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 22324593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 21525508 - 21525354
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| | |||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  21525508 gggcactcgccagggctccgggtcaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttac 21525409  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21525408 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 21525354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 35806944 - 35806790
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| ||||||||||  ||||||||||||||||  |||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  35806944 gggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggcaatttctttac 35806845  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35806844 attttttattatttgcttgcaatttcttatgtacaccctataaatgtgttgcaaa 35806790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 33934347 - 33934502
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| ||||||||| || ||||||||||  |||||||| ||||||||||||||||||||||||||||| |||| |||||| |  ||||| |||      
T  33934347 gggcactcgcccgggctccaggccaaattttttgcaatttcttttgtaaattcctatgaatttcttatataaacccctataaattgggcaatttttttat 33934446  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 163  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33934447 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 33934502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 26021546 - 26021391
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||| | |||||||||| | ||||||||||  |||||||| ||||||| ||||||||||||||||||||| |||| |||||| | |||||||||| |    
T  26021546 gggcactagcccgggctccgtgccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaacccctataaattgggtaatttctttac 26021447  T
Q  108 ctttttt-attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26021446 atttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 26021391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 42014022 - 42013872
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||| ||||||| | |||| ||||||||||  |||||||||||||||| |||||||||||||||||||||  ||| |||||| |  |||||||||      
T  42014022 gggcacttgtccgggtttcgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaatttctttat 42013923  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 158  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42013922 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 42013872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 42072578 - 42072424
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| ||| ||||||  |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  42072578 gggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttac 42072479  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     ||||||||||||||||||||||||||||||||  |  |||||||||||||||||    
T  42072478 attttttattatttgcttgcaatttcttatgtaaacaatataaatgtgttgcaaa 42072424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 31 - 162
Target Start/End: Complemental strand, 19334910 - 19334778
Alignment:
Q  31 caaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctt-ttttattatttgcttgcaa 129  Q
    ||||||||||  |||||||| | ||||||| ||||||||| ||||||||| | || |||||| |  |||||||||   || ||||||||||||||| |||    
T  19334910 caaattttttgcaatttcttatataaattcttatgaattttttatataaacctctataaattagacaatttctttaaattgttttattatttgcttacaa 19334811  T
Q  130 tttcttatgtacgccctataaatgtgttgcaaa 162  Q
    |||||||||||  |||||||||| |||||||||    
T  19334810 tttcttatgtaacccctataaatatgttgcaaa 19334778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 24065370 - 24065291
Alignment:
Q  61 ctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttcttatgta 140  Q
    ||||||||||||||||||||  ||| |||||| |  |||||||||  |||||||||||||||||||||||||||||||||    
T  24065370 ctatgaatttcttatataaactcctataaattgggcaatttctttagcttttttattatttgcttgcaatttcttatgta 24065291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 21488216 - 21488084
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt-t 106  Q
    |||||||||||||||||| |    |||  |||||||||||||||||||||||||| ||||||||||||| ||| |||  |||||| |  |||||||||      
T  21488216 gggcactcgtccgggctctgtcctaaagcttttataatttcttgtgtaaattcctttgaatttcttatagaaaccccgataaattggacaatttctttag 21488117  T
Q  107 ccttttttattatttgcttgcaatttcttatgta 140  Q
      |||||||||| |||||||||||||||||||||    
T  21488116 atttttttatta-ttgcttgcaatttcttatgta 21488084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 43282851 - 43282962
Alignment:
Q  30 tcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttc-ttttccttttttattatttgcttgca 128  Q
    |||||||||||| |||||||| ||||||||| | ||||||| ||||||||| |||| |||||| | ||||||| ||     ||||||||||||||||||     
T  43282851 tcaaattttttacaatttcttatgtaaattcttctgaatttattatataaatccctataaattgggtaatttcattagaaatttttattatttgcttgct 43282950  T
Q  129 atttcttatgta 140  Q
    ||||||||||||    
T  43282951 atttcttatgta 43282962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 16523245 - 16523172
Alignment:
Q  19 cgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatt 92  Q
    ||||||||||  ||||||||||| |||||| | ||||||| ||||||||||||||||||||| |||| ||||||    
T  16523245 cgggctccggcccaaattttttacaatttcatatgtaaatccctatgaatttcttatataaatccctataaatt 16523172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 10112187 - 10112042
Alignment:
Q  18 ccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-at 116  Q
    |||||||| || |||| ||||||  ||||| || ||||||||||| | |||||||||||||||  | | |||||| |  ||||||||||  |||||| ||    
T  10112187 ccgggctctggctcaatttttttgcaattttttatgtaaattcctcttaatttcttatataaactcttataaattggacaatttcttttaattttttgat 10112088  T
Q  117 tatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 161  Q
    |||||  |||||||||||||||| |  |||||||||| ||||||||    
T  10112087 tatttatttgcaatttcttatgtaaacccctataaatatgttgcaa 10112042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 16818974 - 16819105
Alignment:
Q  31 caaattttttataatttcttgtgtaaat-tcctatgaatttcttatataaaaccctctaaatttgttaatttct---tttccttttttattatttgcttg 126  Q
    ||||||||||  |||||||| ||||||| |||| ||||||||||||||||| |||| |||||| | ||||||||   | |  | ||||||||||||||||    
T  16818974 caaattttttgcaatttcttttgtaaatctcct-tgaatttcttatataaacccctataaattgggtaatttctctatctagtattttattatttgcttg 16819072  T
Q  127 caatttcttatgt-acgccctataaatgtgttg 158  Q
    |||||| |||| | |  ||||||||||||||||    
T  16819073 caattttttatataaacccctataaatgtgttg 16819105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 140
Target Start/End: Original strand, 34697469 - 34697500
Alignment:
Q  109 ttttttattatttgcttgcaatttcttatgta 140  Q
    ||||||||||||||||||||||||||||||||    
T  34697469 ttttttattatttgcttgcaatttcttatgta 34697500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 16591377 - 16591425
Alignment:
Q  32 aaattttttataatttcttgtgtaaattcctatgaatttcttatataaa 80  Q
    |||||||||  |||||||| |||||||| ||| ||||||||||||||||    
T  16591377 aaattttttgcaatttcttatgtaaatttctaagaatttcttatataaa 16591425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 21853347 - 21853194
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| ||||||||||  |||||||||||||||| |||||||||||||||||||||||||| |||||| |  ||||||||| |    
T  21853347 gggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaaccctataaattgggcaatttctttac 21853248  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 161  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21853247 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 21853194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 13856249 - 13856096
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||| | |||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  13856249 gggcacttgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattggacaatttctttac 13856150  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 161  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13856149 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 13856096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 6 - 162
Target Start/End: Complemental strand, 5391609 - 5391453
Alignment:
Q  6 ctgggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt 105  Q
    ||||||||||| |||||||||| | ||| ||||| | |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  |||||||||    
T  5391609 ctgggcactcgcccgggctccgcgccaattttttgacaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttcttt 5391510  T
Q  106 tccttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5391509 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 5391453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 8950482 - 8950636
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||| ||| ||||||||||  |||||||||||||||||||||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  8950482 gggcactcgcccgggctctgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaatccctataaattgggcaatttctttac 8950581  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     |||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  8950582 attttttattatttgcttgaaatttcttatgtacgccctataaatatgttgcaaa 8950636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 40845895 - 40846049
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||| ||| ||||| |||||||||||||||||  ||||| |||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  40845895 gggcattcgcccgggttccgggtcaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 40845994  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40845995 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 40846049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 32353004 - 32352843
Alignment:
Q  1 cggttctgggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatt 100  Q
    |||||| ||||||||| |||||||||||| ||| ||||||  |||||||||| ||||| ||||||||||||||||||||| |||| |||||| |  ||||    
