View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0243_low_37 (Length: 370)

Name: NF0243_low_37
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0243_low_37
NF0243_low_37
[»] chr1 (4 HSPs)
chr1 (112-344)||(40399674-40399905)
chr1 (241-338)||(44188383-44188480)
chr1 (232-279)||(22536086-22536133)
chr1 (262-314)||(344309-344361)
[»] chr2 (1 HSPs)
chr2 (226-323)||(13280310-13280407)
[»] chr8 (7 HSPs)
chr8 (229-324)||(27183123-27183218)
chr8 (229-323)||(27231068-27231162)
chr8 (250-306)||(18140245-18140301)
chr8 (235-293)||(24465554-24465612)
chr8 (239-306)||(12724027-12724094)
chr8 (145-179)||(13473848-13473882)
chr8 (248-306)||(18095604-18095662)
[»] chr5 (2 HSPs)
chr5 (235-338)||(9763536-9763639)
chr5 (249-308)||(42261539-42261598)
[»] scaffold0129 (1 HSPs)
scaffold0129 (240-316)||(9622-9698)
[»] chr4 (1 HSPs)
chr4 (249-311)||(4876024-4876086)
[»] chr3 (1 HSPs)
chr3 (233-287)||(15861804-15861858)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 112 - 344
Target Start/End: Complemental strand, 40399905 - 40399674
Alignment:
Q  112 tgcagagacaccattcgcgtcaccttgcagaactccttccatggctccaacatttgagaaggtgagtaataacttatatacccccatgacatttccttgt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40399905 tgcagagacaccattcgcgtcaccttgcagaactccttccatggctccaacatttgagaaggtgagtaataacttatatacccc-atgacatttccttgt 40399807  T
Q  212 ctattctctctaaacttaagcgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcat 311  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40399806 ctattctctttaaacttaagcgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcat 40399707  T
Q  312 ttccaaatctcattcactctacgatgaaaatga 344  Q
    |||||||||||||||||||||||||||||||||    
T  40399706 ttccaaatctcattcactctacgatgaaaatga 40399674  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 338
Target Start/End: Complemental strand, 44188480 - 44188383
Alignment:
Q  241 tgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttccaaatctcattcactctacgatga 338  Q
    ||||||| |||||||||| |  | ||| | ||||||||||||||| | || |||| |||| ||||| ||||||||||||||||| ||||||| |||||    
T  44188480 tgtgttcgcaaatcatggtcattgttacttgaaaaccctaatttcttcaaaatgttccgcgacaatctcatttccaaatctcatccactctatgatga 44188383  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 22536133 - 22536086
Alignment:
Q  232 cgattttcttgtgttcacaaatcatggactcttttattcgaaaaccct 279  Q
    |||||| |||| ||||| ||||||||| ||||||||||||||||||||    
T  22536133 cgatttacttgcgttcaaaaatcatggtctcttttattcgaaaaccct 22536086  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 344309 - 344361
Alignment:
Q  262 cttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttc 314  Q
    |||||||| |||||||||||||| |||||||||||  | |||||| |||||||    
T  344309 cttttatttgaaaaccctaattttatgaacatgtattgtaacaatttcatttc 344361  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 323
Target Start/End: Original strand, 13280310 - 13280407
Alignment:
Q  226 cttaagcgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttccaaatctca 323  Q
    ||||| || ||| ||||||||| |||||||||| ||| |||||| |||||||||| |||||||||||||| |||||||||| |  |||||||||||||    
T  13280310 cttaaacgctttgcttgtgttcgcaaatcatggtctcatttatttgaaaaccctattttcatgaacatgttccgcaacaatcttgtttccaaatctca 13280407  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 324
Target Start/End: Original strand, 27183123 - 27183218
Alignment:
Q  229 aagcgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttccaaatctcat 324  Q
    ||||||||| ||||||||  |||||||||| ||||||||||  |||||||||||||||| ||| ||| |||||||||| |  ||||||||||||||    
T  27183123 aagcgatttacttgtgtttccaaatcatggtctcttttatttcaaaaccctaatttcatcaacttgttccgcaacaatcttgtttccaaatctcat 27183218  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 229 - 323
