View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_38 (Length: 363)
Name: NF0243_low_38
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 201 - 333
Target Start/End: Original strand, 17018338 - 17018470
Alignment:
| Q |
201 |
ttgttcaatgtttcgtccaggttcacttatttgcatttctctctcaagtttttatcacggagaagtgctaaatctgttctatatttgaaggg-aaaacat |
299 |
Q |
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| T |
17018338 |
ttgttcaatgtttcgtccaggttcacttctttgcatttctctctcaagtttttatcacggagaagtgct-aatctgttctatatttaaagggaaaaacat |
17018436 |
T |
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| Q |
300 |
agttttgaagtgattttctcacttctaattatat |
333 |
Q |
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| T |
17018437 |
agttttggagtgattttctcacttctaattatat |
17018470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 77 - 275
Target Start/End: Original strand, 16995226 - 16995413
Alignment:
| Q |
77 |
acactaacacaaatttgattccatataacacttgtatgatctttgaatcttaaaatggagatcaaagcnnnnnnnntggaagaataaaatgcggctactc |
176 |
Q |
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| T |
16995226 |
acactcacacacatttgattccatttaacacttgtatgatctttgaatcttaaaatagagatcaaagcaaaaataatggaagaat---------ctcc-- |
16995314 |
T |
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| Q |
177 |
aagtttagatttctcatttcccttttgttcaatgtttcgtccaggttcacttatttgcatttctctctcaagtttttatcacggagaagtgctaaatct |
275 |
Q |
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| T |
16995315 |
atgtctagatttctcatttcccttttgttcaatgtttcgtccaggttcacttatttgcgtttctctctcaagtttttatcacagagaagtgctaaatct |
16995413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 17048964 - 17049064
Alignment:
| Q |
153 |
tggaagaataaaatgcggctactcaagtt-tagatttctcatttcccttttgttcaatgtttcgtccaggttcacttatttgcatttctctctcaagttt |
251 |
Q |
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| T |
17048964 |
tggaagaataaaatgcggctaatcgatatctaaatttcttatttcccttttgttccatatttcgaccaagttcacttctttgcatttctctct-aagttt |
17049062 |
T |
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| Q |
252 |
tt |
253 |
Q |
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|| |
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| T |
17049063 |
tt |
17049064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 17003121 - 17003158
Alignment:
| Q |
188 |
tctcatttcccttttgttcaatgtttcgtccaggttca |
225 |
Q |
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| T |
17003121 |
tctcatttccctttggttcaatgtttcgtccaggttca |
17003158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 17025522 - 17025559
Alignment:
| Q |
188 |
tctcatttcccttttgttcaatgtttcgtccaggttca |
225 |
Q |
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| T |
17025522 |
tctcatttccctttggttcaatgtttcgtccaggttca |
17025559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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