View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0243_low_52 (Length: 315)

Name: NF0243_low_52
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0243_low_52
NF0243_low_52
[»] chr7 (4 HSPs)
chr7 (18-225)||(49170164-49170371)
chr7 (18-223)||(12911593-12911798)
chr7 (104-223)||(22077858-22077978)
chr7 (19-131)||(10289200-10289312)
[»] chr4 (3 HSPs)
chr4 (18-225)||(55162292-55162499)
chr4 (18-225)||(40459061-40459264)
chr4 (142-215)||(28969093-28969167)
[»] chr1 (5 HSPs)
chr1 (18-224)||(8421704-8421910)
chr1 (18-225)||(338215-338421)
chr1 (142-197)||(9537278-9537335)
chr1 (19-131)||(43407776-43407888)
chr1 (20-131)||(26317315-26317426)
[»] chr5 (3 HSPs)
chr5 (18-225)||(40691012-40691220)
chr5 (18-225)||(30909898-30910107)
chr5 (61-131)||(38001023-38001093)
[»] chr2 (5 HSPs)
chr2 (18-225)||(36732053-36732263)
chr2 (18-225)||(40447588-40447794)
chr2 (18-223)||(18292605-18292813)
chr2 (20-223)||(40729290-40729492)
chr2 (19-131)||(41340680-41340792)
[»] scaffold0041 (2 HSPs)
scaffold0041 (142-211)||(33190-33259)
scaffold0041 (68-133)||(33284-33349)
[»] chr3 (2 HSPs)
chr3 (19-131)||(7337103-7337215)
chr3 (19-131)||(43278256-43278368)
[»] scaffold1838 (1 HSPs)
scaffold1838 (141-197)||(444-502)
[»] chr8 (2 HSPs)
chr8 (156-223)||(44436323-44436389)
chr8 (26-131)||(41958337-41958442)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 49170371 - 49170164
Alignment:
Q  18 gattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  49170371 gattattcttaattatgttttatatgaaagttgtgtatgataatatggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatgttg 49170272  T
Q  118 gaaaagaaatgttacannnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgca 217  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49170271 gaaaagaaatgttacatttttttgatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgca 49170172  T
Q  218 ttaatact 225  Q
    ||||||||    
T  49170171 ttaatact 49170164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 12911798 - 12911593
Alignment:
Q  18 gattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || ||||||||||||  ||||||| | ||||| | || |||    
T  12911798 gattattcttaattatgttttatatgaaagttgtgtatgataatgtgatgcgaattgacattttttatattaatatgctttatttattttttttatgttg 12911699  T
Q  118 gaaaagaaatgttacannnnnnngatgaattaaag--aagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatg 215  Q
    ||||||||||||||||       ||||||||||||  || ||||  |||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  12911698 gaaaagaaatgttaca--tttttgatgaattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatg 12911601  T
Q  216 cattaata 223  Q
    ||||||||    
T  12911600 cattaata 12911593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 223
Target Start/End: Original strand, 22077858 - 22077978
Alignment:
Q  104 tttttgtgatcttggaaaagaaatgttacannnnnnngatgaattaaagaa--gagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttg 201  Q
    |||||||| | ||||||||||| |||||||        |||||||||||||  ||||||||||||||||||||||||||||||||| ||||||| |||||    
T  22077858 tttttgtggtgttggaaaagaagtgttacattttttttatgaattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgatggactttt-ggttg 22077956  T
Q  202 tgtgcttgatgatgcattaata 223  Q
    |||| |||||||||| ||||||    
T  22077957 tgtgtttgatgatgcgttaata 22077978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 10289312 - 10289200
Alignment:
Q  19 attattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttgg 118  Q
    |||||| |||||||||||||||||||||||||||||||   ||||| |||||| || | | |||||||||| |  |||| ||||||| ||||||| | ||    
T  10289312 attatttttaattatgttttatatgaaagttgtgtatgtggatgtgatgtgaactggtttgttttatattattatgcttgatatgttcttgtgatgtagg 10289213  T
Q  119 aaaagaaatgtta 131  Q
     ||||| ||||||    
T  10289212 gaaagagatgtta 10289200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 8e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 55162292 - 55162499
Alignment:
Q  18 gattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||    
T  55162292 gattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattagtatattttatattaatgcgctttatatgtttttgtgatgttg 55162391  T
Q  118 gaaaagaaatgttacannnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgca 217  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  55162392 gaaaagaaatgttacatttttttgatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgca 55162491  T
Q  218 ttaatact 225  Q
    ||||||||    
T  55162492 ttaatact 55162499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 40459061 - 40459264
Alignment:
Q  18 gattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||| ||||||||| |||    
T  40459061 gattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatg-ttttgtgatgttg 40459159  T
Q  118 gaaaagaaatgttaca-nnnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgc 216  Q
    ||||||||||||||||        | |||||||||||||||||||||    || ||||||||||||||||||||||||||| ||||||||||||||||||    
T  40459160 gaaaagaaatgttacattttctttggtgaattaaagaagagaaagat----atatgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgc 40459255  T
Q  217 attaatact 225  Q
    |||||||||    
T  40459256 attaatact 40459264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 28969167 - 28969093
Alignment:
Q  142 atgaattaaagaa--gagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatg 215  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||    
T  28969167 atgaattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgattgactttt-ggttgtgtgtttcatgatg 28969093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 166; Significance: 8e-89; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 8421704 - 8421910
Alignment:
Q  18 gattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  8421704 gattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgttcttgtgatgttg 8421803  T
Q  118 gaaaagaaatgttacannnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgca 217  Q
    ||||||||||||||||       ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  8421804 gaaaagaaatgttacatttttttgattaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgactgacttttggtttgtgtgcttgatgatgca 8421903  T
Q  218 ttaatac 224  Q
    |||||||    
T  8421904 ttaatac 8421910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 338215 - 338421
Alignment:
Q  18 gattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttg 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |  |||||||||| |||||||   |||    
T  338215 gattattcttaattatgttttatatgaaagtagtgtatgataatgtggtgtggattgatatattttatattattatgctttatatg-ttttgtggcgttg 338313  T
Q  118 gaaaagaaatgttacannnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgca 217  Q
    ||||||||||||||||       |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  338314 gaaaagaaatgttacattttcttgatgaattaaagaagaaaaagatgagaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgca 338413  T
Q  218 ttaatact 225  Q
    ||||||||    
T  338414 ttaatact 338421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 9537335 - 9537278
Alignment:
Q  142 atgaattaaagaa--gagaaagatgaaaatgtgagtttgtgaaatgattgacttttgg 197  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  9537335 atgaattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgatggacttttgg 9537278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 43407888 - 43407776
Alignment:
Q  19 attattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttgg 118  Q
    |||||| |||||||||||||||||||||||||||||||   ||||| |||||| || | | |||||||||| |  |||| ||||||| ||||||| | ||    
T  43407888 attatttttaattatgttttatatgaaagttgtgtatgtggatgtgatgtgaactggtttgttttatattattatgcttgatatgttcttgtgatgtagg 43407789  T
Q  119 aaaagaaatgtta 131  Q
     ||||| ||||||    
T  43407788 gaaagagatgtta 43407776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 26317315 - 26317426
Alignment:
Q  20 ttattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttgga 119  Q
    |||||||||||| ||| |||||||| | |||||||||| |||||| |||  | ||||||||||||| | | |  | ||||||| | |||||||| ||||     
T  26317315 ttattcttaattttgtattatatgatatttgtgtatgaaaatgtgatgtagaatgatatattttatgtgattatgttttatatatctttgtgatgttggg 26317414  T
Q  120 aaagaaatgtta 131  Q
    ||||||||||||    