T  32353004 cggttccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtataaatccctatgaatttcttatataaacccctataaattaggcaatt 32352905  T
Q  101 tcttttccttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
    ||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32352904 tctttacattttttattatttgcttacaatttcttatgtacgccctataaatgtgttgcaaa 32352843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 44994957 - 44995101
Alignment:
Q  19 cgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctc-taaatttgttaatttcttttccttttttatt 117  Q
    ||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||  |||||| |  ||||||||| | |||||||||    
T  44994957 cgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaccccttataaattgggcaatttctttacattttttatt 44995056  T
Q  118 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44995057 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 44995101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 23467507 - 23467628
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttcttatgtacg 142  Q
    ||||| |||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| | ||||||||||||||||||||||||||||||||||    
T  23467507 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacg 23467606  T
Q  143 ccctataaatgtgttgcaaaaa 164  Q
    ||||||||||||||||||||||    
T  23467607 ccctataaatgtgttgcaaaaa 23467628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 20382668 - 20382514
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt-t 106  Q
    ||||||| | |||||||||||  |||||||||| ||||||||| ||||||| ||||||||||||||||||||| |||| |||||| |  |||||||||      
T  20382668 gggcacttgcccgggctccggcccaaatttttt-taatttcttatgtaaatccctatgaatttcttatataaacccctataaattgggaaatttctttag 20382570  T
Q  107 ccttttttattatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 161  Q
      ||||||||||||||||||||||||||||||||  | |||||||||| |||||||    
T  20382569 atttttttattatttgcttgcaatttcttatgtaaactcctataaatgcgttgcaa 20382514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 3178847 - 3178699
Alignment:
Q  14 tcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttt 113  Q
    ||||| |||||||||  ||||||||||  |||||||||||||||| ||||||||||||||||||||| | || |||||| |  |||||||||   |||||    
T  3178847 tcgtctgggctccggcccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaatctctataaattgggcaatttctttagtttttt 3178748  T
Q  114 tattatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 161  Q
    | |||||||||||||||||| ||||||  | ||||||||| ||||||||    
T  3178747 ttttatttgcttgcaatttcgtatgtaaactcctataaatatgttgcaa 3178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 43347313 - 43347468
Alignment:
Q  7 tgggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttctttt 106  Q
    |||||| | ||||||||||||   ||||||||||  |||||||| ||||||||||| ||||||||||||||||| ||||  ||||| |  |||||||||     
T  43347313 tgggcagttgtccgggctccgacccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctacaaattgggcaatttcttta 43347412  T
Q  107 cctttttt-attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 161  Q
      |||||| ||||||||||||||||||||||||||  |||||||| | ||||||||    
T  43347413 gattttttgattatttgcttgcaatttcttatgtaaaccctataattatgttgcaa 43347468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 19649359 - 19649506
Alignment:
Q  17 tccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-- 114  Q
    ||||||||||||  ||| |||||| ||||||||| |||||||  |||||||||||||||||||| || | |||||| |  |||||||||   ||||||      
T  19649359 tccgggctccggcacaacttttttgtaatttcttatgtaaatcgctatgaatttcttatataaacccttataaattggacaatttctttagattttttgg 19649458  T
Q  115 attatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 161  Q
    ||||||||||||||||||||||||| |  |||||||||||||||||||    
T  19649459 attatttgcttgcaatttcttatgtaattccctataaatgtgttgcaa 19649506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 10839368 - 10839514
Alignment:
Q  18 ccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-at 116  Q
    ||||||||||   ||||||||||  |||||||| |||||||| || ||||||||||||||||| | || |||||| |  |||||||||   |||||| ||    
T  10839368 ccgggctccgacccaaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacctctataaattgggcaatttctttagattttttgat 10839467  T
Q  117 tatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaaa 162  Q
    ||||||||||||||||||||||||  | |||||| ||||||||||||    
T  10839468 tatttgcttgcaatttcttatgtaaacacctatacatgtgttgcaaa 10839514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 22845363 - 22845484
Alignment:
Q  31 caaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaat 130  Q
    ||||||||||  |||||||| |||||||||   | ||||||||||||||| |||| ||||||||  |||||||||   ||||||||||||||||||||||    
T  22845363 caaattttttgcaatttcttatgtaaattcacctaaatttcttatataaacccctataaatttgacaatttctttagattttttattatttgcttgcaat 22845462  T
Q  131 ttcttatgtacgccctataaat 152  Q
    || |||| ||  ||||||||||    
T  22845463 tttttatataaaccctataaat 22845484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 31 - 161
Target Start/End: Complemental strand, 1781889 - 1781757
Alignment:
Q  31 caaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-attatttgcttgcaa 129  Q
    ||||||||||  |||||||| ||||||| ||| ||||||||||||||||| |||  |||||| |  |||||||||   |||||| |||||||||||||||    
T  1781889 caaattttttgcaatttcttatgtaaatccctctgaatttcttatataaaccccaataaattgggcaatttctttagattttttgattatttgcttgcaa 1781790  T
Q  130 tttcttatgt-acgccctataaatgtgttgcaa 161  Q
    |||| ||||| |  |||||||||||||||||||    
T  1781789 tttcgtatgtaaacccctataaatgtgttgcaa 1781757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 157
Target Start/End: Complemental strand, 54547019 - 54546904
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttcttatgt-ac 141  Q
    ||||||||  |||||||||| ||||||||||||||||| |||| |||||| |  |||||||||   ||||| ||||||||||| ||||||||||||| |     
T  54547019 aatttcttacgtaaattcctttgaatttcttatataaacccctataaattggacaatttctttagatttttgattatttgcttacaatttcttatgtaaa 54546920  T
Q  142 gccctataaatgtgtt 157  Q
     |||||||||||||||    
T  54546919 tccctataaatgtgtt 54546904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 33103858 - 33103738
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttcttatgt-ac 141  Q
    |||||||| ||||||||||  | ||||||||||||||  |||| |||||| | |||||| |||   |||||||||||||||||| |||||||||||| |     
T  33103858 aatttcttatgtaaattcccttaaatttcttatataagtccctataaattggataatttatttaaattttttattatttgcttgtaatttcttatgtaaa 33103759  T
Q  142 gccctataaatgtgttgcaaa 162  Q
     || |||||||||||||||||    
T  33103758 tccttataaatgtgttgcaaa 33103738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 43 - 160
Target Start/End: Complemental strand, 8926881 - 8926762
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-attatttgcttgcaatttcttatg-ta 140  Q
    |||||| | ||||||||||| ||||||||| ||||||| |||| ||||||||  ||||||| |   |||||| |||||||||||||||||||||||| ||    
T  8926881 aatttcatatgtaaattcctctgaatttctgatataaacccctataaatttggcaatttctgtagattttttgattatttgcttgcaatttcttatgtta 8926782  T
Q  141 cgccctataaatgtgttgca 160  Q
      || |||||||||||||||    
T  8926781 acccttataaatgtgttgca 8926762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 36539782 - 36539627
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||| ||| |||||||||||   ||||||| |  |||||||| ||||||| ||||| ||||||||||||||  |||| |||||| |  |||||||||      
T  36539782 gggcagtcgcccgggctccggcctaaattttatgcaatttcttatgtaaatccctataaatttcttatataatcccctataaattgggcaatttctttaa 36539683  T
Q  108 ctttttt-attatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 161  Q
     |||||| |||||||| |||||||||| ||||| |  |||||||||||||||||||    
T  36539682 attttttgattatttgtttgcaatttcctatgtaaacccctataaatgtgttgcaa 36539627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 46685797 - 46685891
Alignment:
Q  44 atttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttcttatg 138  Q
    ||||||| ||||||| ||  | |||||||||||||||  ||| ||||||||  |||||||||   |||||||||||||| |||||||||||||||    
T  46685797 atttcttatgtaaatccccctaaatttcttatataaactcctataaatttgacaatttctttatattttttattatttgtttgcaatttcttatg 46685891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 48206968 - 48206848
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-attatttgcttgcaatttcttatgtac 141  Q
    ||||| || ||||||||||| |||||| |||||||||| |||| ||||||||  ||||| |||   |||||| ||||||| ||||||||||||||||||     
T  48206968 aattttttatgtaaattcctctgaatt-cttatataaacccctataaatttgacaatttttttagattttttgattatttacttgcaatttcttatgtaa 48206870  T
Q  142 gc-cctataaatgtgttgcaaa 162  Q
     | | |||||||||||||||||    
T  48206869 acacttataaatgtgttgcaaa 48206848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 6280372 - 6280492
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttcttatgtacg 142  Q
    |||||||| |||||||| |  ||||||||||||||||| | || ||||||||  ||||| |||   ||||| || |||||||||| |||| |||||||      
T  6280372 aatttcttatgtaaatttccctgaatttcttatataaacctctataaatttgacaatttatttagatttttgataatttgcttgccattttttatgtaaa 6280471  T
Q  143 cc-ctataaatgtgttgcaaa 162  Q
    ||  |||||||||||||||||    
T  6280472 cctttataaatgtgttgcaaa 6280492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 51336324 - 51336231
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttctta 136  Q
    ||||| || |||||||||   ||||||| ||||||||| |  | ||||||||  |||||||||   ||||||||||||| ||||||||||||||    
T  51336324 aattttttatgtaaattctcctgaattttttatataaatctttataaatttgacaatttctttaaattttttattatttacttgcaatttctta 51336231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 27642798 - 27642738
Alignment:
Q  20 gggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaa 80  Q
    ||||||| | |||||||||||  |||||||| ||||||| | | |||||||||||||||||    
T  27642798 gggctcctgctcaaattttttgcaatttcttatgtaaatccttttgaatttcttatataaa 27642738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 44164721 - 44164875
