View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_43 (Length: 346)
Name: NF0243_low_43
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 339
Target Start/End: Complemental strand, 43624325 - 43623999
Alignment:
| Q |
21 |
acatcatcacgggcttaaacgcaatgagtttatgacctataaattgtaggcaaannnnnnncttaagcgttcaacgaaacgcacatatcatgcatggaga |
120 |
Q |
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| T |
43624325 |
acatcttcatgggcttaagcgcagtgagtttatgacctataaattgtaggcaaaattttttcttaggcgttcaacgaaacgcatatatcatgcattgaga |
43624226 |
T |
|
| Q |
121 |
aataatttcaatatagtctacaacatattaaatgtttatgaaacattatctgagttatacttatgaaatatatatat--------gggataaaatccacg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||| ||||||| |
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| T |
43624225 |
aataatttcaatatagtctacaacatattaaatgtttatgcaacatcatctgagttgtacttatgaaatatatatatatatatatgggataatatccacg |
43624126 |
T |
|
| Q |
213 |
atcatatatattttttacaatttcttttaatccaaaaaacatatataatccacattccacacgtagctcattttaaccggatgcctgttccaagtcttgt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43624125 |
atcatatatattttttacaatttcttttaatccaaaaaacatatataatccacattccacacgtagctcattttaactggatgcctgttccaagtcttgt |
43624026 |
T |
|
| Q |
313 |
gaggctttttgtgtttgctctctgctc |
339 |
Q |
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||||||||||||||||||||||||||| |
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| T |
43624025 |
gaggctttttgtgtttgctctctgctc |
43623999 |
T |
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