View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_5 (Length: 525)
Name: NF0243_low_5
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 12332724 - 12332888
Alignment:
| Q |
28 |
ggcaagatttgaaaaatagtcgacacaatattagcaaacattaaaaaatggcattaatgcatgaagaat----ataacatcattgctataatcggtgcat |
123 |
Q |
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| T |
12332724 |
ggcaagatttgaaaaatagtcgacacaatattagcaaacattaaaaaatggcattaatgtatgaagaattaatataacatcattgctataatcggtgcat |
12332823 |
T |
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| Q |
124 |
gtttgtgttcactatagtaaccagcaaatgttattgtcaaagtcttaattgttcttttgttaata |
188 |
Q |
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| T |
12332824 |
gtttgtgttcactatagtaaccagcaaatgttattgtcaaagtcttaattgttcttttgtcaata |
12332888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 273 - 434
Target Start/End: Original strand, 12332986 - 12333151
Alignment:
| Q |
273 |
gtggatcaaaattatcgaacagggaagaacagatgttatttataaaaaataaaagaggaacaagaaacaaacctgagaagaagaaaggaaccctagaacg |
372 |
Q |
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| T |
12332986 |
gtggatcaaaattattgaacagggaagaacagatgttatttataaaaaataaaagaggaacaagaaacaaacctgagaagaagaaaggaaccctagaacg |
12333085 |
T |
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| Q |
373 |
gggaataaggaaggaaggacggcgg--acggtggtgatgatggcg--acttcagggatggtgatga |
434 |
Q |
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| T |
12333086 |
gggaataaggaaggaaggacggcggctacggtggtgacgatggcgacacttcagggatggtgatga |
12333151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 12332932 - 12332965
Alignment:
| Q |
218 |
aacaacaaaaattattgaaacaacataggagagg |
251 |
Q |
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| T |
12332932 |
aacaacaaaaattattgaaataacataggagagg |
12332965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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