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| ||||||||||  ||||||||||||||||| |||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  44164721 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatttctatgaatttcttatataaacccctataaattgggcaatttctttac 44164820  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44164821 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 44164875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 34707266 - 34707113
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  34707266 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 34707167  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 161  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34707166 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 34707113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 6 - 162
Target Start/End: Original strand, 29555915 - 29556071
Alignment:
Q  6 ctgggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt 105  Q
    ||||||||||| |||| ||||||| ||| ||||| | |||||||||||||||||||||||||||||||||||||| |||| |||||| |  |||||||||    
T  29555915 ctgggcactcgcccggcctccgggccaattttttgacaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattggacaatttcttt 29556014  T
Q  106 tccttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29556015 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 29556071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 24320427 - 24320572
Alignment:
Q  18 ccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttatt 117  Q
    |||||||||||| ||||||||||  ||||||||||||||||||||| |||||||||||||||| |||| |||||| |  ||||||||| | |||||||||    
T  24320427 ccgggctccgggccaaattttttgcaatttcttgtgtaaattcctacgaatttcttatataaacccctataaattgggcaatttctttacattttttatt 24320526  T
Q  118 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24320527 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 24320572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 10576823 - 10576669
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||  |||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  10576823 gggcactcacccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 10576724  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10576723 attttttattatttgcttgcaatttcttatgtacgccctataaatgtattgcaaa 10576669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 29238121 - 29238275
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| ||| ||||||  |||||||||||||||| ||||||||||||||||||||| ||||  ||||| |  ||||||||| |    
T  29238121 gggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctaaaaattggaaaatttctttac 29238220  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     ||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  29238221 attttttattatttgcttacaatttcttatgtaggccctataaatgtgttgcaaa 29238275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 34259668 - 34259526
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| ||| ||||||  |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  34259668 gggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 34259569  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataa 150  Q
     ||||||||||||||||||||||||||||||||||||||||||    
T  34259568 attttttattatttgcttgcaatttcttatgtacgccctataa 34259526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 32876523 - 32876662
Alignment:
Q  23 ctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttg 122  Q
    ||||||| ||||||||||  ||||||||||||| || ||||||||||||||||||||| |||| |||||| |  ||||||||| | ||||||||||||||    
T  32876523 ctccgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatttg 32876622  T
Q  123 cttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  32876623 cttgcaatttcttatgtacgctctataaatgtgttgcaaa 32876662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 29981091 - 29981226
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| ||| | ||||  |||||||||||||||| |||||||||||||||||||||   || |||||| |  |||||||||      
T  29981091 gggcactcgcccgggctccgggccaattcttttgcaatttcttgtgtaaatccctatgaatttcttatataaacttctataaattggacaatttctttat 29981190  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgc 143  Q
     |||||||||||||||||||||||||||||||||||    
T  29981191 attttttattatttgcttgcaatttcttatgtacgc 29981226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 33057645 - 33057789
Alignment:
Q  18 ccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt-tccttttttat 116  Q
    |||||||||||  ||| ||||||  |||||||| ||||||| ||||||||||||||||||||  |||| ||||||    |||||||||    ||||||||    
T  33057645 ccgggctccggcccaattttttttcaatttcttatgtaaatccctatgaatttcttatataatcccctataaattgaacaatttctttagatttttttat 33057744  T
Q  117 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 161  Q
    ||||||||||||||||||||||||   ||||||||||||||||||    
T  33057745 tatttgcttgcaatttcttatgtaaatcctataaatgtgttgcaa 33057789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 17303102 - 17303248
Alignment:
Q  18 ccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt--tcctttttta 115  Q
    ||||||||||   ||| ||||||  |||||||| ||||||||||||||||||||||||||||| || | |||||| |  |||||||||     |||||||    
T  17303102 ccgggctccgacccaatttttttgcaatttcttatgtaaattcctatgaatttcttatataaacccttgtaaattgggcaatttctttagatttttttta 17303201  T
Q  116 ttatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 161  Q
    |||||||||||||||||||||||||  || |||||||||||||||||    
T  17303202 ttatttgcttgcaatttcttatgtaaaccactataaatgtgttgcaa 17303248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 19334573 - 19334693
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt--tccttttttattatttgcttgcaatttcttatgta 140  Q
    |||||||| ||||||| ||||||||||||||||||||| |||| |||||| |  |||||||||     ||||||||||||||||||||||||||||| ||    
T  19334573 aatttcttatgtaaatacctatgaatttcttatataaacccctataaattggacaatttctttagattttttttattatttgcttgcaatttcttatata 19334672  T
Q  141 cgccctataaatgtgttgcaa 161  Q
      |||||||||| ||||||||    
T  19334673 aaccctataaatttgttgcaa 19334693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 10334318 - 10334173
Alignment:
Q  18 ccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcct-tttttat 116  Q
    |||||||| ||  ||| ||||||  |||||||| ||||||||||| |||||||||||||||||  | | |||||| |  |||||||||   | ||||||     
T  10334318 ccgggctctggcccaatttttttgcaatttcttatgtaaattcctctgaatttcttatataaactcttataaattgggcaatttctttagatatttttaa 10334219  T
Q  117 tatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 161  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||    
T  10334218 tatttgcttgcaatttcttatgtaaacccctataaatgtgttgcaa 10334173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 15017888 - 15017851
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaa 80  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  15017888 aatttcttatgtaaattcctctgaatttcttatataaa 15017851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 26284457 - 26284510
Alignment:
Q  109 ttttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 161  Q
    ||||||||||||| ||||||||||||| ||| |  |||||||||||||||||||    
T  26284457 ttttttattattttcttgcaatttcttttgtaaacccctataaatgtgttgcaa 26284510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 43342525 - 43342488
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaa 80  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  43342525 aatttcttatgtaaattcctctgaatttcttatataaa 43342488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 49284507 - 49284353
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    |||||||||||||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  49284507 gggcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 49284408  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49284407 attttttattatttgtttgcaatttcttatgtacgccctataaatgtgttgcaaa 49284353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 1535921 - 1535767
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  1535921 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 1535822  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1535821 attttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaa 1535767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 25954890 - 25954746
Alignment:
Q  18 ccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttatt 117  Q
    |||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||  ||| |||||| |  ||||||||| | |||||||||    
T  25954890 ccgggctccgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaactcctataaattgggcaatttctttacattttttatt 25954791  T
Q  118 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25954790 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 25954746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 6 - 162
Target Start/End: Complemental strand, 35019087 - 35018932
Alignment:
Q  6 ctgggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt 105  Q
    ||||||||||| |||||||| ||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| || | |||||| | ||||||||||    
T  35019087 ctgggcactcgcccgggctctgggccaaattttttacaatttcttgtgtaaat-cctatgaatttcttatataaacccttataaattaggtaatttcttt 35018989  T
Q  106 tccttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     | ||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  35018988 acattttttattatttgcttgcaatttcttatgtacaccttataaatgtgttgcaaa 35018932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 34241133 - 34240988
Alignment:
Q  18 ccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttatt 117  Q
    |||||||||||| ||||||||||  ||||||||||||| || ||||||||||||||||||||| |||| |||||| |  ||||||||| | |||||||||    
T  34241133 ccgggctccgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttatt 34241034  T
Q  118 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 163  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  34241033 atttgcttgcaatttcttatgtacgccctataaatgtgttgtaaaa 34240988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 37801243 - 37801396
