View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_36 (Length: 371)
Name: NF0243_low_36
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_36 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 132489 - 132170
Alignment:
| Q |
11 |
cagagaacacaagccatttgttcgaattctgctgtggtatagttgcggcatagcctctatttgacaatactaatttaaggtaggggcaatggcacattat |
110 |
Q |
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| T |
132489 |
cagagaacacaagccatttgttcgaattctgctgcggtatagttgcggcatagcctctatttgacaatactaatttaaggtaggggcaatggcacattat |
132390 |
T |
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| Q |
111 |
tgagacagatcacacagattatgatatgatatagctagtatgtataagcacttatataataagtgtttgattaaactgtttatcttaacatggtctaagt |
210 |
Q |
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| T |
132389 |
tgagacagatcacacagattatgatat-----agctagtatgtataagcacttatatgataagtttttgattaaattgtttaacttaacatggcctaagt |
132295 |
T |
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| Q |
211 |
gtgtgtttggttacgcatttcctgtcacttttttatgtaaattttgaccgggatttttataagctctaaattgaagctttcactttaccttgcttcaatt |
310 |
Q |
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| T |
132294 |
gtgtgtttggttacgcatttcctgtcacttttttatgtaaattttgactgggatttttataagctctaaattgtagctttaactttaccttgcttcaatt |
132195 |
T |
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| Q |
311 |
ttaaccgggatttttcactttacct |
335 |
Q |
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| T |
132194 |
ttgaccgggatttttcactttacct |
132170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 18232732 - 18233047
Alignment:
| Q |
11 |
cagagaacacaagccatttgttcgaattctgctgtggtatagttgcggcatagcctctatttgacaatactaatttaaggtaggggcaatggcacattat |
110 |
Q |
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| T |
18232732 |
cagagaacacaagccatttgttcgaattctgctgcggtatagttgcggcatagcctctatttgacaatactattttaaggtaggggcaatggcacattat |
18232831 |
T |
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| Q |
111 |
tgagacagatcacacagattatgatatgatatagctagtatgtataagcacttatataataagtgtttgattaaactgtttatcttaacatggtctaagt |
210 |
Q |
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| T |
18232832 |
tgagacagatcacacagat-----tatgatatagctagtatgtataagcacttatatgataagtgtttgattaaactgtttatcttaacatggcctacgt |
18232926 |
T |
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| Q |
211 |
gtgtgtttggttacgcatttcctgtcacttttttatgtaaattttgaccgggatttttataagctctaaattgaagctttcactttaccttgcttcaatt |
310 |
Q |
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| T |
18232927 |
gtgtgtttggttacgcatttcctgtcact------------ttttgaccgggatttttataagctctaaattgaagctttcactttaccttgcttcaatt |
18233014 |
T |
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| Q |
311 |
ttaaccgggatttttcactttacctcaatttag |
343 |
Q |
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|| |||||||||||||||||||||||||||||| |
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| T |
18233015 |
ttgaccgggatttttcactttacctcaatttag |
18233047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 3169373 - 3169413
Alignment:
| Q |
154 |
ataagcacttatataataagtgtttgattaaactgtttatc |
194 |
Q |
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| T |
3169373 |
ataagcacttatatgataagtgtttcattaaaccgtttatc |
3169413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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