View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_39 (Length: 357)
Name: NF0243_low_39
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 43 - 344
Target Start/End: Complemental strand, 34873911 - 34873608
Alignment:
| Q |
43 |
acatcatcattcaacaatgtacacgaacaagcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccactg |
142 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
34873911 |
acatcatcattcaacaatgtacacgaacaagcttcaagaactatgtcaaaaaaactcataccctcttcccgaataccaaacaacccatgaaggaccactg |
34873812 |
T |
|
| Q |
143 |
cacaatcctcttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagaatttgttgcga |
242 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
34873811 |
cacaatcctcttttctcatcaaccgttaccgttaagtccatttccttcacttcaccagaacctgcaagcacccttaaggcatctcaagagtttgttgcga |
34873712 |
T |
|
| Q |
243 |
tggttgcttttcatcatttcctgcaaaatgaaaacaacagttaagtgttgcaatctatgatgtttctttcctcaactgatttataaatg--tttttcatt |
340 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
34873711 |
tggttgcttttcatcatttcctgcaaaatgaaaacaccagttaagtcttgcaatctatgatgtttctttcctcaactgatatataaatgcatttttcatt |
34873612 |
T |
|
| Q |
341 |
gtct |
344 |
Q |
| |
|
|||| |
|
|
| T |
34873611 |
gtct |
34873608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 43 - 344
Target Start/End: Original strand, 34871711 - 34872016
Alignment:
| Q |
43 |
acatcatcattcaacaatgtacacgaacaa--gcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccac |
140 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||| ||| || || |||| |||||||||||||||||||||||||||| |
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| T |
34871711 |
acatcatcattcaacaatgtacaagaacaaaagcttcaagaactatgtcaaaaaaactcttacccacttcccaaataccaaacaacccatgaaggaccac |
34871810 |
T |
|
| Q |
141 |
tgcacaatcctcttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagaatttgttgc |
240 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||| |
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| T |
34871811 |
tgcacaatcctcttttttcatcaaccgttaccgttaagtctatttccttcacttcaccaaaaccagcaagcacccttaaggcatctcaagagtttgctgc |
34871910 |
T |
|
| Q |
241 |
gatggttgcttttcatcatttcctgcaaaatgaaaacaacagttaagtgttgcaatctatgatgtttctttcctcaactgatttataaatg--tttttca |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34871911 |
gatggttgcttttcatcatttcctgcaaaatgaaaacaacagttaagtcttgcaatccatgatgtttctttcctcaactgatttataaatgcatttttca |
34872010 |
T |
|
| Q |
339 |
ttgtct |
344 |
Q |
| |
|
|||||| |
|
|
| T |
34872011 |
ttgtct |
34872016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 50 - 261
Target Start/End: Original strand, 9911036 - 9911247
Alignment:
| Q |
50 |
cattcaacaatgtacacgaacaagcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccactgcacaatc |
149 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||||| |||||| |
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|
| T |
9911036 |
cattcaacaatgtacaagaccaagcttcaagaactatgtcaaaaaaattcataccctcttcccgaataccaaacaacccgtgaaggaccaccacacaatt |
9911135 |
T |
|
| Q |
150 |
ctcttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagaatttgttgcgatggttgc |
249 |
Q |
| |
|
||| ||||||| |||| ||||| ||||| |||||||||||| |||| || |||| |||| ||||| ||||| |||||||| | || ||| |||||||| |
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| T |
9911136 |
ctcgtttctcaacaaccgttactgttaactccatttccttctcttctcctgaaccagcacgcaccattaagctgtctcaagattctgctgccatggttgc |
9911235 |
T |
|
| Q |
250 |
ttttcatcattt |
261 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9911236 |
ttttcatcattt |
9911247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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