Alignment:
Q  9 ggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcc 108  Q
    |||| ||||||||||||||||  |||||||||  ||||||||||||||||| |||||||||| ||||||||| |||| |||||| |  || |||||| |     
T  37801243 ggcattcgtccgggctccgggctaaattttttgcaatttcttgtgtaaatttctatgaattttttatataaatccctataaattgggcaaattctttaca 37801342  T
Q  109 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37801343 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 37801396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 52632633 - 52632514
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttcttatgtacg 142  Q
    |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| | ||||||| ||||||||||||||||||||||||||    
T  52632633 aatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttacattttttaatatttgcttgcaatttcttatgtacg 52632534  T
Q  143 ccctataaatgtgttgcaaa 162  Q
    ||||||||||||||||||||    
T  52632533 ccctataaatgtgttgcaaa 52632514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 6 - 162
Target Start/End: Original strand, 36012162 - 36012317
Alignment:
Q  6 ctgggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt 105  Q
    ||||||||||||| ||||| |||| ||||||||||  ||||| |||||||||| ||||||||||||||||||||| |||| |||||| |  |||||||||    
T  36012162 ctgggcactcgtc-gggcttcgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 36012260  T
Q  106 tccttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     | |||||||||||||||||||||||| ||||||| | | |||||||||||||||||    
T  36012261 acattttttattatttgcttgcaattttttatgtatgtcatataaatgtgttgcaaa 36012317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 46583554 - 46583669
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttcttatgtacg 142  Q
    ||||| |||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| | ||||||||||||||||||||||||||||||||||    
T  46583554 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacg 46583653  T
Q  143 ccctataaatgtgttg 158  Q
    || |||||||||||||    
T  46583654 ccatataaatgtgttg 46583669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 17888528 - 17888683
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt-t 106  Q
    ||||||||| |||||||||||  ||||||||||  |||||||| ||||||||||||||||||||||||||||  |||| |||||| |  |||||||||      
T  17888528 gggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataaccccctataaattgggcaatttctttag 17888627  T
Q  107 ccttttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 161  Q
      ||||||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  17888628 atttttttattatttgcttgcaatttcttatgtaaacccctataaatgtgttgcaa 17888683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 16338207 - 16338318
Alignment:
Q  24 tccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgc 123  Q
    |||||| ||| ||||||  ||||| |||||||||||||||||||||| ||||||||| |||| |||||| |  ||||||||| | |||||||||||||||    
T  16338207 tccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaatccctataaattggacaatttctttacattttttattatttgc 16338306  T
Q  124 ttgcaatttctt 135  Q
    ||||||||||||    
T  16338307 ttgcaatttctt 16338318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 16338311 - 16338375
Alignment:
Q  97 aatttcttttccttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 161  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16338311 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 16338375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 31377539 - 31377385
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||  ||||||||||  |||||||| ||||||| ||||||||||||||||||||  | || |||||| |  |||||||||      
T  31377539 gggcactcgcccgggctccggcccaaattttttc-aatttcttatgtaaatccctatgaatttcttatataaccctctataaattgggcaatttctttag 31377441  T
Q  108 ctttttt-attatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 161  Q
     |||||| | ||||||||||||||||||||||||  || |||||||||||||||||    
T  31377440 attttttaactatttgcttgcaatttcttatgtaaaccgctataaatgtgttgcaa 31377385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 20818717 - 20818584
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||| |   ||||||||||  |||||||| ||||||| |||||||||||||||||||||  ||| |||||| || ||||| |||      
T  20818717 gggcactcgcccgggctctgacccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaactcctataaattggtcaatttttttag 20818618  T
Q  108 ctttttt-attatttgcttgcaatttcttatgta 140  Q
     |||||| |||||||| |||||||||||||||||    
T  20818617 attttttgattatttgtttgcaatttcttatgta 20818584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 10094394 - 10094495
Alignment:
Q  31 caaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-attatttgcttgcaa 129  Q
    |||||||||| ||||||||| |||||||| || ||||||||||||||||| |||| |||||| | |||||| |||   |||||| |||||||||||||||    
T  10094394 caaattttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttatttagattttttgattatttgcttgcaa 10094493  T
Q  130 tt 131  Q
    ||    
T  10094494 tt 10094495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 36851365 - 36851442
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccct 85  Q
    ||||||||| | |||||||||| ||||||||||  |||||||||||||||| ||||||||||| ||||||||| ||||    
T  36851365 gggcactcgcctgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttattatataaacccct 36851442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 35 - 156
Target Start/End: Original strand, 9742538 - 9742661
Alignment:
Q  35 ttttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-attatttgcttgcaatttc 133  Q
    ||||||| |||||||| ||||||||||| |||||||||||||| || |||| |||||| |  |||||||||   |||||| ||||||| | |||||||||    
T  9742538 ttttttacaatttcttatgtaaattcctctgaatttcttatattaacccctataaattgggcaatttctttagattttttgattattttcatgcaatttc 9742637  T
Q  134 ttatgtacgc-cctataaatgtgt 156  Q
    |||||||  | |||||||||||||    
T  9742638 ttatgtaaacacctataaatgtgt 9742661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 46474130 - 46473987
Alignment:
Q  22 gctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttt-tattatt 120  Q
    |||||||  ||||||||||  |||||||| ||||||||||| ||||||| ||||||||| || | ||||||    |||||||||   ||||| |||||||    
T  46474130 gctccggcccaaattttttgcaatttcttatgtaaattcctgtgaattttttatataaacccatataaattgtacaatttctttagatttttgtattatt 46474031  T
Q  121 tgcttgcaatttcttatgt-acgccctataaatgtgttgcaaaa 163  Q
    |||||| |||||||||||| |  || ||||||||||||||||||    
T  46474030 tgcttgtaatttcttatgtaaatccttataaatgtgttgcaaaa 46473987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 50328936 - 50328790
Alignment:
Q  18 ccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt-tccttttttat 116  Q
    |||||||| || |||| ||||||  |||||||| ||||||||||| | ||||||||||||||| | || |||||| |  |||||||||    ||||||||    
T  50328936 ccgggctctggctcaatttttttgcaatttcttttgtaaattcctcttaatttcttatataaacctctataaattggacaatttctttaaatttttttat 50328837  T
Q  117 tatttgcttgcaatttcttatgtacgccc-tataaatgtgttgcaaa 162  Q
    ||||  |||||||||| |||||||  ||| |||||||||||||||||    
T  50328836 tattcacttgcaattttttatgtaaacccttataaatgtgttgcaaa 50328790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 12792209 - 12792365
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    |||||| ||||||||||  ||  ||| |||||| ||||||||| |||||||| || ||||||||||||||||| |||| |||||| |  |||| ||||      
T  12792209 gggcacgcgtccgggctttggcccaatttttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggcaattactttag 12792308  T
Q  108 cttttt-tattatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaaa 162  Q
     |||||  |||||||||||| |||||||||| ||  |  ||||||||||||||||||    
T  12792309 atttttagattatttgcttgaaatttcttatataaacatctataaatgtgttgcaaa 12792365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 11054595 - 11054448
Alignment:
Q  18 ccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt----tccttttt 113  Q
    ||||||||||| || ||||||||  |||||||| ||||||| ||||||||||||||||||||| | || |||||| |  ||| |||||    |  |||||    
T  11054595 ccgggctccgg-tccaattttttgcaatttcttatgtaaatccctatgaatttcttatataaacctctataaattgggcaatctctttagtatttttttt 11054497  T
Q  114 tattatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 161  Q
      |||||||||||||||||||||||||  ||  ||||||||||||||||    
T  11054496 atttatttgcttgcaatttcttatgtaaacctttataaatgtgttgcaa 11054448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 322584 - 322682
Alignment:
Q  65 gaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-attatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 161  Q
    |||||||||||||||| |||| |||||| |  |||||||||   |||||| ||||||||||||||||||||||||||  | ||| ||||||||||||||    
T  322584 gaatttcttatataaacccctataaattggacaatttctttaaattttttgattatttgcttgcaatttcttatgtaaacacctgtaaatgtgttgcaa 322682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 47084138 - 47084065
Alignment:
Q  32 aaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt 105  Q
    |||||||||  |||||||| |||||||| || ||||||||||||||||| |||| |||||| | ||||||||||    
T  47084138 aaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttcttt 47084065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 54090308 - 54090176
Alignment:
Q  30 tcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaa 129  Q
    |||||||||||  |||| ||| ||||||| ||| ||||||| |||||||||  | | |||||| |  ||||| |||   |||||||||||||||||||||    
T  54090308 tcaaattttttgcaattccttttgtaaatccctctgaatttattatataaactcttataaattgggcaatttttttagattttttattatttgcttgcaa 54090209  T
Q  130 -tttcttatgtacgccctataaatgtgttgcaa 161  Q
     ||| |||||||  ||||||| |||||||||||    
T  54090208 tttttttatgtaaaccctatagatgtgttgcaa 54090176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 19124751 - 19124849
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt-tccttttttattatttgcttgcaatttcttatgta 140  Q
    |||||||| ||||||||||| |||||||||||||||||   || ||||||  | |||||||||    ||||||||||||| ||| ||||||||||||||    
T  19124751 aatttcttatgtaaattcctctgaatttcttatataaacatctgtaaattgatcaatttctttaaatttttttattatttacttacaatttcttatgta 19124849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 33982130 - 33982057