T  26317415 aaagaaatgtta 26317426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 40691012 - 40691220
Alignment:
Q  18 gattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttg 117  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  40691012 gattattcttaattatgttttagatgaaagttgtgtatgataatgtggtgtgaattgatatattttatatcaatgcgctttatatgtttttgtgatgttg 40691111  T
Q  118 gaaaagaaatgttaca-nnnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgc 216  Q
    ||||||||||||||||        |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40691112 gaaaagaaatgttacattttttttgatgaattaaagaagaaaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgc 40691211  T
Q  217 attaatact 225  Q
    |||||||||    
T  40691212 attaatact 40691220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 30909898 - 30910107
Alignment:
Q  18 gattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttg 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| || || |||||||||||||||||| |  ||||||||||||||| | || |||    
T  30909898 gattattcttaattatgttttatatgaaagttgtgtacgataatgtgatgcgagttgatatattttatattattatgctttatatgttttttttatgttg 30909997  T
Q  118 gaaaagaaatgttacannnnnnngatgaattaaag----aagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatga 213  Q
    |||||| |||||||||       || |||||||||    || |||| |||||||||||| ||||||||||||||||| |||||| |||||| |||||| |    
T  30909998 gaaaagtaatgttaca--tttttgacgaattaaagaaaaaaaagaacgatgaaaatgtgtgtttgtgaaatgattgaattttggtttgtgtacttgatca 30910095  T
Q  214 tgcattaatact 225  Q
    ||||||||||||    
T  30910096 tgcattaatact 30910107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 38001023 - 38001093
Alignment:
Q  61 tgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaaagaaatgtta 131  Q
    |||| |||||| |||||||||||||  || |  |||||||||||||||||||| |||||||||| ||||||    
T  38001023 tgtgatgtgaaatgatatattttatgctattatgctttatatgtttttgtgatgttggaaaagagatgtta 38001093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 36732263 - 36732053
Alignment:
Q  18 gattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttg 117  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||  ||    
T  36732263 gattattcttaattatgtttgatataaaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgctg 36732164  T
Q  118 gaaaagaaatgttaca---nnnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgat 214  Q
    |||||||||||| |||          |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  36732163 gaaaagaaatgtcacatttgttttttgatgaattaaggaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcgtgatgat 36732064  T
Q  215 gcattaatact 225  Q
    |||||||||||    
T  36732063 gcattaatact 36732053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 40447588 - 40447794
Alignment:
Q  18 gattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttg 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |  |||||||||| |||||||   |||    
T  40447588 gattattcttaattatgttttatatgaaagtagtgtatgataatgtggtgtggattgatatattttatattattatgctttatatg-ttttgtggcgttg 40447686  T
Q  118 gaaaagaaatgttacannnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgca 217  Q
    |||||| |||||||||       ||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  40447687 gaaaagtaatgttacattttcttgatgatttaaagaagaaaaagatgataatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgca 40447786  T
Q  218 ttaatact 225  Q
    ||||||||    
T  40447787 ttaatact 40447794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 18292813 - 18292605
Alignment:
Q  18 gattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttg 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |  ||||||||| |||||||||| |||    
T  18292813 gattattcttaattatgttttatatgaaagttgtgtgtgataatgtagtgtgaattgatatattttatattattatgctttatatatttttgtgatgttg 18292714  T
Q  118 gaaaagaaatgttaca--nnnnnnngatgaattaaag--aagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatga 213  Q
    ||||||||||||||||          |||||| ||||  |||||||||||||||||||||||||||||||||||||||  || ||||||||| |||||||    
T  18292713 gaaaagaaatgttacattttttttttatgaataaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgattgacggtt-ggttgtgtgtttgatga 18292615  T