Target Start/End: Complemental strand, 27231162 - 27231068
Alignment:
Q  229 aagcgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttccaaatctca 323  Q
    ||||||||| ||||||||  |||||||||| ||||||||||  |||||||||||||||| ||| ||| |||||||||| |  |||||||||||||    
T  27231162 aagcgatttacttgtgtttccaaatcatggtctcttttatttcaaaaccctaatttcatcaacttgttccgcaacaatcttgtttccaaatctca 27231068  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 18140301 - 18140245
Alignment:
Q  250 aaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaat 306  Q
    ||||||||| | ||||||||| |||||||||||||||||||||||| ||||| ||||    
T  18140301 aaatcatggtcacttttattccaaaaccctaatttcatgaacatgttccgcaccaat 18140245  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 24465554 - 24465612
Alignment:
Q  235 ttttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacat 293  Q
    ||||||||||||| |||||||||||||| | |||| ||||||| ||||||||| |||||    
T  24465554 ttttcttgtgttcgcaaatcatggactcgtctattagaaaaccataatttcatcaacat 24465612  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 12724027 - 12724094
Alignment:
Q  239 cttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaat 306  Q
    |||||| ||| ||||||||| ||||||| ||| ||||| ||| |||||||||||||| ||||| ||||    
T  12724027 cttgtgctcaaaaatcatggtctcttttgttccaaaactctattttcatgaacatgttccgcaccaat 12724094  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 13473882 - 13473848
Alignment:
Q  145 tccttccatggctccaacatttgagaaggtgagta 179  Q
    |||||| ||||||||||||||||||||||||||||    
T  13473882 tccttctatggctccaacatttgagaaggtgagta 13473848  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 18095604 - 18095662
Alignment:
Q  248 acaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaat 306  Q
    ||||||||||| | ||| | ||| |||||||||||||||||||||||| ||||| ||||    
T  18095604 acaaatcatggtcacttcttttccaaaaccctaatttcatgaacatgttccgcaccaat 18095662  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 9763536 - 9763639
Alignment:
Q  235 ttttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttccaaatctcattcactctacg 334  Q
    ||||||||||||| |||||||||| ||||||| || |||||||||| ||| ||||||||||  |||| |||| |||| | |||||||||| ||||||| |    
T  9763536 ttttcttgtgttcgcaaatcatggtctcttttgtttgaaaaccctatttttatgaacatgtttcgcaccaatctcatattcaaatctcatccactctatg 9763635  T
Q  335 atga 338  Q
    ||||    
T  9763636 atga 9763639  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 42261539 - 42261598
Alignment:
Q  249 caaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatat 308  Q
    |||||||||| |||| |||||||||||||| |||||||| || |||||| ||||||||||    
T  42261539 caaatcatggtctctcttattcgaaaaccccaatttcattaagatgtactgcaacaatat 42261598  T

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Target: scaffold0129 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 9622 - 9698
Alignment:
Q  240 ttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttcca 316  Q
    |||||| || ||||||||| |||  ||||| |||||||||||||||||||||||||| || |||||| |||| ||||    
T  9622 ttgtgtacataaatcatggtctcgcttatttgaaaaccctaatttcatgaacatgtatcgtaacaatgtcatatcca 9698  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 4876024 - 4876086
Alignment:
Q  249 caaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcat 311  Q
    |||||||| | ||||||||||  |||||||||||||||||||||||| ||||| |||| ||||    
T  4876024 caaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcaccaatttcat 4876086  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 15861858 - 15861804
Alignment:
Q  233 gattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcat 287  Q
    |||||||||| | || ||||| |||| |||||||||| |||||||||||||||||    
T  15861858 gattttcttgcgctcgcaaattatggtctcttttatttgaaaaccctaatttcat 15861804  T

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