Alignment:
Q  32 aaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt 105  Q
    |||||||||| |||||||| ||||||| ||| | |||||||||||||||  | | |||||| | ||||||||||    
T  33982130 aaattttttaaaatttcttttgtaaatccctctaaatttcttatataaactcttataaattagataatttcttt 33982057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 161
Target Start/End: Original strand, 35322709 - 35322837
Alignment:
Q  35 ttttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-attatttgcttgcaatttc 133  Q
    |||||| |||||| || | |||||| || ||||| ||||||||||| | || ||||||    |||||||||   |||||| |||||||||||||||||||    
T  35322709 ttttttgtaattttttatataaatttctctgaatctcttatataaacctctataaattgaacaatttctttagattttttgattatttgcttgcaatttc 35322808  T
Q  134 ttatgt-acgccctataaatgtgttgcaa 161  Q
    |||| | |  ||||||||| |||||||||    
T  35322809 ttatataaacccctataaaagtgttgcaa 35322837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 46583529 - 46583561
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaatttttt 40  Q
    ||||||||| |||||||||||||||||||||||    
T  46583529 gggcactcgcccgggctccgggtcaaatttttt 46583561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 29846592 - 29846439
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  29846592 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttac 29846493  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 161  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29846492 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 29846439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 42769736 - 42769890
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  42769736 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 42769835  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42769836 attttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaa 42769890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 14186417 - 14186570
Alignment:
Q  9 ggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcc 108  Q
    |||||||| ||| |||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| |     
T  14186417 ggcactcgcccgagctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttaca 14186516  T
Q  109 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14186517 ctttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 14186570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 14942025 - 14942176
Alignment:
Q  11 cactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctt 110  Q
    |||||| |||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| | ||    
T  14942025 cactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacatt 14942124  T
Q  111 ttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14942125 ttttattatttgcttgcaatttcttatgtacgccttataaatgtgttgcaaa 14942176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 40277266 - 40277420
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||| |||||||||||||| ||||||||||  ||||| || ||||||| ||||| ||||||||||||||| |||| |||||| |  ||||||||| |    
T  40277266 gggcacttgtccgggctccgggccaaattttttgcaattttttatgtaaatccctataaatttcttatataaatccctataaattgggcaatttctttac 40277365  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40277366 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 40277420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 31 - 162
Target Start/End: Complemental strand, 19181675 - 19181544
Alignment:
Q  31 caaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaat 130  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||| |||| |||||| |  ||||||||| | ||||||||||||||||||||||    
T  19181675 caaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaat 19181576  T
Q  131 ttcttatgtacgccctataaatgtgttgcaaa 162  Q
    |||||||||| |||||||||||||||||||||    
T  19181575 ttcttatgtatgccctataaatgtgttgcaaa 19181544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 38491723 - 38491823
Alignment:
Q  235 aaatgtatgaagtgtgaacaaaaagggttgggggatctatcgagtttttgactttgaacagtagcatatccatgttgatactggcacgtatgactttgat 334  Q
    ||||||||||||||||||||||||||||||||  || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  38491723 aaatgtatgaagtgtgaacaaaaagggttggg--atttatcgagtttttgactttgaaccgtagcatatccatgttgatactggcacgtatgactttaat 38491820  T
Q  335 aat 337  Q
    |||    
T  38491821 aat 38491823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 1387312 - 1387421
Alignment:
Q  54 taaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttcttatgtacgccc-tataaat 152  Q
    ||||| ||||||||||||||| ||||| |||| |||||| | ||||||||||   ||||||||||||||||||||||||||||||||  ||| || ||||    
T  1387312 taaatccctatgaatttcttagataaacccctataaattgggtaatttctttagattttttattatttgcttgcaatttcttatgtaaacccttacaaat 1387411  T
Q  153 gtgttgcaaa 162  Q
    ||||||||||    
T  1387412 gtgttgcaaa 1387421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 40780179 - 40780050
Alignment:
Q  35 ttttttataatttcttgtgtaaattcctatgaatttcttatataaa-accctctaaatttgttaatttcttttcctttttt-attatttgcttgcaattt 132  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||  ||||| |||   |||||| ||||||||||||||||||    
T  40780179 ttttttgtaatttcttatgtaaattcctctgaatttcttatataaacaccctataaatttgacaatttttttaaattttttaattatttgcttgcaattt 40780080  T
Q  133 cttatgtacgcc-ctataaatgtgttgcaa 161  Q
    ||||||||  || |||||||| ||||||||    
T  40780079 cttatgtaaaccgctataaatatgttgcaa 40780050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 6318471 - 6318592
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt--tccttttttattatttgcttgcaatttcttatgta 140  Q
    |||||||| ||||||| ||||||||||||||||||||| |||| |||||| |  |||||||||     |||||||||||||||||||||||||  |||||    
T  6318471 aatttcttatgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagattttttttattatttgcttgcaatttcaaatgta 6318570  T
Q  141 cg-ccctataaatgtgttgcaa 161  Q
     | |||||||||||||||||||    
T  6318571 agcccctataaatgtgttgcaa 6318592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 3597903 - 3597999
Alignment:
Q  66 aatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
    |||||||| | |||| |||| |||||| |  ||||||||| | ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||    
T  3597903 aatttcttgtgtaaatccctataaattggacaatttctttacattttttattatttacttgcaatttcttacgtacgccctataaatgtattgcaaa 3597999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 162
Target Start/End: Original strand, 14539705 - 14539838
Alignment:
Q  31 caaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt-tccttttttattatttgcttgcaa 129  Q
    ||||||||||  |||||||| ||||| ||||| |||||||||||||||||  ||| |||||| |  |||||||||    ||||||||||||| |||||||    
T  14539705 caaattttttgcaatttcttatgtaatttcctctgaatttcttatataaattcctataaattaggcaatttctttagatttttttattattttcttgcaa 14539804  T
Q  130 tttcttatgtacgc-cctataaatgtgttgcaaa 162  Q
    |||||||| ||  | |||||||||||||||||||    
T  14539805 tttcttatataaacacctataaatgtgttgcaaa 14539838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 3956722 - 3956567
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt-t 106  Q
    ||||||||| |||||||||||  ||||   |||  ||||| || ||||||| ||||||||||| ||||||||| |||| |||||| |  |||||||||      
T  3956722 gggcactcgcccgggctccggcccaaaaaattttcaattttttatgtaaatccctatgaatttattatataaacccctgtaaattggacaatttctttaa 3956623  T
Q  107 ccttttttattatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 161  Q
      |||||||||||||||||||||||||  |||||  || |||||||||||||||||    
T  3956622 aattttttattatttgcttgcaatttcaaatgtaaacctctataaatgtgttgcaa 3956567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 32 - 163
Target Start/End: Complemental strand, 33009799 - 33009665
Alignment:
Q  32 aaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttt--ttattatttgcttgcaa 129  Q
    |||||||||| |||||||| | ||||| ||||||||||| ||||||||| || | |||||| |  |||||||||   ||||  |||||||||||||||||    
T  33009799 aaattttttacaatttcttatataaatccctatgaatttgttatataaatccttataaattggacaatttctttagatttttattattatttgcttgcaa 33009700  T
Q  130 tttcttatgtacgccc-tataaatgtgttgcaaaa 163  Q
    ||| |||||||  ||| |||||| |||||||||||    
T  33009699 ttttttatgtaaacccatataaacgtgttgcaaaa 33009665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 3597869 - 3597929
Alignment:
Q  9 ggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatt 69  Q
    |||||||| |||||||||||| ||||||||||  |||||||||||||||| ||||| ||||    
T  3597869 ggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctataaatt 3597929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 43139862 - 43139766
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt--tccttttttattatttgcttgcaatttcttat 137  Q
    |||||||| ||||| ||||| | ||||||||||||||| |||| ||||||    |||||||||     |||||||||||||||||||||||||||||    
T  43139862 aatttcttatgtaagttcctcttaatttcttatataaacccctataaattgagcaatttctttagattttttttattatttgcttgcaatttcttat 43139766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 41674719 - 41674841
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt--attatttgcttgcaatttcttatgt- 139  Q
    |||||||| |||||||  || ||||||| ||||||||| || | |||||| |  |||||||||   ||||||  | ||||||||||||||||||||| |     
T  41674719 aatttcttatgtaaatctctctgaattttttatataaacccttataaattggacaatttctttagatttttttaactatttgcttgcaatttcttatata 41674818  T
Q  140 acgccctataaatgtgttgcaaa 162  Q
    |  ||||||||||||||||||||    
T  41674819 aatccctataaatgtgttgcaaa 41674841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 23685406 - 23685503
Alignment:
Q  66 aatttcttatataaaaccctctaaatttgttaatttcttt-tccttttttattatttgcttgcaatttcttatgtacgccc-tataaatgtgttgcaa 161  Q
    ||||||||||||||| || | ||||||||  ||||| ||| |   |||| ||||||||||||||||||||||||||  ||| ||||||| ||||||||    
T  23685406 aatttcttatataaatccttataaatttgacaatttatttatatattttgattatttgcttgcaatttcttatgtaaacccttataaatatgttgcaa 23685503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 28321716 - 28321836
