View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_42 (Length: 346)
Name: NF0243_low_42
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 103 - 337
Target Start/End: Original strand, 2671250 - 2671484
Alignment:
| Q |
103 |
attggtaaatttgacatgcatatttgctttatttatttcctagagataccacatcataatgaaataaacaagtacttcgtaatggaacttaccccgtcta |
202 |
Q |
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| T |
2671250 |
attggtaaatttgacaagcatatatgctttatttatttcctagagataccacatcataatgaaataaacaagtacttcgtaatggaacttaccctgtctt |
2671349 |
T |
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| Q |
203 |
tattttagatcgaatttacaatataaaattcttctactatggagaattggaaaatattataatcaatctataatatcacatagatatattaaaaaatata |
302 |
Q |
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| T |
2671350 |
tattttagatcgaatttacaatataaaattcttctactatggagaattggaaaatattataatcaatctataatatcacatagatatattaaaaaatata |
2671449 |
T |
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| Q |
303 |
actgaccatttccattgatcaccattgagaattat |
337 |
Q |
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| T |
2671450 |
actgaccatttccattgatcaccattgagacttat |
2671484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 2671250 - 2671332
Alignment:
| Q |
22 |
attggtaaatttgacatgcatatttgctttatttatttcctagagataccacatcataatgaaataaacaagtacttcgtaat |
104 |
Q |
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| T |
2671250 |
attggtaaatttgacaagcatatatgctttatttatttcctagagataccacatcataatgaaataaacaagtacttcgtaat |
2671332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 37344270 - 37344387
Alignment:
| Q |
121 |
catatttgctttatttatttcctagagataccacatcataatgaaataaacaagtacttcgtaatggaacttaccccgtctatattttagatcgaattta |
220 |
Q |
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| T |
37344270 |
catatttgctttatttatttccaagaaatatcacatcatcgtgaaataaataagtgcttcgcaatggaactcacctcatctttattggagatccaattta |
37344369 |
T |
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| Q |
221 |
caatataaaattcttcta |
238 |
Q |
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||||||||||| |||||| |
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| T |
37344370 |
caatataaaatccttcta |
37344387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 37344270 - 37344330
Alignment:
| Q |
40 |
catatttgctttatttatttcctagagataccacatcataatgaaataaacaagtacttcg |
100 |
Q |
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| T |
37344270 |
catatttgctttatttatttccaagaaatatcacatcatcgtgaaataaataagtgcttcg |
37344330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 17514134 - 17514021
Alignment:
| Q |
108 |
taaatttgac-atgcata-tttgctttatttatttcctagagataccacatcataatgaaataaacaagtacttcgtaatggaacttaccccgtctatat |
205 |
Q |
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|||||||||| ||||||| ||||||| ||||||||| |||||| |||||||| |||||||||| |||||||| |||||||| |||| |||| ||| |
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| T |
17514134 |
taaatttgactatgcataatttgctt-atttatttcgaagagatgtcacatcatcatgaaataaataagtactttacaatggaacctaccttgtctttat |
17514036 |
T |
|
| Q |
206 |
tttagatcgaattta |
220 |
Q |
| |
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|| ||||| |||||| |
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|
| T |
17514035 |
ttgagatccaattta |
17514021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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