Q  214 tgcattaata 223  Q
    ||||||||||    
T  18292614 tgcattaata 18292605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 40729492 - 40729290
Alignment:
Q  20 ttattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttgga 119  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||| |||||    
T  40729492 ttattcttaattatgttttatatggaaattgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttgga 40729393  T
Q  120 aaagaaatgttacannnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgcatt 219  Q
    ||||||||| || |        |||||||||| || ||||||||||| |||||| ||||||||||| | ||||||| ||||||||| |||||||||| ||    
T  40729392 aaagaaatgctatattttttttatgaattaaataatagaaagatgaacatgtgaatttgtgaaatggtggactttt-ggttgtgtgtttgatgatgcgtt 40729294  T
Q  220 aata 223  Q
    ||||    
T  40729293 aata 40729290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 41340792 - 41340680
Alignment:
Q  19 attattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttgg 118  Q
    |||||||||| |||||||||||||||||||||||||||   ||||| |||||| || ||| |||||||||| |  |||| ||||||| ||||||| | ||    
T  41340792 attattcttacttatgttttatatgaaagttgtgtatgtggatgtgatgtgaactggtatgttttatattattatgcttgatatgttcttgtgatgtagg 41340693  T
Q  119 aaaagaaatgtta 131  Q
     ||||| ||||||    
T  41340692 gaaagagatgtta 41340680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 33259 - 33190
Alignment:
Q  142 atgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||    
T  33259 atgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggttcgtgtacttgat 33190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 33349 - 33284
Alignment:
Q  68 tgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaaagaaatgttaca 133  Q
    |||||||||||||||||| ||| |  | |||||||||||||||||| | |||||||||||||||||    
T  33349 tgaattgatatattttatcttattatgttttatatgtttttgtgatgtaggaaaagaaatgttaca 33284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 7337215 - 7337103
Alignment:
Q  19 attattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttgg 118  Q
    |||||| |||||||||||||||||||||||||||||||   ||||| |||||| || | | |||||||||| |  |||| ||||||| ||||||| | ||    
T  7337215 attatttttaattatgttttatatgaaagttgtgtatgtggatgtgatgtgaactggtttgttttatattattatgcttgatatgttcttgtgatgtagg 7337116  T
Q  119 aaaagaaatgtta 131  Q
     ||||| ||||||    
T  7337115 gaaagagatgtta 7337103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 43278368 - 43278256
Alignment:
Q  19 attattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttgg 118  Q
    |||||||||||||||||||||| |||||||||||||||   ||||| |||||| || | | |||||||||| |  |||| ||||||| ||||||| | ||    
T  43278368 attattcttaattatgttttatgtgaaagttgtgtatgtggatgtgatgtgaactggtttgttttatattattatgcttgatatgttcttgtgatgtagg 43278269  T
Q  119 aaaagaaatgtta 131  Q
     ||||| ||||||    
T  43278268 gaaagagatgtta 43278256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 444 - 502
Alignment:
Q  141 gatgaattaaagaa--gagaaagatgaaaatgtgagtttgtgaaatgattgacttttgg 197  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||||||  ||||||||    
T  444 gatgaattaaagaaaagagaaagttgaaaatgtgagtttgtgaaatgatgaacttttgg 502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 44436323 - 44436389
Alignment:
Q  156 agaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatgcattaata 223  Q
    ||||||||||||| ||||| |||||||||||||||||||| |  |||||| |||||||||| ||||||    
T  44436323 agaaagatgaaaacgtgagattgtgaaatgattgactttt-gcctgtgtgtttgatgatgcgttaata 44436389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 41958442 - 41958337
Alignment:
Q  26 ttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaaagaa 125  Q
    ||||||||||| || |||| | || || |||| | |||| |||||| | |||||||||||  || |  |||||||||||||||||||| ||||||||||     
T  41958442 ttaattatgttctagatgatatttatgaatgagagtgtgatgtgaaataatatattttatgctattatgctttatatgtttttgtgatgttggaaaagag 41958343  T
Q  126 atgtta 131  Q
    ||||||    
T  41958342 atgtta 41958337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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