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-attatttgcttgcaatttcttatgt-a 140  Q
    |||||||| |||||||||   ||||| ||||||||||| || | |||||| |  |||||| ||   |||||| ||||||||||| ||||||||||| | |    
T  28321716 aatttcttatgtaaattctcctgaatatcttatataaacccttataaattgggcaatttcattgaattttttgattatttgcttccaatttcttatataa 28321815  T
Q  141 cgccctataaatgtgttgcaa 161  Q
      |||||||||||||||||||    
T  28321816 acccctataaatgtgttgcaa 28321836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 6 - 162
Target Start/End: Original strand, 24694627 - 24694783
Alignment:
Q  6 ctgggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt 105  Q
    ||||||||||| |||||||||||| ||||||||||  |||||||||||||||| |||||||||||||||||||||  ||| |||||| |  |||||||||    
T  24694627 ctgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaatttcttt 24694726  T
Q  106 tccttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24694727 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 24694783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 9231832 - 9231985
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| ||| ||||||  ||||||||||||||||  |||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  9231832 gggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggcaatttctttac 9231931  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 161  Q
     |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9231932 attttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaa 9231985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 14309794 - 14309930
Alignment:
Q  26 cgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgctt 125  Q
    |||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| | |||||||||||||||||    
T  14309794 cgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgctt 14309893  T
Q  126 gcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
    |||||||||||||||||||||||||||||||||||||    
T  14309894 gcaatttcttatgtacgccctataaatgtgttgcaaa 14309930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 163
Target Start/End: Complemental strand, 13627688 - 13627535
Alignment:
Q  10 gcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcct 109  Q
    |||||||||||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| |||| ||||||    ||||||||| | |    
T  13627688 gcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttctttacat 13627589  T
Q  110 tttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 163  Q
    ||||||||||||||||| | ||||||||||||| ||||||||| ||||||||||    
T  13627588 tttttattatttgcttgtactttcttatgtacgtcctataaatatgttgcaaaa 13627535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 1727913 - 1728035
Alignment:
Q  10 gcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcct 109  Q
    ||||||| || ||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| |||| ||||||    ||||||||| | |    
T  1727913 gcactcgcccaggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttctttacat 1728012  T
Q  110 tttttattatttgcttgcaattt 132  Q
    |||||||||||| ||||||||||    
T  1728013 tttttattatttccttgcaattt 1728035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 11084659 - 11084606
Alignment:
Q  109 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11084659 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 11084606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 34103808 - 34103703
Alignment:
Q  35 ttttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttct 134  Q
    |||||| |||||| || ||||||||||| ||||||||||||||||| || | |||||| |  |||||||||   |||||||||||||| |||||||||||    
T  34103808 ttttttgtaatttattatgtaaattcctctgaatttcttatataaacccgtataaattgggaaatttctttagattttttattatttgtttgcaatttct 34103709  T
Q  135 tatgta 140  Q
    ||||||    
T  34103708 tatgta 34103703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 28750639 - 28750783
Alignment:
Q  19 cgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-att 117  Q
    ||||||| ||| ||| ||||||  |||||||| ||||||||| | ||||||||||||||||| |||| |||||| |  |||||||||   |||||| |||    
T  28750639 cgggctctgggccaatttttttgcaatttcttatgtaaattcttctgaatttcttatataaacccctataaattgggcaatttctttaatttttttgatt 28750738  T
Q  118 atttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 161  Q
    ||||||||| |||||||||||||  | | ||||||||||||||||    
T  28750739 atttgcttgtaatttcttatgtaaactcttataaatgtgttgcaa 28750783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 27863812 - 27863694
Alignment:
Q  45 tttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttcttatgtacgc- 143  Q
    |||||| |||||||| || ||||||||||||||||| || | |||||| |  |||||||||   |||||||||||||| |||||||||||||||||  |     
T  27863812 tttcttatgtaaatttctctgaatttcttatataaacccttataaattggacaatttctttagattttttattatttgtttgcaatttcttatgtaaaca 27863713  T
Q  144 cctataaatgtgttgcaaa 162  Q
     ||||||||||||||||||    
T  27863712 tctataaatgtgttgcaaa 27863694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 161
Target Start/End: Complemental strand, 11279634 - 11279536
Alignment:
Q  64 tgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 161  Q
    ||||||| |||||||||  | | |||||||| ||||||||||   ||||||||||||||||||||||||||||||| |  | |||||||||||||||||    
T  11279634 tgaattttttatataaattcttataaatttggtaatttctttagattttttattatttgcttgcaatttcttatgtaaatctctataaatgtgttgcaa 11279536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 13103109 - 13103246
Alignment:
Q  21 ggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-attat 119  Q
    ||||| || |||||||||||  ||||| || ||||||||||| ||||||||||||||||| |  | |||||| |  |||||||||   |||||| |||||    
T  13103109 ggctctggctcaaattttttgcaattttttatgtaaattcctctgaatttcttatataaacctttataaattgggcaatttctttagattttttgattat 13103208  T
Q  120 ttgcttgcaatttcttatgtacgc-cctataaatgtgt 156  Q
    ||||||||||||||| |||||  | |||||||||||||    
T  13103209 ttgcttgcaatttctaatgtaaacacctataaatgtgt 13103246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 24497565 - 24497636
Alignment:
Q  21 ggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatt 92  Q
    ||||||||  ||||||||||  ||||| |||||||||||||| ||||||||||||||||| |||| ||||||    
T  24497565 ggctccggcccaaattttttgcaattttttgtgtaaattcctctgaatttcttatataaacccctataaatt 24497636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 11084730 - 11084664
Alignment:
Q  18 ccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccc 84  Q
    ||||| |||| | ||| ||||||  |||||||||||||||||||||||||||||||||||||| |||    
T  11084730 ccgggttccgagccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccc 11084664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 24500780 - 24500830
Alignment:
Q  109 ttttttattatttgcttgcaatttcttatgtacgccc-tataaatgtgttg 158  Q
    ||||||||||||||||||||||||| ||||||  ||| |||||||||||||    
T  24500780 ttttttattatttgcttgcaatttcatatgtaaacccttataaatgtgttg 24500830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 11212765 - 11212689
Alignment:
Q  64 tgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttcttatgta 140  Q
    ||||||| || |||||| |||| |||||| |  |||||||||   ||||| |||||||||||| |||||||||||||    
T  11212765 tgaattttttctataaatccctataaattgggcaatttctttagatttttaattatttgcttgtaatttcttatgta 11212689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 34088832 - 34088788
Alignment:
Q  16 gtccgggctccgggtcaaattttttataatttcttgtgtaaattc 60  Q
    |||||||||||||  |||||||||| ||||||||| |||||||||    
T  34088832 gtccgggctccggcccaaattttttgtaatttcttatgtaaattc 34088788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 16618548 - 16618701
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||  ||| |||||| |  ||||| |||      
T  16618548 gggcactcgtccgggctccgggccaaattttttacaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattggacaatttttttat 16618647  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 161  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16618648 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 16618701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 38397748 - 38397595
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  38397748 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 38397649  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 161  Q
     |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38397648 attttttattatttgcttgcaatttcttatgtacgtcctataaatgtgttgcaa 38397595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 6257388 - 6257543
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||| ||| |||| |||||| |  ||||||||| |    
T  6257388 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatacaaacccctataaattgggcaatttctttac 6257487  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 163  Q
     ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6257488 attttttattatttgcttgcaatttcttatatacgccctataaatgtgttgcaaaa 6257543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 23218635 - 23218481
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| ||||| |||||| |||| |||||  |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  23218635 gggcactcgcccgggttccgggccaaagtttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 23218536  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23218535 attttttattatttgcttgcaatttcttatgtactccctataaatgtgttgcaaa 23218481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 37169011 - 37169165
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||| | |||||||||||| ||||||||||  ||||| |||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  37169011 gggcacttgcccgggctccgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 37169110  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37169111 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgtggcaaa 37169165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 39862465 - 39862619
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| ||| |||||||| ||| ||||||  |||||||||||||||||||||||||||||||||||||| |||| |||||| |  |||||||||      
T  39862465 gggcactcgcccgagctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttag 39862564  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  39862565 attttttattatttgcttgcaatttcttatatacgccctaaaaatgtgttgcaaa 39862619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 15631764 - 15631613
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccc-tctaaatttgttaatttctttt 106  Q
    ||||||||| ||||||||| || ||||||||||| |||||||||| ||||| ||||||||||||||||||||| ||| | |||||| |  |||||||||     
T  15631764 gggcactcgcccgggctccaggccaaattttttacaatttcttgtataaatccctatgaatttcttatataaaccccctataaattggacaatttcttta 15631665  T
Q  107 ccttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 158  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15631664 cattttttattatttgcttgcaatttcttatgtacgccctataaatgcgttg 15631613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 8456943 - 8457096
Alignment:
Q  10 gcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt-tcc 108  Q
    ||||||| |||||||||||  ||||||||||  |||||||| ||||||| ||||||||||||||||||||  |||| |||||| |  |||||||||        
T  8456943 gcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaatccctatgaatttcttatataaccccctataaattgggcaatttctttagat 8457042  T
Q  109 ttttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 161  Q
    ||||||||||||||||||||||||||||||| |  |||||||||| ||||||||    
T  8457043 ttttttattatttgcttgcaatttcttatgtaaacccctataaatatgttgcaa 8457096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 36769053 - 36769207
Alignment:
Q  9 ggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcc 108  Q
    |||||| |||||| ||||||  ||||||||||  |||||||| ||||||||||| ||||||||||||||||| | || | |||| |  |||||||||       
T  36769053 ggcacttgtccggactccggcccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacctctatgaattaggcaatttctttaga 36769152  T
Q  109 ttttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaaa 162  Q
    ||||| ||||||||||||||||||| ||||| |  ||||||||||||||||||||    
T  36769153 tttttgattatttgcttgcaatttcatatgtaaacccctataaatgtgttgcaaa 36769207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 614390 - 614522
Alignment:
Q  28 ggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt-tccttttttattatttgcttg 126  Q
    |||||| ||||||  |||||||| ||||||||||| ||||||| ||||||||| |||| ||||||||  |||||||||    ||||||||||||||||||    
T  614390 ggtcaatttttttgcaatttcttatgtaaattcctctgaattttttatataaatccctataaatttggcaatttctttagatttttttattatttgcttg 614489  T
Q  127 caatttcttatgtacgc-cctataaatgtgttg 158  Q
    ||||||||||||||  | |||||||||||||||    
T  614490 caatttcttatgtaaacacctataaatgtgttg 614522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 10081296 - 10081140
Alignment:
Q  9 ggcactcgtccgggctccgggtcaaattttttat--aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt- 105  Q
    |||||||| |||||||| ||  ||| |||||| |  |||||||| ||||||| ||||||||||||||||||||| |||| |||||| |  |||||||||     
T  10081296 ggcactcgcccgggctctggcccaattttttttttcaatttcttatgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 10081197  T
Q  106 tccttttttattatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 161  Q
       ||||||||||||||||| ||||||||||||||  | ||||||||||||||||||    
T  10081196 gatttttttattatttgcttacaatttcttatgtaaactcctataaatgtgttgcaa 10081140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 25560309 - 25560460
Alignment:
Q  11 cactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctt 110  Q
    |||||||||||||||||| |||| ||||||  |||||||| ||||||| | ||| |||||||||||||||   || |||||| |  |||||||||   ||    
T  25560309 cactcgtccgggctccggctcaatttttttc-aatttcttatgtaaatccttataaatttcttatataaacatctataaattggacaatttctttagatt 25560407  T
Q  111 -ttttattatttgcttgcaatttcttatgtacgccc-tataaatgtgttgcaa 161  Q
     ||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  25560408 attttattatttgcttgcaatttcttatgtaaacccatataaatgtgttgcaa 25560460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 161
Target Start/End: Complemental strand, 42119747 - 42119617
Alignment:
Q  33 aattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt-tccttttttattatttgcttgcaatt 131  Q
    |||||||| ||||||||| ||||||||||| ||||||||||||||||| | || |||||| |  |||||||||    |||||||||||||| ||| ||||    
T  42119747 aattttttgtaatttcttatgtaaattcctctgaatttcttatataaacctctataaattggacaatttctttagatttttttattatttgtttgtaatt 42119648  T
Q  132 tcttatgt-acgccctataaatgtgttgcaa 161  Q
    |||||||| |  |||||||||||||||||||    
T  42119647 tcttatgtaaacccctataaatgtgttgcaa 42119617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 6174873 - 6174762
Alignment:
Q  31 caaattttttataatttcttgtgtaaattcctatgaatttcttatataaa--accctctaaatttgttaatttcttttccttttttattatttgcttgca 128  Q
    |||||||||| |||||||||  |||||||| | |||||||||||||||||   |||| |||||| |  |||||||||   ||||||||||||||||||||    
T  6174873 caaattttttgtaatttcttacgtaaattcttctgaatttcttatataaacccccctataaattggacaatttctttatattttttattatttgcttgca 6174774  T
Q  129 atttcttatgta 140  Q
    ||||| ||||||    
T  6174773 atttcctatgta 6174762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 33271258 - 33271377
Alignment:
Q  18 ccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttatt 117  Q
    |||| ||||||  ||| ||||||| |||||||| ||||||||||  ||||||||||||||||| | || |||||| |  |||||||||   |||||||||    
T  33271258 ccggactccggcccaatttttttacaatttcttatgtaaattccgttgaatttcttatataaacctctataaattggacaatttctttatattttttatt 33271357  T
Q  118 atttgcttgcaatttcttat 137  Q
    ||||| ||| ||||||||||    
T  33271358 atttgtttgtaatttcttat 33271377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 9738008 - 9738094
Alignment:
Q  55 aaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-attatttgcttgcaatttcttatgta 140  Q
    |||| ||||||||||||||||||||| |||| |||||| |  |||||||||   ||||||  |||||||||||||||||||||||||    
T  9738008 aaatccctatgaatttcttatataaatccctataaattggacaatttctttagattttttgtttatttgcttgcaatttcttatgta 9738094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 162
Target Start/End: Complemental strand, 27916266 - 27916133
Alignment:
Q  32 aaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttc-ttttccttttttattatttgcttgcaat 130  Q
    |||||||||  |||||||| ||||||||||| |||||||||||||||||  ||| ||||||    |||||| ||    |||||||||||||| |||||||    
T  27916266 aaattttttgcaatttcttatgtaaattcctctgaatttcttatataaactcctataaattgagcaatttcattagatttttttattatttgtttgcaat 27916167  T
Q  131 ttcttatgt--acgccctataaatgtgttgcaaa 162  Q
    ||||||| |  ||  |||||||||||||||||||    
T  27916166 ttcttatataaacctcctataaatgtgttgcaaa 27916133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 11856411 - 11856290
Alignment:
Q  42 taatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-attatttgcttgcaatttcttatgta 140  Q
    ||||||||| |||||||  || ||||||||||||||||| | || |||||| |  |||||||||   |||||| ||||||| ||||||||||||||||||    
T  11856411 taatttcttatgtaaatcgctctgaatttcttatataaatcactataaattgggcaatttctttagattttttgattatttacttgcaatttcttatgta 11856312  T
Q  141 cgc-cctataaatgtgttgcaa 161  Q
      | ||||||||| ||||||||    
T  11856311 aactcctataaatatgttgcaa 11856290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 29790220 - 29790328
Alignment:
Q  31 caaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaat 130  Q
    |||| |||||| |||||||| ||||||||| ||||||||||||||||||| |  | |||||| |  |||||| |||  ||||| |||||||||||  |||    
T  29790220 caaaatttttacaatttcttatgtaaattcttatgaatttcttatataaacctttataaattgggcaatttc-tttagtttttgattatttgcttttaat 29790318  T
Q  131 ttcttatgta 140  Q
    ||||||||||    
T  29790319 ttcttatgta 29790328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 29491395 - 29491521
Alignment:
Q  11 cactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctt 110  Q
    |||||||||||||| | |  ||||| ||||  |||||||| |||||||| ||||||||||||||||| || |||| |||||| |  || ||||||   ||    
T  29491395 cactcgtccgggcttcagcccaaatcttttgcaatttcttatgtaaatttctatgaatttcttatat-aacccctataaattggacaa-ttctttaaatt 29491492  T
Q  111 tttt-attatttgcttgcaatttcttatg 138  Q
    |||| ||||||||||||||||||||||||    
T  29491493 ttttgattatttgcttgcaatttcttatg 29491521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 10115300 - 10115185
Alignment:
Q  18 ccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-at 116  Q
    |||||||||||  ||| ||||||  ||||| || ||||||||||| || |||||||||||||| |||  |||||| |  |||||||||   |||||| ||    
T  10115300 ccgggctccggcccaatttttttgcaattttttatgtaaattcctctggatttcttatataaaccccaataaattagacaatttctttagattttttaat 10115201  T
Q  117 tatttgcttgcaattt 132  Q
    ||||||||||||||||    
T  10115200 tatttgcttgcaattt 10115185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 3341121 - 3341230
Alignment:
Q  31 caaattttttataatttcttgtgtaaattcctatgaatttctt-atataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaa 129  Q
    ||||||||||  |||||||| ||||||||| | ||||||| || ||||||  |||| |||||| |  |||||||||  |||||| ||||||||||| |||    
T  3341121 caaattttttgcaatttcttatgtaaattc-tctgaatttttttatataatcccctataaattgggaaatttctttagctttttgattatttgctttcaa 3341219  T
Q  130 tttcttatgta 140  Q
    ||| |||||||    
T  3341220 ttttttatgta 3341230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 5975138 - 5974988
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| ||||||||||  |||||||||||||||| |||| |||||||||||||||| |||| |||||| |  ||||||||| |    
T  5975138 gggcactcgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctaagaatttcttatataaacccctataaattaggcaatttctttac 5975039  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 158  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5975038 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 5974988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 49902618 - 49902464
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    |||||||||  ||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| |||| |||||  |  ||||||||| |    
T  49902618 gggcactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaatagggcaatttctttac 49902519  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49902518 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 49902464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 3346936 - 3346782
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| ||| ||| |||| ||||||||||  ||||| |||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  3346936 gggcactcgcccgagcttcgggccaaattttttgcaatttgttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttac 3346837  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3346836 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 3346782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 10155994 - 10156148
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| ||| ||||||  ||||||||||||||||||||||||||||||||||||||   || |||||| |  |||||||||      
T  10155994 gggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacttctataaattggacaatttctttat 10156093  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10156094 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 10156148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 48392384 - 48392538
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||| | ||| ||||||  |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  |||||| || |    
T  48392384 gggcactcgcccgggctccgagccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcattac 48392483  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48392484 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 48392538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 42517272 - 42517430
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaa----ccctctaaatttgttaatttct 103  Q
    ||||||||| |||||||||||| ||||||||||  |||||||||||||||| |||||||||||||||||||||     |||| |||||| |  |||||||    
T  42517272 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacaaacccctataaattgggcaatttct 42517371  T
Q  104 tttccttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
    || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42517372 ttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 42517430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 7742757 - 7742911
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||| |  || ||||||  |||||||||||||||| | ||||||||||||||||||| |||| |||||| |  ||||||||| |    
T  7742757 gggcactcgcccgggctccgagcaaatttttttgcaatttcttgtgtaaatccttatgaatttcttatataaacccctataaattgggcaatttctttac 7742856  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7742857 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 7742911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 23908400 - 23908282
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttcttatgtacg 142  Q
    ||||| |||||||||||||||||||||||||||||||| |||| |||||| |  |||||||||   ||||||||||||||||||||||||||||||||||    
T  23908400 aattttttgtgtaaattcctatgaatttcttatataaatccctataaattggacaatttctttatgttttttattatttgcttgcaatttcttatgtacg 23908301  T
Q  143 ccctataaatgtgttgcaa 161  Q
    |||||||||||||||||||    
T  23908300 ccctataaatgtgttgcaa 23908282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 47022852 - 47022698
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttc 107  Q
    ||||||||| |||||||||||| ||||||||||  ||||||||||||||||  ||||||||||||||||||||  ||| |||||| |  |||||||||      
T  47022852 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaactcctataaattaggcaatttctttat 47022753  T
Q  108 cttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 162  Q
     ||||||||||||| |||| ||||||||||||||||||||||||| |||||||||    
T  47022752 attttttattatttacttgtaatttcttatgtacgccctataaatatgttgcaaa 47022698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 29149561 - 29149680
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttcttatgtacg 142  Q
    ||||| |||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||| | ||||||||||||||||||||||||||||||||||    
T  29149561 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacgttttttattatttgcttgcaatttcttatgtacg 29149660  T
Q  143 ccctataaatgtgttgcaaa 162  Q
    ||||||| ||||||||||||    
T  29149661 ccctatacatgtgttgcaaa 29149680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 38860001 - 38859849
Alignment:
Q  8 gggcactcgtccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt-t 106  Q
    ||||||||| |||||||||||  ||||||||||  |||||||| ||||||||||||||||||||||||||||| |||| |||||| |  ||||| |||      
T  38860001 gggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaatttttttag 38859902  T
Q  107 ccttttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttg 158  Q
      ||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  38859901 atttttttattatttgcttgcaatttcttatgtaaacccctataaatgtgttg 38859849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 10907636 - 10907781
Alignment:
Q  18 ccgggctccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-at 116  Q
    |||||||||||  ||||||||||  |||||||| ||||||||||| ||||||||||||||||| |||| |||||  |  |||||||||   |||||| ||    
T  10907636 ccgggctccggcccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctataaatcagacaatttctttagattttttgat 10907735  T
Q  117 tatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 161  Q
    ||||||||||||||||||||||||  | ||||||||||||||||||    
T  10907736 tatttgcttgcaatttcttatgtagacacctataaatgtgttgcaa 10907781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 42456699 - 42456625
Alignment:
Q  31 caaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttt 105  Q
    ||||||||||   ||||||| ||||||||||||||||||||||||||||| |||| |||||| |  |||||||||    
T  42456699 caaattttttgctatttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaatttcttt 42456625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 44107404 - 44107522
Alignment:
Q  46 ttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-attatttgcttgcaatttcttatgt-acgc 143  Q
    ||||| ||||||||||| ||| ||| ||||||||| |||| ||||||  ||||||||||    |||||| ||||||| ||||||||||||||||| |  |    
T  44107404 ttcttatgtaaattcctctgatttttttatataaacccctataaattaattaatttcttcagattttttgattatttacttgcaatttcttatgtaaaac 44107503  T
Q  144 cctataaatgtgttgcaaa 162  Q
    | |||||||||||||||||    
T  44107504 cttataaatgtgttgcaaa 44107522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 26835453 - 26835332
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-attatttgcttgcaatttcttatgtac 141  Q
    ||||| || ||||||||| |||||||||||||||||||  ||| ||||||    ||||| |||   |||||| |||||||||||||||||||| |||||     
T  26835453 aatttattatgtaaattcatatgaatttcttatataaactcctataaattgaacaatttttttagattttttgattatttgcttgcaatttctcatgtaa 26835354  T
Q  142 gccc-tataaatgtgttgcaaa 162  Q
     ||| |||||||||||||||||    
T  26835353 acccatataaatgtgttgcaaa 26835332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 13132017 - 13131914
Alignment:
Q  37 ttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttctta 136  Q
    |||| ||||||||| ||||||||||| | ||||| ||||||||| | || |||||| |  |||||||||  ||||||  |||| | ||||||||||||||    
T  13132017 ttttgtaatttcttatgtaaattcctctaaattttttatataaatcactataaattggacaatttctttagctttttacttatctccttgcaatttctta 13131918  T
Q  137 tgta 140  Q
    ||||    
T  13131917 tgta 13131914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 30745459 - 30745361
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-attatttgcttgcaatttcttatgta 140  Q
    ||||| || |||||||| || |||||||||| |||||| |||| |||||| |  |||||||||   |||||| ||||||| ||||||||||||||||||    
T  30745459 aattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttgcaatttcttatgta 30745361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 30766910 - 30766812
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttcctttttt-attatttgcttgcaatttcttatgta 140  Q
    ||||| || |||||||| || |||||||||| |||||| |||| |||||| |  |||||||||   |||||| ||||||| ||||||||||||||||||    
T  30766910 aattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttgcaatttcttatgta 30766812  T

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Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 5558402 - 5558334
Alignment:
Q  65 gaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgcttgcaatttc 133  Q
    |||||||||||||||| |||| |||||| |  |||||||||   ||||| |||||||||||||||||||    
T  5558402 gaatttcttatataaacccctataaattggacaatttctttagatttttgattatttgcttgcaatttc 5558334  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 8430521 - 8430551
Alignment:
Q  109 ttttttattatttgcttgcaatttcttatgt 139  Q
    |||||||||||||||||||||||||||||||    
T  8430521 ttttttattatttgcttgcaatttcttatgt 8430551  T

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Target: scaffold0079 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 54653 - 54542
Alignment:
Q  24 tccgggtcaaattttttataatttcttgtgtaaattcctatgaatttcttatataaaaccctctaaatttgttaatttcttttccttttttattatttgc 123  Q
    |||||| ||| ||||||  ||||| |||||||||||||||||||||| ||||||||| |||| |||||| |  ||||||||| | |||||||||||||||    
T  54653 tccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaatccctataaattggacaatttctttacattttttattatttgc 54554  T
Q  124 ttgcaatttctt 135  Q
    ||||||||||||    
T  54553 ttgcaatttctt 54542  T

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Target: scaffold0079; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 54549 - 54485
Alignment:
Q  97 aatttcttttccttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 161  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54549 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 54485  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 20844 - 20881
Alignment:
Q  43 aatttcttgtgtaaattcctatgaatttcttatataaa 80  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  20844 aatttcttatgtaaattcctctgaatttcttatataaa 20881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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